Experiment set11IT053 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Glycine betaine (N); with TAPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS14300 +1.1 2.2 response regulator transcription factor compare
PFLU_RS14440 +1.0 3.2 hypothetical protein compare
PFLU_RS18725 +1.0 1.7 alpha/beta hydrolase compare
PFLU_RS20335 +0.9 1.8 hypothetical protein compare
PFLU_RS14050 +0.8 1.5 hypothetical protein compare
PFLU_RS25025 +0.8 1.9 hypothetical protein compare
PFLU_RS31800 +0.8 1.7 hypothetical protein compare
PFLU_RS09500 +0.8 1.4 hypothetical protein compare
PFLU_RS18000 +0.8 1.5 AhpC/TSA family protein compare
PFLU_RS03075 +0.7 1.1 translation initiation factor Sui1 compare
PFLU_RS14195 +0.7 1.4 hypothetical protein compare
PFLU_RS05890 +0.7 1.2 recombination regulator RecX compare
PFLU_RS20345 +0.7 2.8 hypothetical protein compare
PFLU_RS05630 +0.7 1.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS13945 +0.7 1.2 hypothetical protein compare
PFLU_RS02690 +0.7 1.6 hypothetical protein compare
PFLU_RS26565 +0.7 1.6 rRNA maturation RNase YbeY compare
PFLU_RS17750 +0.6 2.4 pirin family protein compare
PFLU_RS17370 +0.6 2.8 hypothetical protein compare
PFLU_RS18095 +0.6 1.6 GlxA family transcriptional regulator compare
PFLU_RS15785 +0.6 1.9 type II secretion system protein GspH compare
PFLU_RS17950 +0.6 1.5 hypothetical protein compare
PFLU_RS14430 +0.6 1.9 arsenate reductase ArsC compare
PFLU_RS25570 +0.6 2.1 OmpA family protein compare
PFLU_RS31780 +0.6 1.5 hypothetical protein compare
PFLU_RS27985 +0.6 3.4 transcriptional regulator BetI compare
PFLU_RS22190 +0.6 0.6 hypothetical protein compare
PFLU_RS28735 +0.6 2.6 thiol-disulfide isomerase compare
PFLU_RS13120 +0.5 1.1 hypothetical protein compare
PFLU_RS05340 +0.5 1.4 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS13215 +0.5 1.9 LysR family transcriptional regulator compare
PFLU_RS04530 +0.5 0.9 hypothetical protein compare
PFLU_RS22195 +0.5 1.8 DEAD/DEAH box helicase compare
PFLU_RS25815 +0.5 1.3 transcription termination/antitermination protein NusA compare
PFLU_RS30535 +0.5 2.4 DUF2897 family protein compare
PFLU_RS18865 +0.5 1.7 Na+/H+ antiporter subunit G compare
PFLU_RS29745 +0.5 1.9 response regulator compare
PFLU_RS22320 +0.5 4.3 cytochrome-c oxidase, cbb3-type subunit I compare
PFLU_RS26345 +0.5 4.0 FecR family protein compare
PFLU_RS03540 +0.5 2.0 type III secretion protein compare
PFLU_RS03830 +0.5 1.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS23595 +0.5 4.0 LacI family DNA-binding transcriptional regulator compare
PFLU_RS26075 +0.5 2.0 IS66 family insertion sequence hypothetical protein compare
PFLU_RS04365 +0.5 2.2 hypothetical protein compare
PFLU_RS19050 +0.5 1.8 spore coat protein U domain-containing protein compare
PFLU_RS04835 +0.5 0.7 hypothetical protein compare
PFLU_RS11850 +0.5 1.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS05060 +0.5 1.8 GIY-YIG nuclease family protein compare
PFLU_RS19910 +0.5 1.3 hypothetical protein compare
PFLU_RS11415 +0.5 1.5 protein glxC compare
PFLU_RS24695 +0.5 1.0 PTS glucose transporter subunit IIB compare
PFLU_RS14690 +0.5 1.5 hypothetical protein compare
PFLU_RS13870 +0.5 2.1 DUF4411 family protein compare
PFLU_RS11285 +0.5 1.3 hypothetical protein compare
PFLU_RS00310 +0.5 0.8 twin transmembrane helix small protein compare
PFLU_RS21290 +0.5 1.7 hypothetical protein compare
PFLU_RS13350 +0.5 1.2 ParD-like family protein compare
PFLU_RS10555 +0.5 1.8 PhzF family phenazine biosynthesis protein compare
PFLU_RS17930 +0.5 2.3 UDP-glucose/GDP-mannose dehydrogenase family protein compare
PFLU_RS01315 +0.4 1.3 Hsp33 family molecular chaperone HslO compare
PFLU_RS22365 +0.4 2.3 membrane protein compare
PFLU_RS20955 +0.4 0.6 DUF1028 domain-containing protein compare
PFLU_RS26930 +0.4 1.9 DUF2796 domain-containing protein compare
PFLU_RS14290 +0.4 1.7 response regulator compare
PFLU_RS03575 +0.4 1.4 hypothetical protein compare
PFLU_RS15310 +0.4 1.5 YgdI/YgdR family lipoprotein compare
PFLU_RS24305 +0.4 0.7 antibiotic biosynthesis monooxygenase compare
PFLU_RS00475 +0.4 1.9 MCE family protein compare
PFLU_RS03570 +0.4 0.8 hypothetical protein compare
PFLU_RS00875 +0.4 1.8 hypothetical protein compare
PFLU_RS00210 +0.4 1.2 OsmC family protein compare
PFLU_RS24680 +0.4 1.2 NIF3 1 compare
PFLU_RS26855 +0.4 1.9 cobalamin-binding protein compare
PFLU_RS18975 +0.4 3.3 gamma-carboxygeranoyl-CoA hydratase compare
PFLU_RS12840 +0.4 1.1 3-hydroxybutyrate dehydrogenase compare
PFLU_RS27420 +0.4 1.8 response regulator transcription factor compare
PFLU_RS16885 +0.4 1.9 DMT family transporter compare
PFLU_RS15420 +0.4 1.2 hypothetical protein compare
PFLU_RS21525 +0.4 2.9 RNA polymerase factor sigma-70 compare
PFLU_RS24320 +0.4 2.1 response regulator transcription factor compare
PFLU_RS15000 +0.4 1.5 HAMP domain-containing histidine kinase compare
PFLU_RS25785 +0.4 1.9 BON domain-containing protein compare
PFLU_RS21770 +0.4 2.7 flagellar motor switch protein FliG compare
PFLU_RS09010 +0.4 2.7 dienelactone hydrolase family protein compare
PFLU_RS00745 +0.4 2.1 poly-beta-1,6 N-acetyl-D-glucosamine synthase compare
PFLU_RS03055 +0.4 1.4 methyl-accepting chemotaxis protein compare
PFLU_RS14715 +0.4 2.4 protein-glutamate O-methyltransferase CheR compare
PFLU_RS19935 +0.4 0.5 type II secretion system protein GspF compare
PFLU_RS21700 +0.4 2.1 flagellar type III secretion system protein FliR compare
PFLU_RS06165 +0.4 1.3 hypothetical protein compare
PFLU_RS03555 +0.4 0.5 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS17265 +0.4 0.6 hypothetical protein compare
PFLU_RS29780 +0.4 2.0 acyl-CoA thioesterase compare
PFLU_RS20825 +0.4 3.1 VOC family protein compare
PFLU_RS18515 +0.4 0.7 fluoride efflux transporter CrcB compare
PFLU_RS22335 +0.4 2.9 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS22325 +0.4 2.9 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS11475 +0.4 0.7 histidine kinase compare
PFLU_RS07665 +0.4 0.9 type I DNA topoisomerase compare
PFLU_RS24340 +0.4 2.0 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS26595 +0.4 1.2 lipoprotein compare
PFLU_RS19830 +0.4 1.3 type VI secretion system tube protein Hcp compare
PFLU_RS29070 +0.4 2.1 hypothetical protein compare
PFLU_RS25120 +0.4 0.8 response regulator compare
PFLU_RS23675 +0.4 0.9 hypothetical protein compare
PFLU_RS26950 +0.4 2.6 outer membrane beta-barrel protein compare
PFLU_RS00410 +0.4 2.8 cytochrome c4 compare
PFLU_RS00530 +0.4 0.4 DUF2388 domain-containing protein compare
PFLU_RS23220 +0.4 1.5 tRNA-Arg compare
PFLU_RS15950 +0.4 1.2 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
PFLU_RS15915 +0.4 1.7 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
PFLU_RS15745 +0.4 1.2 type II secretion system ATPase GspE compare
PFLU_RS13690 +0.4 2.2 AAA family ATPase compare
PFLU_RS07775 +0.4 1.7 DUF4404 family protein compare
PFLU_RS07075 +0.4 2.3 tRNA-Gly compare
PFLU_RS19805 +0.4 1.3 LysR family transcriptional regulator compare
PFLU_RS18700 +0.4 0.9 hypothetical protein compare
PFLU_RS10585 +0.4 1.6 CoA transferase subunit A compare
PFLU_RS04200 +0.4 2.9 cytochrome bc complex cytochrome b subunit compare
PFLU_RS07995 +0.4 1.7 aspartate aminotransferase family protein compare
PFLU_RS21845 +0.4 2.3 flagellar basal body P-ring protein FlgI compare
PFLU_RS18595 +0.4 1.3 cupin domain-containing protein compare
PFLU_RS01750 +0.4 1.2 hypothetical protein compare
PFLU_RS21775 +0.4 2.8 flagellar basal body M-ring protein FliF compare
PFLU_RS19475 +0.4 1.6 Zn-dependent hydrolase compare
PFLU_RS04415 +0.4 1.5 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS31510 +0.4 0.7 transcriptional regulator compare
PFLU_RS02875 +0.4 1.7 urease subunit gamma compare
PFLU_RS02790 +0.4 0.4 TetR family transcriptional regulator compare
PFLU_RS11385 +0.4 2.4 FAD-dependent oxidoreductase compare
PFLU_RS28960 +0.4 1.7 cell division protein ZapA compare
PFLU_RS09845 +0.4 0.7 biotin carboxyl carrier domain-containing protein compare
PFLU_RS03995 +0.4 0.6 hypothetical protein compare
PFLU_RS11340 +0.3 2.0 RraA family protein compare
PFLU_RS30725 +0.3 1.6 DUF1652 domain-containing protein compare
PFLU_RS25010 +0.3 1.9 cupin domain-containing protein compare
PFLU_RS13605 +0.3 1.2 DUF4880 domain-containing protein compare
PFLU_RS08885 +0.3 1.9 DUF808 domain-containing protein compare
PFLU_RS26905 +0.3 2.3 transcriptional regulator NrdR compare
PFLU_RS25080 +0.3 2.2 two-component sensor histidine kinase compare
PFLU_RS15095 +0.3 2.1 APC family permease compare
PFLU_RS12685 +0.3 1.4 hypothetical protein compare
PFLU_RS15575 +0.3 1.6 fumarylacetoacetate hydrolase family protein compare
PFLU_RS16520 +0.3 1.8 hypothetical protein compare
PFLU_RS21955 +0.3 1.7 hypothetical protein compare
PFLU_RS05200 +0.3 1.5 glutaredoxin family protein compare
PFLU_RS31310 +0.3 1.0 phage tail protein compare
PFLU_RS08415 +0.3 1.9 elongation factor GreAB compare
PFLU_RS30670 +0.3 1.3 DUF4102 domain-containing protein compare
PFLU_RS25355 +0.3 2.1 CreA family protein compare
PFLU_RS22530 +0.3 1.2 DUF469 domain-containing protein compare
PFLU_RS28820 +0.3 0.5 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS17745 +0.3 2.1 mechanosensitive ion channel compare
PFLU_RS08530 +0.3 1.8 MarR family transcriptional regulator compare
PFLU_RS00155 +0.3 2.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS12730 +0.3 1.7 hypothetical protein compare
PFLU_RS02920 +0.3 2.1 ABC transporter substrate-binding protein compare
PFLU_RS19855 +0.3 1.2 DUF4398 domain-containing protein compare
PFLU_RS31425 +0.3 0.3 hypothetical protein compare
PFLU_RS21465 +0.3 1.8 MbtH family protein compare
PFLU_RS06530 +0.3 1.1 collagen-like triple helix repeat-containing protein compare
PFLU_RS22380 +0.3 1.7 sulfite exporter TauE/SafE family protein compare
PFLU_RS29445 +0.3 1.9 JAB domain-containing protein compare
PFLU_RS21370 +0.3 1.4 LysE family translocator compare
PFLU_RS04135 +0.3 2.4 HAMP domain-containing histidine kinase compare
PFLU_RS18990 +0.3 1.7 DUF3077 domain-containing protein compare
PFLU_RS23360 +0.3 1.5 DUF2790 domain-containing protein compare
PFLU_RS23170 +0.3 1.8 flagellar hook assembly protein FlgD compare
PFLU_RS30880 +0.3 1.4 type VI secretion system baseplate subunit TssE compare
PFLU_RS20330 +0.3 1.0 cold-shock protein compare
PFLU_RS21590 +0.3 1.6 hypothetical protein compare
PFLU_RS19745 +0.3 1.0 acetylornithine deacetylase compare
PFLU_RS12620 +0.3 1.7 sugar ABC transporter substrate-binding protein compare
PFLU_RS20025 +0.3 0.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS28340 +0.3 0.9 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
PFLU_RS23800 +0.3 1.5 amino acid transporter compare
PFLU_RS07845 +0.3 1.9 hypothetical protein compare
PFLU_RS31305 +0.3 1.0 cell wall hydrolase compare
PFLU_RS29105 +0.3 2.5 DedA family protein compare
PFLU_RS27400 +0.3 1.5 ABC transporter permease compare
PFLU_RS15615 +0.3 1.6 helix-turn-helix domain-containing protein compare
PFLU_RS11805 +0.3 1.5 DoxX family protein compare
PFLU_RS14000 +0.3 1.0 hypothetical protein compare
PFLU_RS21660 +0.3 2.5 RNA polymerase sigma factor FliA compare
PFLU_RS04780 +0.3 0.7 hypothetical protein compare
PFLU_RS14265 +0.3 1.4 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS10865 +0.3 1.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02795 +0.3 1.6 hypothetical protein compare
PFLU_RS28180 +0.3 2.0 DEAD/DEAH box helicase compare
PFLU_RS27915 +0.3 1.1 DUF3010 family protein compare
PFLU_RS21635 +0.3 1.8 flagellar motor protein compare
PFLU_RS01110 +0.3 1.4 AAA family ATPase compare
PFLU_RS01930 +0.3 1.6 phasin family protein compare
PFLU_RS06120 +0.3 1.9 DUF4398 domain-containing protein compare
PFLU_RS09960 +0.3 1.1 DUF1232 domain-containing protein compare
PFLU_RS26580 +0.3 1.5 YdcF family protein compare
PFLU_RS08745 +0.3 1.9 phosphonate ABC transporter substrate-binding protein compare
PFLU_RS10505 +0.3 1.1 DUF1993 domain-containing protein compare
PFLU_RS17880 +0.3 1.2 WcaI family glycosyltransferase compare
PFLU_RS31380 +0.3 2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in stress experiments

For stress Sucrose across organisms