Experiment set11IT053 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Irigenin 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_1613 -4.5 -3.1 septum site-determining protein MinC compare
Psyr_1544 -4.1 -4.0 SirA-like protein compare
Psyr_0951 -4.0 -4.7 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4340 -3.6 -9.2 phosphomethylpyrimidine kinase, putative compare
Psyr_4683 -3.5 -4.1 dethiobiotin synthase compare
Psyr_4686 -3.4 -5.6 8-amino-7-oxononanoate synthase compare
Psyr_3008 -3.4 -9.0 Undecaprenyl-diphosphatase compare
Psyr_4740 -3.3 -6.2 thiazole-phosphate synthase compare
Psyr_4203 -3.1 -2.9 SsrA-binding protein compare
Psyr_3808 -2.8 -2.2 hypothetical protein compare
Psyr_4341 -2.6 -7.5 thiamine-phosphate diphosphorylase compare
Psyr_4687 -2.6 -7.5 biotin synthase compare
Psyr_4580 -2.5 -3.3 anthranilate phosphoribosyltransferase compare
Psyr_1663 -2.4 -3.8 phosphoribosylanthranilate isomerase compare
Psyr_0849 -2.4 -10.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0475 -2.3 -2.7 Protein of unknown function YGGT compare
Psyr_1373 -2.3 -3.4 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0454 -2.2 -5.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4684 -2.2 -3.6 biotin synthesis protein BioC compare
Psyr_4091 -2.2 -5.9 8-oxo-dGTPase compare
Psyr_0918 -2.1 -12.0 ABC transporter compare
Psyr_0255 -2.0 -2.7 glutamate-cysteine ligase compare
Psyr_1227 -2.0 -3.9 Queuosine biosynthesis protein compare
Psyr_0917 -1.9 -10.5 ABC-2 compare
Psyr_4991 -1.9 -3.2 hypothetical protein compare
Psyr_4627 -1.9 -3.0 dimethyladenosine transferase compare
Psyr_0574 -1.8 -5.3 protease FtsH subunit HflK compare
Psyr_0259 -1.8 -4.2 Osmolarity sensor protein envZ compare
Psyr_4884 -1.8 -5.0 Rhodanese-like protein compare
Psyr_0571 -1.8 -3.8 tRNA isopentenyltransferase compare
Psyr_1556 -1.8 -3.0 hypothetical protein compare
Psyr_0826 -1.7 -7.1 glucose-6-phosphate isomerase compare
Psyr_2346 -1.6 -4.3 conserved hypothetical protein compare
Psyr_5135 -1.6 -2.4 Protein of unknown function DUF37 compare
Psyr_0014 -1.5 -3.4 lipid A biosynthesis acyltransferase compare
Psyr_1907 -1.5 -3.4 GTP cyclohydrolase I compare
Psyr_1748 -1.5 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_5133 -1.5 -3.8 tRNA modification GTPase trmE compare
Psyr_1953 -1.4 -1.4 conserved hypothetical protein compare
Psyr_4050 -1.4 -2.8 Protein of unknown function DUF479 compare
Psyr_4362 -1.4 -3.5 Rare lipoprotein A compare
Psyr_2848 -1.4 -4.4 hypothetical protein compare
Psyr_1667 -1.4 -5.0 Colicin V production protein compare
Psyr_1751 -1.3 -4.0 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0575 -1.3 -3.1 protease FtsH subunit HflC compare
Psyr_3202 -1.3 -1.9 NADH dehydrogenase subunit G compare
Psyr_1779 -1.3 -3.2 hypothetical protein compare
Psyr_0487 -1.3 -2.3 glutathione synthase compare
Psyr_4581 -1.3 -2.9 anthranilate synthase, component II compare
Psyr_3090 -1.2 -2.5 hypothetical protein compare
Psyr_1975 -1.2 -2.3 Integrase, catalytic region compare
Psyr_3287 -1.2 -2.0 DNA topoisomerase I compare
Psyr_2471 -1.2 -2.3 hydroxymethylglutaryl-CoA lyase compare
Psyr_3581 -1.2 -5.1 ribosomal large subunit pseudouridine synthase B compare
Psyr_0034 -1.2 -0.8 tryptophan synthase, beta chain compare
Psyr_3807 -1.2 -5.1 hypothetical protein compare
Psyr_3644 -1.2 -3.5 prephenate dehydrogenase compare
Psyr_1935 -1.1 -3.1 Protein of unknown function DUF796 compare
Psyr_1094 -1.1 -3.3 cold-shock DNA-binding protein family compare
Psyr_4622 -1.1 -4.1 Nucleotidyl transferase compare
Psyr_0215 -1.1 -6.8 Exodeoxyribonuclease III xth compare
Psyr_3854 -1.1 -1.6 OmpA/MotB compare
Psyr_0549 -1.1 -1.5 Metallophosphoesterase compare
Psyr_1419 -1.1 -2.1 preQ(0) biosynthesis protein QueC compare
Psyr_1408 -1.1 -2.5 Holliday junction endonuclease RuvC compare
Psyr_2462 -1.1 -3.7 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0565 -1.1 -5.0 Protein of unknown function UPF0126 compare
Psyr_1268 -1.1 -5.1 extracellular solute-binding protein, family 3:SLT compare
Psyr_0493 -1.1 -2.2 CheW-like protein compare
Psyr_2617 -1.0 -2.4 Secretion protein HlyD compare
Psyr_1350 -1.0 -2.6 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_3620 -1.0 -1.9 hypothetical protein compare
Psyr_0268 -1.0 -2.3 DSBA oxidoreductase compare
Psyr_1588 -1.0 -2.9 Putative exonuclease, RdgC compare
Psyr_0282 -1.0 -3.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2067 -1.0 -1.2 ABC transporter compare
Psyr_4460 -1.0 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_3450 -1.0 -3.2 Hpt compare
Psyr_3728 -1.0 -4.3 hypothetical protein compare
Psyr_4822 -1.0 -1.9 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_4089 -0.9 -3.8 PAS compare
Psyr_2769 -0.9 -2.9 conserved hypothetical protein compare
Psyr_0529 -0.9 -3.1 Glycosyl transferase, group 1 compare
Psyr_1832 -0.9 -1.6 Exonuclease compare
Psyr_3554 -0.9 -1.8 Carbon storage regulator compare
Psyr_0281 -0.9 -1.7 ABC transporter compare
Psyr_0394 -0.9 -3.7 Heat shock protein HslU compare
Psyr_5029 -0.9 -1.7 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_3193 -0.9 -1.7 Transcription factor jumonji, jmjC compare
Psyr_0927 -0.9 -2.1 hypothetical protein compare
Psyr_4115 -0.9 -1.6 phosphoheptose isomerase compare
Psyr_4519 -0.9 -4.4 General substrate transporter:Major facilitator superfamily compare
Psyr_1555 -0.9 -2.3 Cobyrinic acid a,c-diamide synthase compare
Psyr_2854 -0.8 -3.1 conserved hypothetical protein compare
Psyr_2184 -0.8 -2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_1944 -0.8 -2.3 Thioesterase compare
Psyr_2642 -0.8 -2.6 hypothetical protein compare
Psyr_1802 -0.8 -1.6 transcriptional regulator, AsnC family compare
Psyr_0148 -0.8 -2.2 hypothetical protein compare
Psyr_4118 -0.8 -3.8 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_2664 -0.8 -4.2 hypothetical protein compare
Psyr_1930 -0.8 -1.8 hypothetical protein compare
Psyr_1404 -0.8 -4.9 Ferritin and Dps compare
Psyr_3840 -0.8 -2.4 conserved hypothetical protein compare
Psyr_0386 -0.8 -3.6 phosphoribosyl-AMP cyclohydrolase compare
Psyr_5129 -0.8 -2.5 chromosome segregation DNA-binding protein compare
Psyr_2348 -0.8 -1.9 hypothetical protein compare
Psyr_4609 -0.8 -5.8 anthranilate synthase, component I compare
Psyr_3020 -0.8 -1.3 precorrin-4 C11-methyltransferase compare
Psyr_3174 -0.8 -1.9 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_4194 -0.8 -2.7 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_2977 -0.8 -2.2 cointegrate resolution protein T compare
Psyr_3282 -0.8 -3.2 transcriptional regulator, TetR family compare
Psyr_1934 -0.8 -3.8 conserved hypothetical protein compare
Psyr_4051 -0.8 -1.3 transcriptional regulator, ArsR family compare
Psyr_2294 -0.8 -2.5 conserved hypothetical protein compare
Psyr_1372 -0.8 -2.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_0724 -0.8 -1.4 conserved hypothetical protein compare
Psyr_0580 -0.8 -2.4 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_2227 -0.7 -1.7 conserved hypothetical protein compare
Psyr_4386 -0.7 -2.4 conserved hypothetical protein compare
Psyr_2321 -0.7 -4.4 YD repeat protein compare
Psyr_3640 -0.7 -1.6 conserved hypothetical protein compare
Psyr_2114 -0.7 -2.8 two component transcriptional regulator, LuxR family compare
Psyr_2285 -0.7 -1.3 Twin-arginine translocation pathway signal compare
Psyr_3954 -0.7 -3.2 GTP-binding protein LepA compare
Psyr_3439 -0.7 -2.8 GTP-binding signal recognition particle SRP54, G-domain protein compare
Psyr_2255 -0.7 -1.9 ABC transporter compare
Psyr_2990 -0.7 -2.3 conserved hypothetical protein compare
Psyr_4087 -0.7 -0.8 Protein of unknown function DUF520 compare
Psyr_2980 -0.7 -2.0 UDP-glucose pyrophosphorylase compare
Psyr_4138 -0.7 -2.1 Toluene tolerance compare
Psyr_0579 -0.7 -5.3 RNAse R compare
Psyr_0941 -0.7 -3.8 Conserved hypothetical protein 92 compare
Psyr_2601 -0.7 -4.3 regulatory protein, LuxR compare
Psyr_2641 -0.7 -1.4 hypothetical protein compare
Psyr_4408 -0.7 -3.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3585 -0.7 -2.3 Sua5/YciO/YrdC/YwlC compare
Psyr_0444 -0.7 -1.1 Malonate decarboxylase delta subunit compare
Psyr_4463 -0.7 -2.3 Protein of unknown function DUF193 compare
Psyr_1460 -0.7 -2.7 hypothetical protein compare
Psyr_0406 -0.7 -2.9 Pilus assembly protein, PilQ compare
Psyr_2356 -0.7 -2.9 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_2071 -0.7 -0.8 outer membrane lipoprotein OprI compare
Psyr_4464 -0.7 -1.1 lipoprotein, putative compare
Psyr_4978 -0.7 -2.2 hypothetical protein compare
Psyr_0528 -0.7 -1.6 Carbamoyltransferase compare
Psyr_1749 -0.7 -3.7 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_5072 -0.7 -1.0 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3213 -0.7 -1.6 Propeptide, PepSY amd peptidase M4 compare
Psyr_0350 -0.7 -1.7 ABC transporter compare
Psyr_0919 -0.7 -4.5 Chromosome segregation ATPase-like protein compare
Psyr_0812 -0.7 -2.0 stress protein compare
Psyr_0524 -0.7 -2.0 Lipopolysaccharide kinase compare
Psyr_1212 -0.7 -1.6 type III secretion protein HrpO compare
Psyr_2134 -0.7 -1.7 protein of unknown function DUF903 compare
Psyr_3136 -0.7 -3.1 hypothetical protein compare
Psyr_1410 -0.7 -1.9 Holliday junction DNA helicase RuvB compare
Psyr_2095 -0.7 -2.1 Conserved TM helix compare
Psyr_2388 -0.7 -2.0 Twin-arginine translocation pathway signal compare
Psyr_2428 -0.7 -1.4 GCN5-related N-acetyltransferase compare
Psyr_5102 -0.7 -2.1 ABC transporter compare
Psyr_0395 -0.6 -1.6 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_2060 -0.6 -2.2 Sec-independent protein translocase TatD compare
Psyr_3458 -0.6 -1.3 Flagellar hook-basal body complex protein FliE compare
Psyr_3806 -0.6 -2.3 hypothetical protein compare
Psyr_0174 -0.6 -3.8 Sodium:dicarboxylate symporter compare
Psyr_1554 -0.6 -2.4 hypothetical protein compare
Psyr_3374 -0.6 -2.1 Heavy metal response regulator compare
Psyr_3425 -0.6 -1.1 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_2855 -0.6 -2.0 methionine synthase (B12-independent) compare
Psyr_1193 -0.6 -1.4 type III helper protein HrpZ1 compare
Psyr_4351 -0.6 -2.3 conserved domain protein compare
Psyr_2126 -0.6 -2.2 4-carboxymuconolactone decarboxylase compare
Psyr_1747 -0.6 -1.8 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_5130 -0.6 -3.4 chromosome segregation ATPase compare
Psyr_3293 -0.6 -1.3 UspA compare
Psyr_3791 -0.6 -1.6 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_1989 -0.6 -2.5 galactonate dehydratase compare
Psyr_3081 -0.6 -1.7 Secretion protein HlyD compare
Psyr_0928 -0.6 -4.1 hypothetical protein compare
Psyr_0490 -0.6 -2.8 CheW-like protein compare
Psyr_4512 -0.6 -3.0 putative phage-related protein compare
Psyr_0920 -0.6 -5.0 Glycosyl transferase, group 1 compare
Psyr_3310 -0.6 -2.8 transferase hexapeptide repeat protein compare
Psyr_1806 -0.6 -1.5 Ureidoglycolate hydrolase compare
Psyr_4933 -0.6 -3.1 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_3522 -0.6 -3.2 L-serine ammonia-lyase compare
Psyr_3208 -0.6 -1.2 NADH dehydrogenase subunit M compare
Psyr_0673 -0.6 -2.3 nucleoside ABC transporter ATP-binding protein compare
Psyr_2392 -0.6 -2.2 conserved hypothetical protein compare
Psyr_3446 -0.6 -0.8 Surface presentation of antigens (SPOA) protein compare
Psyr_3164 -0.6 -3.3 Protein of unknown function UPF0005 compare
Psyr_3088 -0.6 -2.0 Glycosyl transferase, group 1 compare
Psyr_2241 -0.6 -3.1 methyl-accepting chemotaxis sensory transducer compare
Psyr_4465 -0.6 -1.1 conserved domain protein compare
Psyr_3258 -0.6 -1.7 conserved hypothetical protein compare
Psyr_0025 -0.6 -1.7 shikimate dehydrogenase compare
Psyr_0092 -0.6 -3.3 Lysine exporter protein (LYSE/YGGA) compare
Psyr_0835 -0.6 -2.4 transcriptional regulator, TraR/DksA family compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Irigenin across organisms