Experiment set11IT053 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Glycine betaine (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS27370 -5.1 -13.6 anthranilate phosphoribosyltransferase compare
PFLU_RS20540 -4.8 -13.6 phosphoribosylanthranilate isomerase compare
PFLU_RS06055 -4.8 -3.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS02045 -4.7 -27.8 glutamate synthase large subunit compare
PFLU_RS00175 -4.6 -10.3 tryptophan synthase subunit alpha compare
PFLU_RS02050 -4.5 -20.9 NAD(P)-binding protein compare
PFLU_RS27365 -4.4 -12.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS00180 -4.4 -8.9 tryptophan synthase subunit beta compare
PFLU_RS01610 -4.3 -15.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS02365 -4.3 -14.9 glycosyltransferase compare
PFLU_RS01625 -4.2 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01605 -3.9 -11.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01685 -3.7 -6.4 nitrogen regulation protein NR(I) compare
PFLU_RS09055 -3.6 -2.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01620 -3.5 -12.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS10430 -3.4 -5.2 peptidase compare
PFLU_RS25715 -3.3 -11.3 RNA polymerase-binding protein DksA compare
PFLU_RS27475 -3.2 -8.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS20290 -3.2 -3.3 integration host factor subunit alpha compare
PFLU_RS22095 -3.1 -19.3 GTP diphosphokinase compare
PFLU_RS20565 -3.1 -15.8 3-isopropylmalate dehydrogenase compare
PFLU_RS20515 -3.1 -5.2 amidophosphoribosyltransferase compare
PFLU_RS28165 -3.1 -14.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS25585 -3.0 -4.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS20580 -3.0 -13.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS04470 -2.9 -13.2 histidinol dehydrogenase compare
PFLU_RS28695 -2.9 -6.1 phosphoglycerate dehydrogenase compare
PFLU_RS06310 -2.9 -9.4 sigma E protease regulator RseP compare
PFLU_RS25595 -2.9 -4.5 exodeoxyribonuclease V subunit gamma compare
PFLU_RS04465 -2.9 -9.1 ATP phosphoribosyltransferase compare
PFLU_RS02275 -2.8 -3.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS25760 -2.8 -13.6 glucose-6-phosphate isomerase compare
PFLU_RS15410 -2.8 -4.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS19165 -2.7 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS25640 -2.6 -12.9 ketol-acid reductoisomerase compare
PFLU_RS08505 -2.6 -7.6 protease HtpX compare
PFLU_RS28385 -2.6 -12.1 homoserine O-acetyltransferase compare
PFLU_RS02590 -2.5 -8.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20575 -2.5 -5.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS08165 -2.4 -3.7 acyl carrier protein compare
PFLU_RS28645 -2.4 -13.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28535 -2.4 -14.5 dihydroxy-acid dehydratase compare
PFLU_RS21740 -2.4 -7.5 Hpt domain-containing protein compare
PFLU_RS13540 -2.4 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25735 -2.3 -9.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS05020 -2.3 -2.5 DUF1120 domain-containing protein compare
PFLU_RS24765 -2.2 -14.7 2-isopropylmalate synthase compare
PFLU_RS19170 -2.2 -5.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS07230 -2.2 -10.7 RNA polymerase sigma factor RpoE compare
PFLU_RS01690 -2.2 -6.8 nitrogen regulation protein NR(II) compare
PFLU_RS30345 -2.2 -3.8 DUF2559 family protein compare
PFLU_RS28390 -2.2 -9.7 methionine biosynthesis protein MetW compare
PFLU_RS04150 -2.1 -6.7 DUF1043 family protein compare
PFLU_RS13580 -2.1 -4.9 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS00415 -2.0 -2.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS21495 -2.0 -3.9 TlpA family protein disulfide reductase compare
PFLU_RS20510 -2.0 -11.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24555 -2.0 -5.2 thioredoxin fold domain-containing protein compare
PFLU_RS04315 -2.0 -2.9 rod shape-determining protein MreD compare
PFLU_RS22595 -2.0 -3.9 OmpA family protein compare
PFLU_RS30530 -2.0 -7.5 acetyltransferase compare
PFLU_RS06320 -1.9 -3.6 OmpH family outer membrane protein compare
PFLU_RS23380 -1.9 -2.8 HAD-IB family hydrolase compare
PFLU_RS18505 -1.9 -8.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24090 -1.8 -4.9 Holliday junction branch migration protein RuvA compare
PFLU_RS08675 -1.8 -3.2 DsbE family thiol:disulfide interchange protein compare
PFLU_RS22520 -1.8 -3.4 GntR family transcriptional regulator compare
PFLU_RS07245 -1.8 -8.3 DegQ family serine endoprotease compare
PFLU_RS22740 -1.8 -5.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS06265 -1.8 -12.8 [protein-PII] uridylyltransferase compare
PFLU_RS26735 -1.8 -7.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS28655 -1.8 -10.9 HAD family hydrolase compare
PFLU_RS12975 -1.8 -4.6 DUF934 domain-containing protein compare
PFLU_RS08155 -1.7 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS21425 -1.7 -3.6 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS07640 -1.7 -9.2 universal stress protein compare
PFLU_RS27820 -1.7 -9.1 sarcosine oxidase subunit beta compare
PFLU_RS29885 -1.7 -8.5 LysR family transcriptional regulator compare
PFLU_RS22105 -1.7 -4.4 cysteine synthase CysM compare
PFLU_RS24205 -1.7 -2.6 DNA binding protein compare
PFLU_RS02370 -1.7 -7.3 glycosyltransferase compare
PFLU_RS01895 -1.7 -4.4 phosphoribosyl-ATP diphosphatase compare
PFLU_RS12980 -1.6 -7.2 nitrite/sulfite reductase compare
PFLU_RS18645 -1.6 -2.9 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS05880 -1.6 -5.0 CinA family protein compare
PFLU_RS02565 -1.5 -6.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS25740 -1.5 -5.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS08655 -1.5 -3.2 heme ABC transporter permease compare
PFLU_RS20765 -1.5 -2.1 hypothetical protein compare
PFLU_RS08180 -1.5 -4.8 ketoacyl-ACP synthase III compare
PFLU_RS29875 -1.5 -9.2 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS23445 -1.5 -2.6 DUF1003 domain-containing protein compare
PFLU_RS30525 -1.4 -7.6 SDR family oxidoreductase compare
PFLU_RS26660 -1.4 -2.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS04070 -1.4 -3.6 peptide chain release factor 3 compare
PFLU_RS00065 -1.4 -7.1 lysophospholipid acyltransferase compare
PFLU_RS24160 -1.4 -6.8 HAMP domain-containing protein compare
PFLU_RS07215 -1.4 -4.8 hypothetical protein compare
PFLU_RS08160 -1.4 -5.9 sugar transferase compare
PFLU_RS00395 -1.4 -8.6 DNA polymerase I compare
PFLU_RS24330 -1.4 -4.9 phosphogluconate dehydratase compare
PFLU_RS08185 -1.4 -7.3 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS18395 -1.4 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS27885 -1.3 -8.4 dimethylglycine demethylation protein DgcA compare
PFLU_RS27870 -1.3 -9.1 electron transfer flavoprotein subunit beta compare
PFLU_RS23725 -1.3 -8.7 glucose-6-phosphate dehydrogenase compare
PFLU_RS27810 -1.3 -9.1 sarcosine oxidase subunit alpha compare
PFLU_RS21665 -1.3 -5.3 MinD/ParA family protein compare
PFLU_RS27825 -1.3 -7.2 serine hydroxymethyltransferase compare
PFLU_RS25730 -1.3 -9.3 PAS domain S-box protein compare
PFLU_RS17060 -1.3 -1.9 monooxygenase compare
PFLU_RS27875 -1.3 -6.9 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS24095 -1.3 -3.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS29400 -1.3 -2.3 DUF1127 domain-containing protein compare
PFLU_RS02490 -1.3 -6.5 phosphoserine phosphatase SerB compare
PFLU_RS01390 -1.3 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS23585 -1.3 -5.5 GntP family permease compare
PFLU_RS25360 -1.3 -5.1 glutamate 5-kinase compare
PFLU_RS08190 -1.2 -9.1 polysaccharide biosynthesis protein compare
PFLU_RS00440 -1.2 -8.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS27880 -1.2 -5.5 dimethylglycine demethylation protein DgcB compare
PFLU_RS25755 -1.2 -3.0 pantoate--beta-alanine ligase compare
PFLU_RS02625 -1.2 -7.4 ribonuclease R compare
PFLU_RS07725 -1.2 -3.8 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS29880 -1.2 -7.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS19555 -1.2 -2.1 histidine phosphatase family protein compare
PFLU_RS19915 -1.2 -2.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS03970 -1.2 -5.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS31675 -1.2 -2.5 hypothetical protein compare
PFLU_RS01900 -1.2 -5.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS08660 -1.1 -2.1 heme exporter protein CcmD compare
PFLU_RS27805 -1.1 -2.4 sarcosine oxidase subunit gamma family protein compare
PFLU_RS25875 -1.1 -3.2 transcription elongation factor GreA compare
PFLU_RS12915 -1.1 -2.9 methyltransferase domain-containing protein compare
PFLU_RS02980 -1.1 -2.1 precorrin-8X methylmutase compare
PFLU_RS18735 -1.1 -1.6 hypothetical protein compare
PFLU_RS08125 -1.1 -2.7 integration host factor subunit beta compare
PFLU_RS27895 -1.1 -5.8 membrane dipeptidase compare
PFLU_RS28325 -1.1 -5.0 energy transducer TonB compare
PFLU_RS18530 -1.1 -3.3 DNA translocase FtsK compare
PFLU_RS08535 -1.1 -7.6 response regulator compare
PFLU_RS10980 -1.1 -3.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS02825 -1.1 -1.2 phosphate starvation-inducible protein PsiF compare
PFLU_RS12450 -1.1 -6.5 cyclic peptide export ABC transporter compare
PFLU_RS30520 -1.0 -4.3 ketoacyl-ACP synthase III compare
PFLU_RS27970 -1.0 -4.8 choline ABC transporter permease subunit compare
PFLU_RS10765 -1.0 -6.5 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS07785 -1.0 -6.4 VacJ family lipoprotein compare
PFLU_RS24785 -1.0 -5.9 outer membrane protein assembly factor BamB compare
PFLU_RS29515 -1.0 -6.2 RidA family protein compare
PFLU_RS01095 -1.0 -2.0 ribbon-helix-helix protein, CopG family compare
PFLU_RS25645 -1.0 -2.1 acetolactate synthase small subunit compare
PFLU_RS18640 -1.0 -3.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS11380 -1.0 -1.4 sarcosine oxidase subunit delta compare
PFLU_RS07645 -1.0 -2.8 hypothetical protein compare
PFLU_RS07275 -1.0 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS17580 -1.0 -2.2 repressor LexA compare
PFLU_RS13475 -1.0 -6.5 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS25955 -1.0 -0.9 hypothetical protein compare
PFLU_RS02455 -1.0 -1.4 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS27815 -0.9 -3.4 sarcosine oxidase subunit delta compare
PFLU_RS30160 -0.9 -2.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS24085 -0.9 -3.1 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS01960 -0.9 -1.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS08105 -0.9 -4.7 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS23920 -0.9 -1.7 septation protein A compare
PFLU_RS21110 -0.9 -1.2 AAA family ATPase compare
PFLU_RS31805 -0.9 -1.6 hypothetical protein compare
PFLU_RS15265 -0.9 -3.0 EAL domain-containing response regulator compare
PFLU_RS18655 -0.9 -2.5 NADH-quinone oxidoreductase subunit J compare
PFLU_RS31755 -0.9 -1.3 hypothetical protein compare
PFLU_RS24375 -0.9 -5.3 c-type cytochrome compare
PFLU_RS27865 -0.9 -5.1 glycine-betaine demethylase subunit GbcA compare
PFLU_RS31100 -0.9 -2.1 preprotein translocase subunit SecG compare
PFLU_RS04635 -0.9 -3.4 BON domain-containing protein compare
PFLU_RS03535 -0.9 -1.7 YscO family type III secretion system apparatus protein compare
PFLU_RS24025 -0.9 -5.4 quinolinate synthase NadA compare
PFLU_RS27860 -0.9 -4.0 glycine-betaine demethylase subunit GbcB compare
PFLU_RS18410 -0.8 -2.2 response regulator compare
PFLU_RS27890 -0.8 -4.8 hypothetical protein compare
PFLU_RS06045 -0.8 -3.3 purine-binding chemotaxis protein CheW compare
PFLU_RS23310 -0.8 -4.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS17545 -0.8 -1.4 DUF465 domain-containing protein compare
PFLU_RS01955 -0.8 -4.1 DUF971 domain-containing protein compare
PFLU_RS00870 -0.8 -1.0 hypothetical protein compare
PFLU_RS31535 -0.8 -1.7 hypothetical protein compare
PFLU_RS05780 -0.8 -5.4 helix-turn-helix transcriptional regulator compare
PFLU_RS23590 -0.8 -1.7 gluconokinase compare
PFLU_RS09305 -0.8 -5.8 hypothetical protein compare
PFLU_RS12725 -0.8 -2.3 GNAT family N-acetyltransferase compare
PFLU_RS27955 -0.8 -3.9 GlxA family transcriptional regulator compare
PFLU_RS18670 -0.8 -1.4 NADH-quinone oxidoreductase subunit M compare
PFLU_RS16390 -0.8 -1.3 DUF411 domain-containing protein compare
PFLU_RS20845 -0.8 -1.2 hypothetical protein compare
PFLU_RS03755 -0.8 -5.0 PDZ domain-containing protein compare
PFLU_RS29095 -0.8 -7.0 polyphosphate kinase 1 compare
PFLU_RS28895 -0.8 -1.2 DUF2388 domain-containing protein compare
PFLU_RS30165 -0.8 -3.7 ParA family protein compare
PFLU_RS23045 -0.8 -3.5 beta-ketoacyl-ACP synthase II compare
PFLU_RS04430 -0.8 -3.8 ATP-binding cassette domain-containing protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in stress experiments

For stress Sucrose across organisms