Experiment set11IT053 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Irigenin 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_3146 +1.2 3.0 general secretion pathway protein J, putative compare
Psyr_2538 +1.2 3.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2245 +1.1 2.7 conserved domain protein compare
Psyr_1222 +1.0 2.3 CDS compare
Psyr_2543 +1.0 1.6 conserved hypothetical protein compare
Psyr_2342 +0.9 3.2 CBS:Transporter-associated region:Integral membrane protein TerC compare
Psyr_0441 +0.9 2.4 conserved hypothetical protein compare
Psyr_1447 +0.9 1.7 conserved hypothetical protein compare
Psyr_2733 +0.8 2.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_1196 +0.8 2.0 type III secretion protein HrpD compare
Psyr_4466 +0.8 2.3 Thioredoxin compare
Psyr_3055 +0.8 1.5 Aminoglycoside phosphotransferase compare
Psyr_4750 +0.8 2.7 cell division ATP-binding protein FtsE compare
Psyr_3755 +0.8 1.8 conserved hypothetical protein compare
Psyr_2927 +0.7 1.9 transcriptional regulator, TetR family compare
Psyr_2340 +0.7 2.5 Peptidylprolyl isomerase, FKBP-type compare
Psyr_1424 +0.7 1.9 Peptidase S24, S26A and S26B compare
Psyr_2150 +0.7 1.4 protein of unknown function DUF903 compare
Psyr_1881 +0.7 2.9 conserved hypothetical protein compare
Psyr_1381 +0.7 3.6 conserved hypothetical protein compare
Psyr_2266 +0.7 1.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0176 +0.7 2.3 conserved hypothetical protein compare
Psyr_3692 +0.7 1.1 conserved hypothetical protein compare
Psyr_2829 +0.7 1.7 conserved hypothetical protein compare
Psyr_0437 +0.7 2.1 acyl carrier protein, putative compare
Psyr_2223 +0.7 0.8 sarcosine oxidase, delta subunit compare
Psyr_2557 +0.6 1.5 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_4487 +0.6 1.5 Carbohydrate kinase, PfkB compare
Psyr_1988 +0.6 2.0 2-keto-3-deoxy-phosphogalactonate aldolase compare
Psyr_4169 +0.6 1.8 4-carboxymuconolactone decarboxylase compare
Psyr_3000 +0.6 1.7 methyltransferase, putative compare
Psyr_0385 +0.6 1.9 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1946 +0.6 1.2 diaminobutyrate aminotransferase apoenzyme compare
Psyr_2851 +0.6 1.4 conserved hypothetical protein compare
Psyr_3812 +0.6 1.4 CDS compare
Psyr_2501 +0.6 1.8 Hemerythrin compare
Psyr_3473 +0.6 1.8 Flagellar P-ring protein compare
Psyr_3590 +0.6 2.4 conserved hypothetical protein compare
Psyr_2052 +0.6 2.9 lipoprotein, putative compare
Psyr_3529 +0.6 2.2 Asp/Glu racemase compare
Psyr_0635 +0.6 1.3 MaoC-like dehydratase compare
Psyr_2938 +0.6 2.1 transcriptional regulator, LysR family compare
Psyr_3929 +0.6 2.9 conserved hypothetical protein compare
Psyr_0356 +0.6 0.6 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_3195 +0.6 2.7 NolW-like protein compare
Psyr_1585 +0.6 3.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_4831 +0.6 2.4 ABC transporter compare
Psyr_3676 +0.6 1.9 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3184 +0.6 1.4 ATP-dependent Clp protease adaptor protein ClpS compare
Psyr_0447 +0.5 1.8 malonate decarboxylase subunit, putative compare
Psyr_2767 +0.5 0.9 Glycoside hydrolase, family 19 compare
Psyr_3004 +0.5 1.8 transcriptional regulator, LysR family compare
Psyr_2741 +0.5 1.8 Beta-lactamase compare
Psyr_2124 +0.5 2.8 Benzoate transport compare
Psyr_2521 +0.5 2.4 conserved hypothetical protein compare
Psyr_1868 +0.5 2.2 hypothetical protein compare
Psyr_2578 +0.5 1.4 regulatory protein, LuxR compare
Psyr_2765 +0.5 1.8 conserved domain protein compare
Psyr_4336 +0.5 1.2 ribosomal large subunit pseudouridine synthase E compare
Psyr_4730 +0.5 1.0 FecR protein compare
Psyr_1022 +0.5 1.4 conserved hypothetical protein compare
Psyr_1600 +0.5 2.3 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_3152 +0.5 0.7 hypothetical protein compare
Psyr_3795 +0.5 1.8 hypothetical protein compare
Psyr_5036 +0.5 1.1 Response regulator receiver compare
Psyr_3399 +0.5 2.2 Endoribonuclease L-PSP compare
Psyr_2401 +0.5 1.9 extracellular solute-binding protein, family 1 compare
Psyr_3627 +0.5 1.3 OsmC-like protein compare
Psyr_3567 +0.5 1.1 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_4582 +0.5 0.8 hypothetical protein compare
Psyr_2866 +0.5 2.7 Secretion protein HlyD compare
Psyr_2781 +0.5 1.3 hypothetical protein compare
Psyr_2228 +0.5 1.7 conserved hypothetical protein compare
Psyr_2088 +0.5 1.3 2-methylaconitate cis-trans isomerase compare
Psyr_2051 +0.5 1.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1610 +0.5 2.5 ribosomal large subunit pseudouridine synthase A compare
Psyr_4086 +0.5 1.9 MscS Mechanosensitive ion channel compare
Psyr_2107 +0.5 1.8 Ribosome modulation factor compare
Psyr_1370 +0.5 2.1 tRNA pseudouridine synthase D, TruD compare
Psyr_0433 +0.5 1.9 Glycosyl transferase, family 2 compare
Psyr_4942 +0.5 1.9 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_2583 +0.5 2.1 diaminobutyrate aminotransferase apoenzyme compare
Psyr_1733 +0.5 1.1 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_0076 +0.5 1.8 Xanthine phosphoribosyltransferase compare
Psyr_3796 +0.5 1.4 transcriptional regulator, LysR family compare
Psyr_4628 +0.5 2.2 Protein of unknown function DUF525 compare
Psyr_2873 +0.5 1.6 Acyl-CoA dehydrogenase, C-terminal compare
Psyr_1581 +0.4 1.3 conserved hypothetical protein compare
Psyr_4479 +0.4 1.9 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase compare
Psyr_1801 +0.4 1.5 1-aminocyclopropane-1-carboxylate deaminase compare
Psyr_1187 +0.4 1.0 type III chaperone protein ShcE compare
Psyr_2620 +0.4 0.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1434 +0.4 1.0 Antibiotic biosynthesis monooxygenase compare
Psyr_1728 +0.4 1.7 tRNA--hydroxylase compare
Psyr_2984 +0.4 0.9 conserved hypothetical protein compare
Psyr_4789 +0.4 1.1 lipoprotein, putative compare
Psyr_3873 +0.4 1.9 ATP-dependent DNA ligase:ATP-dependent DNA ligase compare
Psyr_2926 +0.4 2.5 General substrate transporter:Major facilitator superfamily compare
Psyr_1895 +0.4 1.2 conserved hypothetical protein compare
Psyr_1448 +0.4 2.0 conserved hypothetical protein compare
Psyr_2788 +0.4 1.7 hypothetical protein compare
Psyr_1576 +0.4 1.4 Glutamine amidotransferase, class-II compare
Psyr_2274 +0.4 2.1 glutamate synthase (NADPH) GltB1 subunit compare
Psyr_1966 +0.4 1.3 Peptidase M19, renal dipeptidase compare
Psyr_2879 +0.4 1.1 VirK compare
Psyr_2393 +0.4 1.7 Flavin reductase-like protein compare
Psyr_1377 +0.4 1.1 CinA, C-terminal compare
Psyr_2225 +0.4 1.2 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_2370 +0.4 2.0 gluconolactonase compare
Psyr_3053 +0.4 1.3 conserved hypothetical protein compare
Psyr_3741 +0.4 2.1 Polyphosphate:AMP phosphotransferase compare
Psyr_4294 +0.4 0.9 Histone deacetylase family protein compare
Psyr_2374 +0.4 2.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2192 +0.4 2.0 transcriptional regulator, TetR family compare
Psyr_2588 +0.4 0.8 HpcH/HpaI aldolase compare
Psyr_2954 +0.4 1.9 Phospholipase/Carboxylesterase compare
Psyr_4481 +0.4 1.4 outer membrane transport energization protein ExbB compare
Psyr_2244 +0.4 0.9 DNA topoisomerase III compare
Psyr_0304 +0.4 1.9 ChaC-like protein compare
Psyr_1715 +0.4 2.2 Exodeoxyribonuclease I subunit D compare
Psyr_4693 +0.4 1.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3701 +0.4 1.0 thioredoxin, putative compare
Psyr_1457 +0.4 2.2 conserved hypothetical protein compare
Psyr_3578 +0.4 1.6 Major facilitator superfamily compare
Psyr_3801 +0.4 2.2 transcriptional regulator, LysR family compare
Psyr_0838 +0.4 1.1 Rieske [2Fe-2S] region compare
Psyr_1011 +0.4 1.5 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_1859 +0.4 1.0 conserved hypothetical protein compare
Psyr_5096 +0.4 1.5 hypothetical protein compare
Psyr_1624 +0.4 1.2 transcriptional regulator, MarR family compare
Psyr_0787 +0.4 1.9 Sulfate transporter/antisigma-factor antagonist STAS compare
Psyr_0032 +0.4 1.8 conserved hypothetical protein compare
Psyr_2253 +0.4 0.7 Phosphonate metabolism compare
Psyr_3095 +0.4 1.2 transport system permease protein compare
Psyr_0264 +0.4 1.4 Alginate biosynthesis sensor protein KinB compare
Psyr_2534 +0.4 1.5 Carboxymethylenebutenolidase compare
Psyr_1811 +0.4 0.7 transcriptional regulator, GntR family compare
Psyr_1807 +0.4 1.1 Allantoicase compare
Psyr_3545 +0.4 1.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_2563 +0.4 1.1 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_1450 +0.4 1.8 Plasmid conserved hypothetical protein, RAQPRD compare
Psyr_3850 +0.4 1.2 lipoprotein, putative compare
Psyr_0873 +0.4 2.0 GCN5-related N-acetyltransferase compare
Psyr_3228 +0.4 1.7 Glycosyl transferase, group 1 compare
Psyr_3597 +0.4 0.7 ABC transporter compare
Psyr_1936 +0.4 1.2 tRNA-U16,U17-dihydrouridine synthase compare
Psyr_1891 +0.4 1.6 hypothetical protein compare
Psyr_0267 +0.4 1.9 Endonuclease/exonuclease/phosphatase compare
Psyr_2745 +0.4 2.4 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit:Ornithine cyclodeaminase/mu-crystallin compare
Psyr_2694 +0.4 1.2 conserved hypothetical protein compare
Psyr_3874 +0.4 2.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_2270 +0.4 1.6 transferase hexapeptide repeat protein compare
Psyr_2556 +0.4 1.7 dCTP deaminase compare
Psyr_0248 +0.4 1.6 conserved hypothetical protein compare
Psyr_2744 +0.4 1.6 conserved hypothetical protein compare
Psyr_1683 +0.4 1.6 conserved hypothetical protein compare
Psyr_3128 +0.4 2.1 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2522 +0.4 1.5 conserved hypothetical protein compare
Psyr_3405 +0.4 1.6 Abortive infection protein compare
Psyr_2752 +0.4 0.9 conserved hypothetical protein compare
Psyr_1787 +0.4 1.8 L-sorbosone dehydrogenase compare
Psyr_2057 +0.4 1.3 acyl-CoA thioesterase II, putative compare
Psyr_2487 +0.4 1.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_0655 +0.4 1.6 conserved domain protein compare
Psyr_3608 +0.4 2.0 Pirin, N-terminal compare
Psyr_0875 +0.4 1.1 outer membrane transport energization protein TonB compare
Psyr_3672 +0.4 1.3 cobalamin-5'-phosphate synthase compare
Psyr_0167 +0.4 0.9 hypothetical protein compare
Psyr_2885 +0.4 1.6 xylose ABC transporter ATP-binding protein compare
Psyr_3039 +0.4 0.7 protein of unknown function DUF883 compare
Psyr_0784 +0.4 0.5 CheW-like protein compare
Psyr_3783 +0.4 1.2 conserved hypothetical protein compare
Psyr_4242 +0.4 2.4 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3050 +0.4 1.4 Aldo/keto reductase compare
Psyr_2478 +0.4 2.0 surface antigen (D15):Surface antigen variable number compare
Psyr_2208 +0.4 2.0 Amidase compare
Psyr_3476 +0.4 1.3 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_0446 +0.4 1.5 Malonate decarboxylase gamma subunit compare
Psyr_2867 +0.4 1.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_1893 +0.4 1.5 Isochorismatase hydrolase compare
Psyr_2830 +0.4 1.1 conserved hypothetical protein compare
Psyr_0781 +0.4 1.3 Protein-glutamate methylesterase compare
Psyr_2524 +0.3 1.6 conserved hypothetical protein compare
Psyr_4092 +0.3 1.4 Glutathione S-transferase, N-terminal compare
Psyr_1388 +0.3 1.6 Protein of unknown function UPF0066 compare
Psyr_3270 +0.3 2.0 AP endonuclease, family 2 compare
Psyr_4455 +0.3 0.7 conserved hypothetical protein compare
Psyr_2952 +0.3 1.7 NADP oxidoreductase, coenzyme F420-dependent compare
Psyr_3596 +0.3 1.3 Selenoprotein W-related protein compare
Psyr_1294 +0.3 1.0 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2414 +0.3 1.4 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 compare
Psyr_4774 +0.3 0.5 Hypothetical protein compare
Psyr_1391 +0.3 2.0 GCN5-related N-acetyltransferase compare
Psyr_4637 +0.3 1.8 acyl-phosphate glycerol-3-phosphate acyltransferase compare
Psyr_1755 +0.3 1.7 ABC transporter compare
Psyr_1658 +0.3 2.0 lipoprotein, putative compare
Psyr_2435 +0.3 1.2 Xylulokinase compare
Psyr_2299 +0.3 1.8 hypothetical protein compare
Psyr_4472 +0.3 1.7 lipoprotein, putative compare
Psyr_4880 +0.3 1.8 conserved hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Irigenin across organisms