Experiment set11IT048 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 1mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_267 -5.3 -2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_5224 -5.2 -2.7 tRNA-Arg-CCT compare
Pf1N1B4_5666 -5.2 -3.1 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1408 -5.0 -4.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_3785 -5.0 -1.8 FOG: Ankyrin repeat compare
Pf1N1B4_3965 -4.9 -1.5 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_5113 -4.7 -5.8 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_2177 -4.6 -1.0 FIG00953342: hypothetical protein compare
Pf1N1B4_2880 -4.5 -13.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2208 -4.5 -5.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_5115 -4.5 -4.4 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_6 -4.5 -3.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_275 -4.4 -2.3 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_4040 -4.4 -2.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_769 -4.4 -6.7 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1624 -4.4 -8.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2272 -4.2 -2.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1627 -4.2 -5.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_742 -4.2 -6.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_4029 -4.2 -2.9 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3168 -4.2 -3.8 AmpG permease compare
Pf1N1B4_3328 -4.1 -2.0 Rhodanese-like domain protein compare
Pf1N1B4_1315 -4.1 -10.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_5864 -4.1 -2.3 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_2112 -4.0 -17.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1434 -4.0 -9.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_15 -4.0 -3.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2338 -4.0 -7.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2547 -4.0 -2.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2384 -4.0 -11.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1534 -3.9 -21.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4582 -3.9 -2.7 hypothetical protein compare
Pf1N1B4_4038 -3.9 -2.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_5838 -3.9 -2.7 FIG00956589: hypothetical protein compare
Pf1N1B4_2352 -3.8 -3.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_5665 -3.8 -5.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2303 -3.8 -16.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1191 -3.8 -2.0 hypothetical protein compare
Pf1N1B4_731 -3.8 -2.0 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_1492 -3.8 -1.2 FIG00959437: hypothetical protein compare
Pf1N1B4_3595 -3.8 -2.2 Flagellin protein FlaG compare
Pf1N1B4_1611 -3.8 -5.4 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2453 -3.8 -1.9 hypothetical protein compare
Pf1N1B4_1626 -3.7 -7.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1870 -3.7 -2.7 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2458 -3.7 -2.3 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_4041 -3.7 -4.2 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_1533 -3.6 -9.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3506 -3.6 -7.8 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1565 -3.6 -3.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2879 -3.6 -5.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2486 -3.6 -1.9 hypothetical protein compare
Pf1N1B4_2282 -3.6 -10.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4042 -3.6 -7.0 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_27 -3.6 -5.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_1668 -3.5 -5.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2854 -3.5 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_350 -3.5 -9.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2009 -3.5 -5.3 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_419 -3.5 -2.1 Transcriptional regulator, TetR family compare
Pf1N1B4_2885 -3.5 -6.6 Paraquat-inducible protein A compare
Pf1N1B4_1 -3.4 -2.5 Colicin V production protein compare
Pf1N1B4_1307 -3.4 -1.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1625 -3.4 -5.2 FIG00956267: hypothetical protein compare
Pf1N1B4_2893 -3.4 -8.7 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_600 -3.4 -6.4 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_2011 -3.3 -10.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5302 -3.3 -4.0 hypothetical protein compare
Pf1N1B4_847 -3.3 -9.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3078 -3.2 -2.6 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_2493 -3.2 -3.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2891 -3.2 -4.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_12 -3.2 -6.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1617 -3.2 -7.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5112 -3.2 -3.0 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_4699 -3.2 -2.7 Multidrug translocase MdfA compare
Pf1N1B4_2488 -3.1 -3.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2545 -3.1 -12.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2039 -3.1 -2.5 hypothetical protein compare
Pf1N1B4_337 -3.1 -5.9 O-antigen export system permease protein RfbD compare
Pf1N1B4_2227 -3.1 -2.6 FIG019278: hypothetical protein compare
Pf1N1B4_1614 -3.1 -2.1 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_1872 -3.1 -8.1 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_3081 -3.0 -19.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_762 -3.0 -7.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_448 -3.0 -1.6 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_2850 -3.0 -8.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_3451 -3.0 -4.5 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_3501 -2.9 -5.4 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_5111 -2.9 -4.9 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf1N1B4_4208 -2.9 -3.1 organophosphate pesticide hydrolase compare
Pf1N1B4_4156 -2.9 -2.2 putative secreted protein compare
Pf1N1B4_5116 -2.9 -4.9 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
Pf1N1B4_3665 -2.9 -3.9 Transcriptional regulator, TetR family compare
Pf1N1B4_58 -2.8 -6.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2377 -2.8 -5.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2548 -2.8 -6.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_3751 -2.8 -1.7 FIG00953060: hypothetical protein compare
Pf1N1B4_1234 -2.8 -3.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3697 -2.8 -6.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1831 -2.7 -10.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_4745 -2.7 -1.5 Transcriptional regulator, LysR family compare
Pf1N1B4_3518 -2.7 -3.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3153 -2.7 -2.3 hypothetical protein compare
Pf1N1B4_4544 -2.7 -2.1 Uncharacterized protein ImpA compare
Pf1N1B4_5105 -2.7 -2.7 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_336 -2.7 -13.3 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_5682 -2.7 -2.5 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_2858 -2.7 -10.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2478 -2.7 -8.6 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_6041 -2.6 -2.1 Carbon storage regulator compare
Pf1N1B4_1024 -2.6 -6.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_4039 -2.6 -5.9 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4870 -2.6 -2.4 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_3826 -2.6 -8.3 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf1N1B4_2010 -2.6 -5.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2526 -2.5 -13.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_3817 -2.5 -4.0 FIG008443: hypothetical protein compare
Pf1N1B4_327 -2.5 -2.2 hypothetical protein compare
Pf1N1B4_2939 -2.5 -5.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_4516 -2.5 -2.6 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_4065 -2.5 -5.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4826 -2.5 -1.9 glutamine synthetase family protein compare
Pf1N1B4_2280 -2.5 -8.5 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2026 -2.5 -3.4 Transcriptional regulator compare
Pf1N1B4_3833 -2.5 -9.4 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1057 -2.4 -2.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4055 -2.4 -8.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_3980 -2.4 -2.9 Transcriptional regulator, HxlR family compare
Pf1N1B4_4326 -2.4 -2.4 N-carbamoylputrescine amidase (3.5.1.53) compare
Pf1N1B4_1236 -2.4 -6.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1535 -2.4 -3.4 hypothetical protein compare
Pf1N1B4_5255 -2.4 -3.1 hypothetical protein compare
Pf1N1B4_538 -2.4 -2.4 hypothetical protein compare
Pf1N1B4_1067 -2.3 -2.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4028 -2.3 -3.4 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1311 -2.3 -4.1 Probable transmembrane protein compare
Pf1N1B4_974 -2.3 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_2549 -2.3 -5.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2878 -2.3 -8.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3907 -2.3 -2.4 FIG00953287: hypothetical protein compare
Pf1N1B4_1869 -2.3 -7.3 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_3627 -2.3 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_4897 -2.3 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_335 -2.2 -9.3 Glycosyltransferase compare
Pf1N1B4_2337 -2.2 -4.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2522 -2.2 -7.5 FIG002076: hypothetical protein compare
Pf1N1B4_777 -2.2 -7.4 Membrane protein glpM compare
Pf1N1B4_188 -2.2 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4950 -2.2 -3.4 formate dehydrogenase formation protein FdhE compare
Pf1N1B4_3855 -2.2 -3.0 Chromosome partition protein smc compare
Pf1N1B4_2047 -2.2 -5.0 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_2886 -2.2 -9.9 Paraquat-inducible protein B compare
Pf1N1B4_3742 -2.2 -1.5 Oxidoreductase, zinc-binding compare
Pf1N1B4_758 -2.2 -3.1 Bacterioferritin compare
Pf1N1B4_4317 -2.1 -1.7 DNA/RNA non-specific endonuclease compare
Pf1N1B4_5870 -2.1 -2.0 VgrG protein compare
Pf1N1B4_2609 -2.1 -8.9 Catalase (EC 1.11.1.6) compare
Pf1N1B4_3816 -2.1 -5.5 FIG139976: hypothetical protein compare
Pf1N1B4_2106 -2.1 -1.9 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_2491 -2.1 -3.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_1153 -2.1 -2.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_898 -2.1 -8.4 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_770 -2.1 -2.0 hypothetical protein compare
Pf1N1B4_5014 -2.1 -1.8 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_1566 -2.1 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1830 -2.1 -6.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_4614 -2.1 -5.0 Membrane alanine aminopeptidase N (EC 3.4.11.2) compare
Pf1N1B4_1480 -2.0 -3.9 Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) compare
Pf1N1B4_5311 -2.0 -1.7 hypothetical protein compare
Pf1N1B4_5329 -2.0 -3.5 hypothetical protein compare
Pf1N1B4_5278 -2.0 -1.8 hypothetical protein compare
Pf1N1B4_6024 -2.0 -2.6 FIG00953292: hypothetical protein compare
Pf1N1B4_614 -2.0 -3.0 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_4104 -2.0 -1.7 Probable transmembrane protein compare
Pf1N1B4_475 -2.0 -3.3 ABC-type multidrug transport system, permease component compare
Pf1N1B4_4993 -2.0 -2.8 Arabinose efflux permease compare
Pf1N1B4_3720 -1.9 -5.5 Long-chain fatty acid transport protein compare
Pf1N1B4_5759 -1.9 -3.4 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_4845 -1.9 -3.8 Xylulose kinase (EC 2.7.1.17) compare
Pf1N1B4_3387 -1.9 -7.8 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) compare
Pf1N1B4_5939 -1.9 -2.6 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_4849 -1.9 -1.4 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_2774 -1.9 -2.6 hypothetical protein compare
Pf1N1B4_1993 -1.9 -1.1 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4521 -1.9 -2.0 Probable transmembrane protein compare
Pf1N1B4_2489 -1.9 -2.3 Biotin synthesis protein BioH compare
Pf1N1B4_338 -1.9 -2.3 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_2884 -1.9 -4.3 Paraquat-inducible protein A compare
Pf1N1B4_715 -1.9 -5.2 Iron-regulated protein A precursor compare
Pf1N1B4_3443 -1.9 -2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_3825 -1.9 -2.8 FIG00959101: hypothetical protein compare
Pf1N1B4_2825 -1.8 -2.8 EF hand domain protein compare
Pf1N1B4_4027 -1.8 -1.3 hypothetical protein compare
Pf1N1B4_2668 -1.8 -6.2 DedA protein compare
Pf1N1B4_3466 -1.8 -2.0 FIG00955605: hypothetical protein compare
Pf1N1B4_4189 -1.8 -4.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1636 -1.8 -1.3 FIG00954739: hypothetical protein compare
Pf1N1B4_3775 -1.8 -1.1 FIG00956876: hypothetical protein compare
Pf1N1B4_709 -1.8 -3.1 FIG00953860: hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms