Experiment set11IT051 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 0.25mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5113 -5.7 -4.0 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_5115 -5.6 -3.3 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_5476 -5.5 -2.2 hypothetical protein compare
Pf1N1B4_5666 -5.2 -2.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_3501 -4.8 -10.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_2880 -4.8 -13.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_4041 -4.7 -4.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_15 -4.5 -4.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_6 -4.5 -4.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1535 -4.5 -4.5 hypothetical protein compare
Pf1N1B4_2224 -4.4 -2.3 FIG00953390: hypothetical protein compare
Pf1N1B4_4028 -4.3 -3.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2547 -4.3 -2.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_13 -4.2 -3.9 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2384 -4.2 -12.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_188 -4.1 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2112 -4.1 -17.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1610 -4.0 -5.3 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_769 -4.0 -7.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2272 -3.9 -4.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_4029 -3.9 -4.3 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2005 -3.9 -2.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_600 -3.8 -8.6 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_12 -3.8 -8.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2145 -3.7 -1.0 Translation initiation inhibitor compare
Pf1N1B4_2854 -3.7 -5.1 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_2893 -3.7 -10.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_419 -3.7 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_1624 -3.7 -10.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1534 -3.6 -20.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5116 -3.6 -6.3 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
Pf1N1B4_1668 -3.6 -6.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_4038 -3.6 -2.2 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_338 -3.6 -3.6 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_5014 -3.6 -2.8 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_2548 -3.6 -6.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_5619 -3.6 -4.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_2493 -3.5 -3.4 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2338 -3.5 -9.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2303 -3.5 -12.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3506 -3.5 -10.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1 -3.5 -2.6 Colicin V production protein compare
Pf1N1B4_3443 -3.4 -2.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_3273 -3.4 -2.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_58 -3.4 -8.9 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2284 -3.4 -5.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_5665 -3.4 -6.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_27 -3.4 -5.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_2282 -3.4 -11.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_623 -3.4 -2.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_337 -3.3 -7.0 O-antigen export system permease protein RfbD compare
Pf1N1B4_4004 -3.3 -1.9 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_2879 -3.3 -7.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_4030 -3.3 -3.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1626 -3.3 -7.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5111 -3.3 -4.6 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf1N1B4_1533 -3.3 -11.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_742 -3.2 -10.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2105 -3.2 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4065 -3.2 -8.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4250 -3.2 -2.7 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1611 -3.2 -4.1 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2878 -3.2 -6.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_4212 -3.2 -2.2 Gfa-like protein compare
Pf1N1B4_2009 -3.2 -7.0 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_339 -3.2 -2.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3498 -3.1 -3.2 FIG00953240: hypothetical protein compare
Pf1N1B4_5187 -3.1 -1.2 5S RNA compare
Pf1N1B4_2545 -3.0 -12.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_336 -3.0 -16.3 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_2048 -3.0 -2.2 hypothetical protein compare
Pf1N1B4_2884 -2.9 -6.5 Paraquat-inducible protein A compare
Pf1N1B4_2642 -2.9 -3.0 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_2858 -2.9 -12.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2004 -2.9 -2.4 putative membrane protein compare
Pf1N1B4_974 -2.9 -4.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1625 -2.9 -3.8 FIG00956267: hypothetical protein compare
Pf1N1B4_1869 -2.9 -9.3 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_1679 -2.9 -2.3 Membrane-fusion protein compare
Pf1N1B4_2273 -2.9 -7.1 hypothetical protein compare
Pf1N1B4_335 -2.8 -13.9 Glycosyltransferase compare
Pf1N1B4_3081 -2.8 -19.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1492 -2.8 -1.1 FIG00959437: hypothetical protein compare
Pf1N1B4_2010 -2.8 -7.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_3364 -2.8 -3.1 Cyn operon transcriptional activator compare
Pf1N1B4_2352 -2.8 -7.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1052 -2.8 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_4830 -2.8 -2.2 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_1234 -2.8 -4.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2488 -2.7 -7.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1830 -2.7 -9.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_606 -2.7 -2.5 Iron siderophore sensor protein compare
Pf1N1B4_1315 -2.7 -6.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2377 -2.6 -7.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_753 -2.6 -3.7 hypothetical protein compare
Pf1N1B4_3751 -2.6 -1.8 FIG00953060: hypothetical protein compare
Pf1N1B4_847 -2.6 -7.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2011 -2.6 -8.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5622 -2.6 -2.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_164 -2.6 -1.9 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_3742 -2.5 -2.0 Oxidoreductase, zinc-binding compare
Pf1N1B4_2090 -2.5 -3.6 FIG00959590: hypothetical protein compare
Pf1N1B4_4042 -2.5 -5.4 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_3905 -2.5 -4.7 FIG00953423: hypothetical protein compare
Pf1N1B4_1408 -2.5 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_4035 -2.5 -2.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_4040 -2.5 -2.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1872 -2.5 -9.1 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_2489 -2.5 -3.8 Biotin synthesis protein BioH compare
Pf1N1B4_2208 -2.5 -5.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1958 -2.5 -1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1067 -2.5 -3.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4108 -2.5 -2.2 Hydrolase, alpha/beta fold family compare
Pf1N1B4_1617 -2.5 -7.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1434 -2.4 -6.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3627 -2.4 -2.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_4835 -2.4 -2.5 Carbon starvation protein A compare
Pf1N1B4_716 -2.4 -2.9 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_2453 -2.4 -1.6 hypothetical protein compare
Pf1N1B4_2526 -2.4 -12.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4403 -2.4 -2.5 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_3720 -2.4 -7.8 Long-chain fatty acid transport protein compare
Pf1N1B4_1831 -2.4 -8.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2709 -2.4 -3.9 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_1906 -2.3 -4.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4087 -2.3 -3.0 MISCELLANEOUS; Unknown compare
Pf1N1B4_218 -2.3 -5.5 Periplasmic binding protein compare
Pf1N1B4_2337 -2.3 -3.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1613 -2.3 -2.0 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_3833 -2.3 -7.8 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3143 -2.3 -2.7 RecA protein compare
Pf1N1B4_2106 -2.3 -3.1 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_2491 -2.3 -2.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2244 -2.3 -1.6 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_2549 -2.2 -5.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_3826 -2.2 -8.1 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf1N1B4_2609 -2.2 -10.1 Catalase (EC 1.11.1.6) compare
Pf1N1B4_1627 -2.2 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2668 -2.2 -8.1 DedA protein compare
Pf1N1B4_1057 -2.2 -2.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1870 -2.2 -3.0 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_762 -2.2 -6.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2750 -2.2 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1565 -2.2 -2.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2478 -2.2 -7.2 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_2280 -2.2 -8.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2850 -2.2 -7.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_731 -2.2 -1.8 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_5927 -2.1 -14.5 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_1554 -2.1 -6.5 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_763 -2.1 -4.2 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_340 -2.1 -8.4 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_5957 -2.1 -1.9 Arsenical resistance operon repressor compare
Pf1N1B4_350 -2.1 -4.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_5722 -2.1 -1.5 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_3518 -2.1 -2.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3130 -2.1 -2.5 Bacteriophage protein GP46 compare
Pf1N1B4_3363 -2.1 -6.3 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase compare
Pf1N1B4_1614 -2.1 -2.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_3785 -2.1 -1.3 FOG: Ankyrin repeat compare
Pf1N1B4_2169 -2.0 -2.5 FIG00953808: hypothetical protein compare
Pf1N1B4_108 -2.0 -2.0 FIG00954456: hypothetical protein compare
Pf1N1B4_5652 -2.0 -2.2 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4614 -2.0 -4.1 Membrane alanine aminopeptidase N (EC 3.4.11.2) compare
Pf1N1B4_2042 -2.0 -4.5 Phosphate regulon metal ion transporter containing CBS domains compare
Pf1N1B4_1508 -2.0 -1.9 Lysophospholipid acyltransferase compare
Pf1N1B4_730 -2.0 -5.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_958 -2.0 -1.8 Stringent starvation protein B compare
Pf1N1B4_189 -2.0 -3.6 Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein compare
Pf1N1B4_5059 -2.0 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_5448 -2.0 -1.8 hypothetical protein compare
Pf1N1B4_4485 -2.0 -1.4 membrane protein, putative compare
Pf1N1B4_3073 -1.9 -4.2 probable glucosyl transferase compare
Pf1N1B4_5112 -1.9 -1.8 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_5939 -1.9 -2.4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_2177 -1.9 -0.7 FIG00953342: hypothetical protein compare
Pf1N1B4_262 -1.9 -11.7 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_1024 -1.9 -3.6 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_898 -1.9 -7.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_77 -1.9 -2.9 FIG00956064: hypothetical protein compare
Pf1N1B4_2886 -1.9 -8.7 Paraquat-inducible protein B compare
Pf1N1B4_4533 -1.9 -2.1 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_3789 -1.9 -3.6 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_4055 -1.9 -6.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_2283 -1.9 -1.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4043 -1.9 -2.9 Type II and III secretion system family protein compare
Pf1N1B4_3764 -1.9 -2.1 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_1311 -1.9 -3.5 Probable transmembrane protein compare
Pf1N1B4_718 -1.8 -6.7 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_1754 -1.8 -3.1 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
Pf1N1B4_3993 -1.8 -3.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_5938 -1.8 -4.3 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf1N1B4_2739 -1.8 -1.6 acetyltransferase, GNAT family compare
Pf1N1B4_257 -1.8 -4.7 sensor histidine kinase/response regulator compare
Pf1N1B4_327 -1.8 -1.9 hypothetical protein compare
Pf1N1B4_5982 -1.8 -4.7 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_1837 -1.8 -1.2 Osmotically inducible protein C compare
Pf1N1B4_2939 -1.8 -5.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_364 -1.8 -2.5 Rhodanese domain protein UPF0176 compare
Pf1N1B4_5949 -1.7 -1.5 Phosphomannomutase (EC 5.4.2.8) compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms