Experiment set11IT047 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 1mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_339 -5.8 -2.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1408 -5.5 -3.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_5224 -5.5 -2.6 tRNA-Arg-CCT compare
Pf1N1B4_2734 -5.4 -1.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_5666 -5.3 -3.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_5115 -5.2 -4.0 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_27 -4.9 -5.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_2880 -4.9 -13.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5665 -4.9 -6.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5113 -4.8 -5.7 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_175 -4.8 -1.9 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_6 -4.7 -3.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2106 -4.7 -3.8 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_15 -4.6 -2.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_4029 -4.5 -3.1 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_600 -4.5 -6.8 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_4446 -4.4 -2.3 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_5116 -4.4 -9.1 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
Pf1N1B4_1627 -4.4 -6.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2545 -4.4 -9.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1533 -4.3 -6.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1626 -4.2 -6.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4041 -4.2 -5.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4038 -4.2 -2.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1624 -4.1 -11.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2112 -4.0 -18.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1246 -4.0 -1.8 FIG00954047: hypothetical protein compare
Pf1N1B4_1668 -4.0 -6.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2884 -3.9 -5.4 Paraquat-inducible protein A compare
Pf1N1B4_350 -3.9 -9.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2208 -3.8 -8.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_2009 -3.8 -5.2 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2547 -3.8 -4.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2303 -3.8 -15.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3764 -3.8 -3.5 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_1534 -3.7 -19.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2489 -3.7 -4.4 Biotin synthesis protein BioH compare
Pf1N1B4_5111 -3.7 -6.3 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf1N1B4_4386 -3.7 -4.0 Inositol transport system sugar-binding protein compare
Pf1N1B4_419 -3.7 -2.1 Transcriptional regulator, TetR family compare
Pf1N1B4_3273 -3.6 -2.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_742 -3.6 -9.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2282 -3.6 -11.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1872 -3.6 -8.0 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_4042 -3.6 -6.4 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_3222 -3.6 -1.9 Ferredoxin compare
Pf1N1B4_5829 -3.5 -2.0 FIG005107: hypothetical protein compare
Pf1N1B4_688 -3.5 -2.5 FIG00955483: hypothetical protein compare
Pf1N1B4_1565 -3.5 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_58 -3.4 -8.2 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3506 -3.4 -8.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_769 -3.4 -8.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2337 -3.3 -6.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1869 -3.3 -8.8 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_2005 -3.3 -2.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2893 -3.3 -8.4 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_2280 -3.3 -10.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5871 -3.3 -3.3 FIG00963848: hypothetical protein compare
Pf1N1B4_2360 -3.2 -2.2 hypothetical protein compare
Pf1N1B4_2858 -3.2 -12.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3785 -3.2 -2.1 FOG: Ankyrin repeat compare
Pf1N1B4_3153 -3.2 -2.2 hypothetical protein compare
Pf1N1B4_4028 -3.2 -4.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_336 -3.2 -17.1 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_1492 -3.2 -1.1 FIG00959437: hypothetical protein compare
Pf1N1B4_5833 -3.2 -2.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_5357 -3.1 -1.7 hypothetical protein compare
Pf1N1B4_4040 -3.1 -3.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1870 -3.1 -2.9 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2284 -3.1 -5.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2486 -3.1 -2.0 hypothetical protein compare
Pf1N1B4_1781 -3.1 -2.2 hypothetical protein compare
Pf1N1B4_5393 -3.0 -2.8 hypothetical protein compare
Pf1N1B4_1782 -3.0 -2.2 hypothetical protein compare
Pf1N1B4_1 -3.0 -2.6 Colicin V production protein compare
Pf1N1B4_1067 -3.0 -4.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2010 -3.0 -5.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2352 -3.0 -7.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_847 -2.9 -8.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_407 -2.9 -1.6 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_2609 -2.9 -13.5 Catalase (EC 1.11.1.6) compare
Pf1N1B4_2939 -2.9 -6.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2048 -2.9 -2.2 hypothetical protein compare
Pf1N1B4_1434 -2.9 -5.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3468 -2.9 -1.9 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2105 -2.9 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1831 -2.9 -10.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_3078 -2.9 -2.5 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_2384 -2.9 -9.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2488 -2.9 -6.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2879 -2.9 -8.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2377 -2.8 -7.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2526 -2.8 -14.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1315 -2.8 -6.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_875 -2.8 -2.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1613 -2.7 -2.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_2493 -2.7 -3.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2878 -2.7 -8.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1057 -2.7 -3.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_602 -2.7 -3.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_1963 -2.6 -4.6 O-antigen export system permease protein RfbD compare
Pf1N1B4_2338 -2.6 -7.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_717 -2.6 -7.6 Iron-regulated protein A precursor compare
Pf1N1B4_4320 -2.6 -3.6 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_2272 -2.6 -4.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_614 -2.6 -4.0 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_3363 -2.5 -6.1 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase compare
Pf1N1B4_3081 -2.5 -15.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_337 -2.5 -4.2 O-antigen export system permease protein RfbD compare
Pf1N1B4_4065 -2.5 -5.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4039 -2.5 -5.7 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2668 -2.5 -8.5 DedA protein compare
Pf1N1B4_2850 -2.5 -8.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1617 -2.4 -8.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_74 -2.4 -2.1 hypothetical protein compare
Pf1N1B4_3833 -2.4 -8.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3713 -2.4 -2.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_188 -2.4 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1612 -2.4 -2.4 FIG00955429: hypothetical protein compare
Pf1N1B4_2854 -2.4 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_126 -2.4 -2.2 Pirin compare
Pf1N1B4_6037 -2.4 -2.7 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_4030 -2.3 -2.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1830 -2.3 -8.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5957 -2.3 -2.3 Arsenical resistance operon repressor compare
Pf1N1B4_2548 -2.3 -4.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_4849 -2.3 -1.7 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_476 -2.3 -3.3 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_777 -2.3 -6.7 Membrane protein glpM compare
Pf1N1B4_751 -2.3 -1.6 hypothetical protein compare
Pf1N1B4_501 -2.3 -2.3 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_335 -2.3 -8.1 Glycosyltransferase compare
Pf1N1B4_846 -2.3 -1.4 hypothetical protein compare
Pf1N1B4_2011 -2.3 -6.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_340 -2.3 -6.6 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_3501 -2.3 -4.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_1610 -2.3 -3.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1236 -2.2 -6.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_12 -2.2 -4.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2060 -2.2 -2.4 hypothetical protein compare
Pf1N1B4_5619 -2.2 -2.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_1060 -2.2 -1.7 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_1024 -2.2 -4.5 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_2885 -2.2 -4.8 Paraquat-inducible protein A compare
Pf1N1B4_876 -2.2 -2.9 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_4055 -2.2 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_2886 -2.2 -11.1 Paraquat-inducible protein B compare
Pf1N1B4_2491 -2.2 -2.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2173 -2.1 -2.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_1142 -2.1 -6.0 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB compare
Pf1N1B4_115 -2.1 -2.1 Membrane protein mosC compare
Pf1N1B4_2483 -2.1 -3.5 DNA-binding domain of ModE / Molybdate-binding domain of ModE compare
Pf1N1B4_324 -2.1 -1.9 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_5668 -2.1 -2.6 Peptidase, U7 family compare
Pf1N1B4_1625 -2.1 -2.3 FIG00956267: hypothetical protein compare
Pf1N1B4_230 -2.1 -1.4 FIG00953472: hypothetical protein compare
Pf1N1B4_1615 -2.1 -3.6 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_1611 -2.1 -3.4 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3826 -2.1 -6.4 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf1N1B4_3518 -2.1 -2.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3722 -2.1 -2.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3720 -2.1 -6.4 Long-chain fatty acid transport protein compare
Pf1N1B4_4699 -2.0 -1.4 Multidrug translocase MdfA compare
Pf1N1B4_3697 -2.0 -3.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1888 -2.0 -3.5 Glutamate-aspartate carrier protein compare
Pf1N1B4_1461 -2.0 -2.9 Protein fixF compare
Pf1N1B4_4715 -2.0 -1.3 Transcriptional regulator compare
Pf1N1B4_762 -2.0 -4.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2674 -1.9 -1.6 hypothetical protein compare
Pf1N1B4_898 -1.9 -6.1 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_34 -1.9 -1.5 Xanthine permease compare
Pf1N1B4_1581 -1.9 -2.6 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_349 -1.9 -3.6 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_1906 -1.9 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4001 -1.9 -2.1 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_165 -1.9 -2.5 FIG00638667: hypothetical protein compare
Pf1N1B4_1535 -1.9 -2.0 hypothetical protein compare
Pf1N1B4_2521 -1.9 -10.3 FIG004684: SpoVR-like protein compare
Pf1N1B4_4189 -1.9 -4.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_4613 -1.9 -2.7 FIG00953934: hypothetical protein compare
Pf1N1B4_2937 -1.9 -3.5 FIG00953775: hypothetical protein compare
Pf1N1B4_5147 -1.9 -2.5 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
Pf1N1B4_2794 -1.9 -2.1 FIG00953595: hypothetical protein compare
Pf1N1B4_4729 -1.8 -2.0 Hemolysin-type calcium-binding region compare
Pf1N1B4_5650 -1.8 -4.3 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf1N1B4_2026 -1.8 -3.3 Transcriptional regulator compare
Pf1N1B4_1235 -1.8 -5.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2487 -1.8 -6.2 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1730 -1.8 -2.7 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_5812 -1.8 -2.1 FIG00955248: hypothetical protein compare
Pf1N1B4_1780 -1.8 -1.7 FIG00961586: hypothetical protein compare
Pf1N1B4_5690 -1.8 -2.0 Putative TEGT family carrier/transport protein compare
Pf1N1B4_2549 -1.8 -4.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_3812 -1.8 -8.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_262 -1.8 -10.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_1566 -1.8 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_718 -1.8 -5.4 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_5014 -1.8 -1.7 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_372 -1.8 -1.9 UDP-galactose-lipid carrier transferase (EC 2.-.-.-) compare
Pf1N1B4_2870 -1.8 -1.6 Regulator of competence-specific genes compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms