Experiment set11IT050 for Paraburkholderia graminis OAS925

Compare to:

shik 5mM

200 most important genes:

  gene name fitness t score description  
ABIE53_003158 -6.9 -3.9 phosphoserine aminotransferase compare
ABIE53_004277 -5.0 -9.6 3-oxoadipate CoA-transferase alpha subunit compare
ABIE53_003735 -4.8 -4.6 hypothetical protein compare
ABIE53_001228 -4.8 -6.5 phosphoadenosine phosphosulfate reductase compare
ABIE53_004276 -4.8 -5.6 3-oxoadipate CoA-transferase beta subunit compare
ABIE53_000663 -4.7 -13.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_004921 -4.7 -4.5 protocatechuate 3,4-dioxygenase beta subunit compare
ABIE53_004075 -4.7 -6.4 shikimate dehydrogenase conserved
ABIE53_001227 -4.6 -3.2 uncharacterized protein (DUF934 family) compare
ABIE53_000768 -4.6 -12.6 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_000423 -4.6 -5.4 DnaK suppressor protein compare
ABIE53_000414 -4.6 -16.0 homoserine O-acetyltransferase compare
ABIE53_004803 -4.5 -4.4 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_000262 -4.5 -3.1 chromosome partitioning protein compare
ABIE53_003157 -4.4 -9.7 chorismate mutase/prephenate dehydratase compare
ABIE53_003536 -4.4 -7.8 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_000061 -4.3 -5.8 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_003434 -4.2 -9.5 heptosyltransferase-2 compare
ABIE53_005068 -4.1 -16.4 MHS family shikimate/dehydroshikimate transporter-like MFS transporter compare
ABIE53_004801 -4.0 -8.2 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_005782 -4.0 -2.3 hypothetical protein compare
ABIE53_001226 -4.0 -7.1 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_000029 -4.0 -16.6 IclR family pca regulon transcriptional regulator compare
ABIE53_005863 -4.0 -13.9 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_004804 -4.0 -7.1 3-isopropylmalate dehydrogenase compare
ABIE53_000046 -4.0 -12.4 putative MarR family transcription regulator compare
ABIE53_004077 -3.9 -12.1 4-hydroxyphenylpyruvate dioxygenase conserved
ABIE53_003734 -3.9 -11.8 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_003588 -3.9 -4.6 glutamate 5-kinase compare
ABIE53_000840 -3.9 -9.3 pyrroline-5-carboxylate reductase compare
ABIE53_002004 -3.8 -10.4 anti-sigma factor RsiW compare
ABIE53_001588 -3.8 -5.2 triosephosphate isomerase compare
ABIE53_003159 -3.8 -8.0 phosphoserine aminotransferase compare
ABIE53_004817 -3.8 -12.2 O-succinylhomoserine sulfhydrylase compare
ABIE53_002794 -3.8 -4.4 PAS domain S-box-containing protein compare
ABIE53_004275 -3.7 -5.0 3-carboxy-cis,cis-muconate cycloisomerase compare
ABIE53_004274 -3.6 -2.5 3-oxoadipate enol-lactonase compare
ABIE53_004920 -3.6 -3.5 protocatechuate 3,4-dioxygenase alpha subunit compare
ABIE53_002739 -3.5 -5.8 outer membrane protein assembly factor BamB compare
ABIE53_002077 -3.5 -3.3 phosphoserine phosphatase compare
ABIE53_001225 -3.4 -6.9 LysR family cys regulon transcriptional activator compare
ABIE53_003749 -3.4 -6.9 diaminopimelate decarboxylase compare
ABIE53_000063 -3.4 -2.4 adenosylhomocysteinase compare
ABIE53_004811 -3.4 -9.6 tryptophan synthase alpha chain compare
ABIE53_002857 -3.4 -14.8 phosphomethylpyrimidine synthase compare
ABIE53_002762 -3.3 -4.5 enolase compare
ABIE53_003162 -3.3 -5.9 OOP family OmpA-OmpF porin compare
ABIE53_002528 -3.3 -3.2 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_000667 -3.3 -9.0 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_001230 -3.3 -12.3 sulfate adenylyltransferase subunit 1 compare
ABIE53_003733 -3.2 -4.2 glutamate synthase domain-containing protein 3 compare
ABIE53_002703 -3.2 -1.6 aspartate kinase compare
ABIE53_001229 -3.2 -9.5 sulfate adenylyltransferase subunit 2 compare
ABIE53_002117 -3.1 -5.6 ATP-dependent Lon protease compare
ABIE53_004866 -3.1 -19.9 RNA polymerase primary sigma factor compare
ABIE53_003428 -3.1 -5.1 phosphoglycerate kinase compare
ABIE53_000674 -3.1 -8.9 cytochrome c oxidase subunit 1 compare
ABIE53_000883 -3.1 -1.8 colicin import membrane protein compare
ABIE53_001232 -3.0 -2.1 sirohydrochlorin cobaltochelatase compare
ABIE53_004810 -3.0 -11.9 site-specific DNA-methyltransferase (adenine-specific) compare
ABIE53_004630 -3.0 -1.8 hypothetical protein compare
ABIE53_000650 -3.0 -12.2 thiol-disulfide isomerase/thioredoxin compare
ABIE53_003640 -3.0 -11.6 anthranilate synthase component 1 compare
ABIE53_004073 -3.0 -12.3 AcrR family transcriptional regulator compare
ABIE53_000683 -3.0 -11.8 protoheme IX farnesyltransferase compare
ABIE53_001770 -2.8 -4.5 arginine N-succinyltransferase compare
ABIE53_004457 -2.8 -2.6 hypothetical protein compare
ABIE53_003565 -2.7 -5.7 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000830 -2.7 -3.8 preprotein translocase subunit YajC compare
ABIE53_000682 -2.7 -12.5 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_003160 -2.6 -11.7 hypothetical protein compare
ABIE53_000678 -2.6 -8.9 cytochrome c oxidase subunit 3 compare
ABIE53_000649 -2.6 -4.2 peroxiredoxin compare
ABIE53_003146 -2.6 -6.1 ADP-L-glycero-D-manno-heptose 6-epimerase compare
ABIE53_001420 -2.5 -5.6 cytochrome c553 compare
ABIE53_003531 -2.5 -2.4 Fur family ferric uptake transcriptional regulator compare
ABIE53_003674 -2.5 -5.2 AcrR family transcriptional regulator compare
ABIE53_003426 -2.5 -2.9 fructose-bisphosphate aldolase class II compare
ABIE53_000045 -2.4 -7.4 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_004227 -2.3 -7.3 signal transduction histidine kinase compare
ABIE53_003877 -2.2 -11.4 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_003757 -2.2 -8.4 thiol:disulfide interchange protein DsbD compare
ABIE53_000614 -2.2 -5.1 rubrerythrin compare
ABIE53_006508 -2.2 -4.5 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_003186 -2.2 -8.4 disulfide bond formation protein DsbB compare
ABIE53_002138 -2.1 -8.4 glucose-6-phosphate isomerase compare
ABIE53_003298 -2.1 -7.0 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_002116 -2.1 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_005020 -2.1 -11.7 AAHS family 4-hydroxybenzoate transporter-like MFS transporter compare
ABIE53_003535 -2.0 -10.6 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_003638 -2.0 -4.4 ribulose-phosphate 3-epimerase compare
ABIE53_000403 -2.0 -4.0 rod shape-determining protein MreD compare
ABIE53_003494 -2.0 -3.2 Holliday junction DNA helicase RuvA compare
ABIE53_001644 -2.0 -7.3 aromatic-amino-acid transaminase compare
ABIE53_003495 -2.0 -3.7 Holliday junction DNA helicase RuvB compare
ABIE53_000666 -2.0 -3.4 preprotein translocase subunit SecB compare
ABIE53_001994 -1.9 -8.6 LysR family cys regulon transcriptional activator compare
ABIE53_005556 -1.9 -3.0 two-component system response regulator TctD compare
ABIE53_004646 -1.9 -13.0 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
ABIE53_000884 -1.9 -5.4 biopolymer transport protein TolR compare
ABIE53_002388 -1.9 -2.1 5-hydroxyisourate hydrolase compare
ABIE53_002335 -1.9 -9.0 LacI family kdg operon repressor compare
ABIE53_001421 -1.9 -2.4 cytochrome c553 compare
ABIE53_000153 -1.8 -11.7 O-antigen ligase compare
ABIE53_003541 -1.8 -9.1 RNAse (barnase) inhibitor barstar compare
ABIE53_000598 -1.8 -5.8 thiol:disulfide interchange protein DsbA compare
ABIE53_000875 -1.7 -6.6 tRNA dimethylallyltransferase compare
ABIE53_000282 -1.7 -8.6 two-component system OmpR family response regulator compare
ABIE53_005380 -1.7 -1.9 DNA-binding transcriptional LysR family regulator compare
ABIE53_000843 -1.7 -2.7 glycolate oxidase FAD binding subunit compare
ABIE53_000006 -1.7 -3.8 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABIE53_004923 -1.7 -7.4 4-hydroxyphenylpyruvate dioxygenase compare
ABIE53_002424 -1.6 -7.6 anti-sigma factor RsiW compare
ABIE53_004035 -1.6 -2.1 putative O-methyltransferase YrrM compare
ABIE53_003391 -1.6 -5.1 DNA-binding transcriptional regulator LsrR (DeoR family) compare
ABIE53_005070 -1.5 -6.0 DNA-binding GntR family transcriptional regulator compare
ABIE53_001140 -1.5 -2.6 dTDP-4-dehydrorhamnose reductase compare
ABIE53_004076 -1.5 -2.8 3-dehydroquinate dehydratase-2 compare
ABIE53_004007 -1.5 -1.7 hypothetical protein compare
ABIE53_000798 -1.5 -4.2 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_003287 -1.5 -7.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
ABIE53_004482 -1.5 -1.6 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_005821 -1.5 -1.3 DNA-binding MurR/RpiR family transcriptional regulator compare
ABIE53_003261 -1.5 -7.7 undecaprenyl-diphosphatase compare
ABIE53_001575 -1.5 -2.4 acetolactate synthase-1/3 small subunit compare
ABIE53_005566 -1.5 -5.0 FMN reductase compare
ABIE53_002726 -1.5 -5.7 hypothetical protein compare
ABIE53_004689 -1.5 -8.3 DNA-binding GntR family transcriptional regulator compare
ABIE53_000885 -1.5 -6.0 biopolymer transport protein TolQ compare
ABIE53_003571 -1.4 -1.5 thiol peroxidase compare
ABIE53_002208 -1.4 -1.4 methyl-accepting chemotaxis protein compare
ABIE53_002101 -1.4 -6.5 two-component system phosphate regulon response regulator OmpR compare
ABIE53_006167 -1.4 -1.8 hyperosmotically inducible protein compare
ABIE53_005451 -1.4 -2.6 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_006282 -1.4 -2.6 DNA-binding HxlR family transcriptional regulator compare
ABIE53_005752 -1.4 -5.5 DNA-binding PadR family transcriptional regulator compare
ABIE53_003017 -1.4 -6.1 trehalose 6-phosphate phosphatase compare
ABIE53_002729 -1.4 -6.4 KUP system potassium uptake protein compare
ABIE53_004648 -1.4 -3.9 squalene synthase HpnD compare
ABIE53_004774 -1.4 -5.4 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_003059 -1.4 -3.5 ribonuclease E compare
ABIE53_001383 -1.4 -4.3 DNA (cytosine-5)-methyltransferase 1 compare
ABIE53_004858 -1.4 -4.0 farnesyl diphosphate synthase compare
ABIE53_002862 -1.4 -6.7 outer membrane protein assembly factor BamC compare
ABIE53_002735 -1.4 -5.7 membrane protease subunit HflK compare
ABIE53_003430 -1.4 -8.9 putative branched-subunit amino acid permease compare
ABIE53_002821 -1.3 -9.3 diguanylate cyclase (GGDEF)-like protein/PAS domain S-box-containing protein compare
ABIE53_001757 -1.3 -1.9 ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase compare
ABIE53_001572 -1.3 -3.1 hypothetical protein compare
ABIE53_006533 -1.3 -2.3 octopine/nopaline transport system ATP-binding protein compare
ABIE53_001989 -1.3 -3.2 repressor LexA compare
ABIE53_006137 -1.3 -2.6 membrane dipeptidase compare
ABIE53_005529 -1.3 -3.5 putative transcriptional regulator YheO compare
ABIE53_003574 -1.3 -5.2 hypothetical protein compare
ABIE53_000007 -1.3 -8.3 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE compare
ABIE53_004847 -1.3 -9.7 AMP nucleosidase compare
ABIE53_000003 -1.2 -10.0 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA compare
ABIE53_001814 -1.2 -3.2 ribosome-associated protein compare
ABIE53_001538 -1.2 -6.5 ribonuclease G compare
ABIE53_004252 -1.2 -2.5 putative pyridoxine 5'-phosphate oxidase superfamily flavin-nucleotide-binding protein compare
ABIE53_006307 -1.2 -2.8 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_000464 -1.2 -3.3 DNA-binding protein H-NS compare
ABIE53_001033 -1.2 -2.3 hypothetical protein compare
ABIE53_005310 -1.2 -3.2 uncharacterized protein YdeI (YjbR/CyaY-like superfamily) compare
ABIE53_001544 -1.2 -2.1 coproporphyrinogen III oxidase compare
ABIE53_004325 -1.2 -1.8 hypothetical protein compare
ABIE53_005142 -1.2 -0.9 acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase compare
ABIE53_003331 -1.2 -7.0 GntR family transcriptional regulator compare
ABIE53_004245 -1.2 -1.7 FMN-dependent NADH-azoreductase compare
ABIE53_003361 -1.2 -5.1 integrase/recombinase XerD compare
ABIE53_000413 -1.2 -4.6 methionine biosynthesis protein MetW compare
ABIE53_003085 -1.2 -2.8 acyl-CoA hydrolase compare
ABIE53_004068 -1.2 -2.3 putative NBD/HSP70 family sugar kinase compare
ABIE53_001932 -1.2 -3.0 hypothetical protein compare
ABIE53_001571 -1.2 -5.1 putative Fe-S protein YdhL (DUF1289 family) compare
ABIE53_004852 -1.2 -7.3 DNA polymerase-1 compare
ABIE53_002734 -1.2 -4.5 membrane protease subunit HflC compare
ABIE53_000005 -1.1 -7.9 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC compare
ABIE53_002102 -1.1 -4.5 hypothetical protein compare
ABIE53_004619 -1.1 -1.6 mannose-6-phosphate isomerase-like protein (cupin superfamily) compare
ABIE53_003460 -1.1 -5.5 mono/diheme cytochrome c family protein compare
ABIE53_003752 -1.1 -1.0 cytochrome c-type biogenesis protein CcsB compare
ABIE53_002242 -1.1 -2.4 hypothetical protein compare
ABIE53_002105 -1.1 -1.7 hypothetical protein compare
ABIE53_005351 -1.1 -1.3 nitrate reductase delta subunit compare
ABIE53_003669 -1.1 -2.1 CspA family cold shock protein compare
ABIE53_001598 -1.1 -1.1 NADH-quinone oxidoreductase subunit I compare
ABIE53_000681 -1.1 -7.7 cytochrome oxidase Cu insertion factor (SCO1/SenC/PrrC family) compare
ABIE53_003431 -1.1 -4.4 putative branched-subunit amino acid permease compare
ABIE53_003390 -1.1 -3.2 xylulokinase compare
ABIE53_003374 -1.1 -7.1 cyclopropane-fatty-acyl-phospholipid synthase compare
ABIE53_003288 -1.1 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA compare
ABIE53_004233 -1.1 -1.3 PII-like signaling protein compare
ABIE53_002067 -1.1 -6.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE53_001162 -1.1 -5.1 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
ABIE53_001537 -1.1 -6.0 DNA-binding GntR family transcriptional regulator compare
ABIE53_000680 -1.1 -5.5 surfeit locus 1 family protein compare
ABIE53_003210 -1.1 -1.5 acyl carrier protein compare
ABIE53_004160 -1.1 -8.6 putative porin compare
ABIE53_003940 -1.1 -1.7 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Shikimic Acid in Paraburkholderia graminis OAS925

For carbon source Shikimic Acid across organisms