Experiment set11IT051 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 0.25mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_3590 +3.7 22.2 hypothetical protein compare
Pf1N1B4_3591 +3.7 25.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_4051 +2.7 7.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_1441 +2.4 15.4 Putative esterase, FIGfam005057 compare
Pf1N1B4_5930 +2.1 10.4 Exopolysaccharide production protein ExoZ compare
Pf1N1B4_2401 +2.1 2.5 Lipoprotein, putative compare
Pf1N1B4_4636 +2.0 5.2 TPR domain protein in aerotolerance operon compare
Pf1N1B4_1570 +1.9 6.2 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_1882 +1.9 17.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf1N1B4_4640 +1.8 6.4 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_72 +1.8 2.9 Transcriptional regulator, LysR family compare
Pf1N1B4_3508 +1.8 4.8 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_3917 +1.8 5.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3375 +1.7 12.8 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf1N1B4_1008 +1.7 2.2 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_1472 +1.7 2.3 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_3362 +1.7 3.6 Multidrug resistance protein B compare
Pf1N1B4_3483 +1.7 5.0 Transcriptional regulatory protein PhoP compare
Pf1N1B4_1263 +1.7 2.7 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_4007 +1.7 2.4 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_888 +1.6 6.0 Transglycosylase, Slt family compare
Pf1N1B4_5591 +1.6 2.2 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_1468 +1.6 12.4 InaA protein compare
Pf1N1B4_1889 +1.6 11.7 Fused spore maturation proteins A and B compare
Pf1N1B4_3800 +1.6 2.4 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_904 +1.6 3.7 DNA-binding protein HU-beta compare
Pf1N1B4_2783 +1.5 2.3 Transcription elongation factor GreB-related protein compare
Pf1N1B4_5920 +1.5 3.3 Transcriptional regulator, AraC family compare
Pf1N1B4_1866 +1.5 5.3 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_901 +1.5 2.8 hypothetical protein compare
Pf1N1B4_1469 +1.5 12.4 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_1475 +1.5 6.0 FIG00962376: hypothetical protein compare
Pf1N1B4_3546 +1.5 2.4 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_969 +1.5 13.5 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_656 +1.4 7.7 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_2724 +1.4 6.5 Transcriptional regulator, AsnC family compare
Pf1N1B4_1750 +1.4 1.3 Death on curing protein, Doc toxin compare
Pf1N1B4_5791 +1.4 2.6 hypothetical protein compare
Pf1N1B4_2860 +1.4 6.2 FIG00954153: hypothetical protein compare
Pf1N1B4_3246 +1.4 3.0 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_1180 +1.4 1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_1691 +1.3 0.8 hypothetical protein compare
Pf1N1B4_1568 +1.3 3.8 Twin-arginine translocation protein TatB compare
Pf1N1B4_883 +1.3 1.8 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_1465 +1.3 8.0 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_4544 +1.3 1.7 Uncharacterized protein ImpA compare
Pf1N1B4_538 +1.3 1.2 hypothetical protein compare
Pf1N1B4_6028 +1.3 3.6 FIG00954052: hypothetical protein compare
Pf1N1B4_5239 +1.3 2.6 hypothetical protein compare
Pf1N1B4_1347 +1.3 3.6 Urea ABC transporter, ATPase protein UrtE compare
Pf1N1B4_1528 +1.3 2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_69 +1.3 2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_532 +1.3 2.2 Transcriptional regulators, LysR family compare
Pf1N1B4_3229 +1.3 4.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3408 +1.2 1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_5708 +1.2 2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_4771 +1.2 3.1 Probable transmembrane protein compare
Pf1N1B4_4027 +1.2 1.6 hypothetical protein compare
Pf1N1B4_970 +1.2 7.9 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_3685 +1.2 3.3 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_5760 +1.2 2.4 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_3708 +1.2 1.6 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf1N1B4_971 +1.2 9.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_2857 +1.2 2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_5745 +1.2 1.9 FIG139928: Putative protease compare
Pf1N1B4_1116 +1.2 7.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_4017 +1.2 1.6 DNA-binding heavy metal response regulator compare
Pf1N1B4_2544 +1.2 6.1 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf1N1B4_5995 +1.2 1.4 Transporter, MFS superfamily compare
Pf1N1B4_909 +1.2 3.0 Ketosteroid isomerase-related protein compare
Pf1N1B4_5151 +1.2 1.3 FIG002283: Isochorismatase family protein compare
Pf1N1B4_4584 +1.1 2.7 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_3828 +1.1 6.0 Ribonuclease E inhibitor RraA compare
Pf1N1B4_4857 +1.1 4.1 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_4136 +1.1 2.4 hypothetical protein compare
Pf1N1B4_1868 +1.1 6.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4594 +1.1 1.3 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_290 +1.1 9.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5653 +1.1 3.4 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_973 +1.1 9.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_1335 +1.1 3.6 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_4425 +1.1 2.5 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_1278 +1.1 2.8 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily compare
Pf1N1B4_4271 +1.1 1.8 Hydrogen cyanide synthase HcnC / Opine oxidase subunit B compare
Pf1N1B4_3147 +1.1 6.3 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf1N1B4_3827 +1.1 5.0 Esterase/lipase/thioesterase family protein compare
Pf1N1B4_3012 +1.1 3.2 Thiol:disulfide interchange protein DsbC compare
Pf1N1B4_6041 +1.1 1.2 Carbon storage regulator compare
Pf1N1B4_2776 +1.1 1.8 Transcriptional regulator, GntR family compare
Pf1N1B4_2845 +1.1 3.6 FIG00953066: hypothetical protein compare
Pf1N1B4_2759 +1.1 2.4 MFS general substrate transporter compare
Pf1N1B4_3966 +1.1 1.6 serine/threonine protein kinase compare
Pf1N1B4_2835 +1.1 2.1 hypothetical protein compare
Pf1N1B4_959 +1.1 8.7 Stringent starvation protein A compare
Pf1N1B4_3389 +1.1 4.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf1N1B4_4435 +1.1 2.4 Inner membrane protein compare
Pf1N1B4_1334 +1.1 1.2 FIG00955840: hypothetical protein compare
Pf1N1B4_1329 +1.1 3.8 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_34 +1.1 1.7 Xanthine permease compare
Pf1N1B4_237 +1.0 1.7 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_5000 +1.0 2.5 D-glycerate transporter (predicted) compare
Pf1N1B4_3980 +1.0 2.0 Transcriptional regulator, HxlR family compare
Pf1N1B4_5866 +1.0 3.6 ThiJ/PfpI family protein compare
Pf1N1B4_1170 +1.0 1.7 hypothetical protein compare
Pf1N1B4_157 +1.0 2.0 ThiJ/PfpI family protein compare
Pf1N1B4_2035 +1.0 4.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_3819 +1.0 3.6 Methylisocitrate lyase (EC 4.1.3.30) compare
Pf1N1B4_4334 +1.0 2.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_5772 +1.0 1.9 Heme d1 biosynthesis protein NirJ compare
Pf1N1B4_972 +1.0 9.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_2651 +1.0 3.1 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_282 +1.0 2.3 Transcription elongation factor compare
Pf1N1B4_150 +1.0 2.9 SyrP-like protein compare
Pf1N1B4_5860 +1.0 2.1 Two-component response regulator compare
Pf1N1B4_1545 +1.0 5.4 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_649 +1.0 2.8 Small-conductance mechanosensitive channel compare
Pf1N1B4_1247 +1.0 2.3 transcriptional regulator, MerR family compare
Pf1N1B4_4177 +1.0 1.0 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_1005 +1.0 1.6 probable membrane protein YPO0899 compare
Pf1N1B4_293 +1.0 4.1 hypothetical protein compare
Pf1N1B4_1586 +1.0 6.4 Purine-cytosine permease compare
Pf1N1B4_1561 +1.0 1.9 FIG00954300: hypothetical protein compare
Pf1N1B4_2036 +1.0 2.3 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_1194 +1.0 2.0 hypothetical protein compare
Pf1N1B4_2715 +1.0 3.5 hypothetical protein compare
Pf1N1B4_5284 +1.0 1.2 hypothetical protein compare
Pf1N1B4_4806 +1.0 1.7 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_3613 +1.0 1.5 hypothetical protein compare
Pf1N1B4_398 +1.0 3.9 Galactonate dehydratase (EC 4.2.1.6) compare
Pf1N1B4_2413 +1.0 1.7 Permeases of the major facilitator superfamily compare
Pf1N1B4_4106 +1.0 2.5 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_4715 +1.0 2.2 Transcriptional regulator compare
Pf1N1B4_590 +1.0 5.1 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_2123 +1.0 3.2 hypothetical protein compare
Pf1N1B4_3804 +1.0 1.5 Glycine-rich cell wall structural protein precursor compare
Pf1N1B4_4669 +1.0 1.4 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_3054 +1.0 2.3 FIG00953063: hypothetical protein compare
Pf1N1B4_1654 +1.0 1.6 hypothetical protein compare
Pf1N1B4_3499 +1.0 0.7 hypothetical protein compare
Pf1N1B4_4422 +1.0 1.5 ABC transporter amino acid-binding protein compare
Pf1N1B4_2209 +1.0 6.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2947 +1.0 3.2 Restriction endonuclease compare
Pf1N1B4_1457 +1.0 4.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_1517 +1.0 2.2 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf1N1B4_5912 +1.0 1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4975 +1.0 2.4 hypothetical protein compare
Pf1N1B4_1271 +1.0 3.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_4293 +1.0 1.0 hypothetical protein compare
Pf1N1B4_5673 +1.0 2.7 Sterol desaturase compare
Pf1N1B4_4880 +1.0 1.6 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Pf1N1B4_4368 +1.0 1.9 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_4343 +1.0 1.4 hypothetical protein compare
Pf1N1B4_740 +1.0 1.8 Leucyl-tRNA synthetase compare
Pf1N1B4_5597 +1.0 2.3 FIG005548: transport protein compare
Pf1N1B4_3684 +0.9 3.9 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_3840 +0.9 2.5 Response regulator NasT compare
Pf1N1B4_106 +0.9 3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5917 +0.9 1.0 Multimeric flavodoxin WrbA compare
Pf1N1B4_2021 +0.9 0.9 hypothetical protein compare
Pf1N1B4_691 +0.9 1.4 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_4480 +0.9 1.7 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Pf1N1B4_1583 +0.9 1.9 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf1N1B4_4745 +0.9 1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_2618 +0.9 3.3 FIG00955711: hypothetical protein compare
Pf1N1B4_3829 +0.9 6.7 Magnesium and cobalt transport protein CorA compare
Pf1N1B4_885 +0.9 2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4166 +0.9 1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_5361 +0.9 3.4 hypothetical protein compare
Pf1N1B4_2140 +0.9 1.0 FIG00957579: hypothetical protein compare
Pf1N1B4_366 +0.9 5.0 FIG00954136: hypothetical protein compare
Pf1N1B4_5812 +0.9 1.5 FIG00955248: hypothetical protein compare
Pf1N1B4_2551 +0.9 2.3 Vfr transcriptional regulator / Cyclic AMP receptor protein compare
Pf1N1B4_5768 +0.9 1.7 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_1464 +0.9 3.6 Glycosyl transferase compare
Pf1N1B4_4784 +0.9 2.6 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases compare
Pf1N1B4_3703 +0.9 1.7 NLP/P60 family protein compare
Pf1N1B4_3325 +0.9 1.2 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_388 +0.9 3.2 OmpA family protein compare
Pf1N1B4_4242 +0.9 1.8 cell processes; transport of small molecules; amino acids, amines, peptides compare
Pf1N1B4_5136 +0.9 3.6 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_491 +0.9 2.7 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf1N1B4_4863 +0.9 2.4 Outer membrane protein OprN compare
Pf1N1B4_596 +0.9 3.6 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_1660 +0.9 1.8 FIG00953324: hypothetical protein compare
Pf1N1B4_4776 +0.9 1.7 Nicotinamidase (EC 3.5.1.19) compare
Pf1N1B4_376 +0.9 3.4 Deblocking aminopeptidase (EC 3.4.11.-) @ Cyanophycinase 2 (EC 3.4.15.6) compare
Pf1N1B4_1147 +0.9 3.3 Fructose repressor FruR, LacI family compare
Pf1N1B4_1695 +0.9 1.1 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_276 +0.9 1.7 Organic hydroperoxide resistance protein compare
Pf1N1B4_816 +0.9 2.3 Integral membrane protein compare
Pf1N1B4_4509 +0.9 0.9 Aldose 1-epimerase compare
Pf1N1B4_2044 +0.9 4.1 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf1N1B4_3278 +0.9 1.6 putative exported protein compare
Pf1N1B4_2096 +0.9 1.7 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_3830 +0.9 2.4 CrfX protein compare
Pf1N1B4_3846 +0.9 4.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf1N1B4_4154 +0.9 1.7 Transcriptional regulator, AraC family compare
Pf1N1B4_5706 +0.9 1.6 Fumarylacetoacetate hydrolase family protein compare
Pf1N1B4_3331 +0.9 1.4 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_4896 +0.9 3.7 N-ethylmaleimide reductase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms