Experiment set11IT047 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Glycine betaine (N); with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS20565 -3.9 -18.8 3-isopropylmalate dehydrogenase compare
PFLU_RS28535 -3.8 -20.0 dihydroxy-acid dehydratase compare
PFLU_RS01625 -3.7 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS00175 -3.5 -12.1 tryptophan synthase subunit alpha compare
PFLU_RS25640 -3.5 -16.2 ketol-acid reductoisomerase compare
PFLU_RS28390 -3.4 -13.0 methionine biosynthesis protein MetW compare
PFLU_RS20510 -3.4 -16.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS27365 -3.3 -10.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28385 -3.3 -16.2 homoserine O-acetyltransferase compare
PFLU_RS20575 -3.3 -6.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02045 -3.3 -23.5 glutamate synthase large subunit compare
PFLU_RS20580 -3.2 -15.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27370 -3.2 -15.1 anthranilate phosphoribosyltransferase compare
PFLU_RS00180 -3.2 -9.8 tryptophan synthase subunit beta compare
PFLU_RS25360 -3.2 -9.3 glutamate 5-kinase compare
PFLU_RS01610 -3.1 -14.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS24765 -3.0 -19.3 2-isopropylmalate synthase compare
PFLU_RS02050 -3.0 -17.9 NAD(P)-binding protein compare
PFLU_RS04470 -2.9 -14.4 histidinol dehydrogenase compare
PFLU_RS01620 -2.9 -11.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20540 -2.9 -11.7 phosphoribosylanthranilate isomerase compare
PFLU_RS01685 -2.8 -4.7 nitrogen regulation protein NR(I) compare
PFLU_RS20515 -2.7 -5.7 amidophosphoribosyltransferase compare
PFLU_RS01605 -2.7 -9.2 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS12975 -2.7 -6.4 DUF934 domain-containing protein compare
PFLU_RS04465 -2.7 -9.1 ATP phosphoribosyltransferase compare
PFLU_RS28165 -2.7 -13.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS22595 -2.7 -4.0 OmpA family protein compare
PFLU_RS05965 -2.6 -3.0 hypothetical protein compare
PFLU_RS06265 -2.6 -18.6 [protein-PII] uridylyltransferase compare
PFLU_RS02590 -2.6 -10.3 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS09055 -2.5 -5.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01900 -2.5 -9.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01690 -2.4 -7.3 nitrogen regulation protein NR(II) compare
PFLU_RS13540 -2.4 -7.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25585 -2.3 -4.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS18505 -2.2 -11.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS30030 -2.2 -1.9 membrane protein compare
PFLU_RS08655 -2.1 -4.0 heme ABC transporter permease compare
PFLU_RS12980 -2.1 -9.9 nitrite/sulfite reductase compare
PFLU_RS22740 -2.0 -5.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS19170 -2.0 -5.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS14550 -2.0 -7.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS02455 -2.0 -3.5 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS24555 -1.9 -5.4 thioredoxin fold domain-containing protein compare
PFLU_RS25595 -1.9 -3.2 exodeoxyribonuclease V subunit gamma compare
PFLU_RS08670 -1.9 -5.6 heme lyase CcmF/NrfE family subunit compare
PFLU_RS01895 -1.9 -5.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS15410 -1.8 -3.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS28655 -1.8 -11.6 HAD family hydrolase compare
PFLU_RS21495 -1.8 -3.9 TlpA family protein disulfide reductase compare
PFLU_RS27815 -1.7 -6.5 sarcosine oxidase subunit delta compare
PFLU_RS27805 -1.7 -3.1 sarcosine oxidase subunit gamma family protein compare
PFLU_RS00415 -1.7 -2.5 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS06055 -1.6 -1.9 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS02275 -1.6 -3.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS08650 -1.6 -2.4 heme exporter protein CcmB compare
PFLU_RS27895 -1.6 -7.3 membrane dipeptidase compare
PFLU_RS02365 -1.6 -9.2 glycosyltransferase compare
PFLU_RS25760 -1.5 -9.4 glucose-6-phosphate isomerase compare
PFLU_RS08675 -1.5 -3.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS22105 -1.5 -4.2 cysteine synthase CysM compare
PFLU_RS27870 -1.5 -10.2 electron transfer flavoprotein subunit beta compare
PFLU_RS05020 -1.5 -2.0 DUF1120 domain-containing protein compare
PFLU_RS12260 -1.5 -2.2 hypothetical protein compare
PFLU_RS24510 -1.5 -8.7 virulence factor family protein compare
PFLU_RS27885 -1.5 -9.4 dimethylglycine demethylation protein DgcA compare
PFLU_RS27820 -1.5 -8.7 sarcosine oxidase subunit beta compare
PFLU_RS13750 -1.4 -2.2 hypothetical protein compare
PFLU_RS07725 -1.4 -3.8 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS07645 -1.3 -3.5 hypothetical protein compare
PFLU_RS27810 -1.3 -9.1 sarcosine oxidase subunit alpha compare
PFLU_RS31490 -1.3 -2.1 hypothetical protein compare
PFLU_RS08155 -1.3 -4.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS22190 -1.3 -1.9 hypothetical protein compare
PFLU_RS27880 -1.3 -5.6 dimethylglycine demethylation protein DgcB compare
PFLU_RS18530 -1.2 -3.4 DNA translocase FtsK compare
PFLU_RS23070 -1.2 -1.2 50S ribosomal protein L32 compare
PFLU_RS27875 -1.2 -6.5 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS25715 -1.2 -6.5 RNA polymerase-binding protein DksA compare
PFLU_RS29065 -1.2 -1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS25645 -1.2 -2.2 acetolactate synthase small subunit compare
PFLU_RS30215 -1.2 -5.4 KTSC domain-containing protein compare
PFLU_RS13010 -1.2 -3.6 Fe-S biogenesis protein NfuA compare
PFLU_RS09305 -1.2 -7.8 hypothetical protein compare
PFLU_RS04070 -1.2 -3.4 peptide chain release factor 3 compare
PFLU_RS27475 -1.2 -6.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS19165 -1.1 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS23065 -1.1 -6.3 phosphate acyltransferase PlsX compare
PFLU_RS27825 -1.1 -5.8 serine hydroxymethyltransferase compare
PFLU_RS02370 -1.1 -6.3 glycosyltransferase compare
PFLU_RS03240 -1.1 -7.5 copper-translocating P-type ATPase compare
PFLU_RS24505 -1.1 -9.6 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF compare
PFLU_RS23380 -1.1 -2.5 HAD-IB family hydrolase compare
PFLU_RS14805 -1.1 -1.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS18655 -1.1 -2.1 NADH-quinone oxidoreductase subunit J compare
PFLU_RS05630 -1.1 -1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS29880 -1.0 -6.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS21425 -1.0 -2.8 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS12175 -1.0 -1.7 methyl-accepting chemotaxis protein compare
PFLU_RS05750 -1.0 -1.4 methionine--tRNA ligase compare
PFLU_RS08665 -1.0 -2.4 cytochrome c maturation protein CcmE compare
PFLU_RS28695 -0.9 -4.0 phosphoglycerate dehydrogenase compare
PFLU_RS27890 -0.9 -5.6 hypothetical protein compare
PFLU_RS05250 -0.9 -3.1 elongation factor 4 compare
PFLU_RS07255 -0.9 -3.1 sulfurtransferase TusA family protein compare
PFLU_RS08135 -0.9 -3.6 glycosyltransferase compare
PFLU_RS24330 -0.9 -5.0 phosphogluconate dehydratase compare
PFLU_RS02490 -0.9 -6.3 phosphoserine phosphatase SerB compare
PFLU_RS12725 -0.9 -2.2 GNAT family N-acetyltransferase compare
PFLU_RS30510 -0.9 -3.5 glycosyltransferase family 4 protein compare
PFLU_RS29875 -0.9 -6.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS31290 -0.9 -1.5 EamA family transporter compare
PFLU_RS31710 -0.8 -2.3 hypothetical protein compare
PFLU_RS23045 -0.8 -4.2 beta-ketoacyl-ACP synthase II compare
PFLU_RS25210 -0.8 -3.4 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS03865 -0.8 -2.9 outer membrane protein assembly factor BamD compare
PFLU_RS27380 -0.8 -5.7 anthranilate synthase component I compare
PFLU_RS24125 -0.8 -3.4 cold-shock protein compare
PFLU_RS16515 -0.8 -3.0 hypothetical protein compare
PFLU_RS14820 -0.8 -3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS11930 -0.8 -1.8 biopolymer transporter ExbD compare
PFLU_RS01890 -0.8 -2.4 twin-arginine translocase TatA/TatE family subunit compare
PFLU_RS28325 -0.8 -3.6 energy transducer TonB compare
PFLU_RS02565 -0.8 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS23310 -0.8 -4.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS03665 -0.8 -3.3 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS06555 -0.8 -4.6 OmpA family protein compare
PFLU_RS08160 -0.8 -4.4 sugar transferase compare
PFLU_RS08190 -0.8 -6.3 polysaccharide biosynthesis protein compare
PFLU_RS31425 -0.8 -1.5 hypothetical protein compare
PFLU_RS18700 -0.8 -1.6 hypothetical protein compare
PFLU_RS28080 -0.8 -1.6 hypothetical protein compare
PFLU_RS04330 -0.8 -6.2 TIGR02099 family protein compare
PFLU_RS00065 -0.8 -4.2 lysophospholipid acyltransferase compare
PFLU_RS25205 -0.8 -3.2 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS07695 -0.8 -2.2 beta-N-acetylhexosaminidase compare
PFLU_RS03555 -0.8 -0.8 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS18675 -0.8 -2.7 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS30345 -0.7 -1.8 DUF2559 family protein compare
PFLU_RS19610 -0.7 -1.4 hypothetical protein compare
PFLU_RS27375 -0.7 -2.9 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS01585 -0.7 -3.8 oxidative damage protection protein compare
PFLU_RS31675 -0.7 -1.9 hypothetical protein compare
PFLU_RS03610 -0.7 -3.0 redox-regulated ATPase YchF compare
PFLU_RS25740 -0.7 -3.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS00395 -0.7 -5.6 DNA polymerase I compare
PFLU_RS28320 -0.7 -2.0 glutathione synthase compare
PFLU_RS22470 -0.7 -1.9 hypothetical protein compare
PFLU_RS18670 -0.7 -1.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS23885 -0.7 -1.9 transposase compare
PFLU_RS27865 -0.7 -5.1 glycine-betaine demethylase subunit GbcA compare
PFLU_RS25215 -0.7 -4.7 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS25200 -0.7 -3.8 protoheme IX farnesyltransferase compare
PFLU_RS21575 -0.7 -1.2 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS19585 -0.7 -2.9 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS17390 -0.7 -1.6 DUF4880 domain-containing protein compare
PFLU_RS23725 -0.7 -4.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS03075 -0.7 -0.9 translation initiation factor Sui1 compare
PFLU_RS02625 -0.7 -4.9 ribonuclease R compare
PFLU_RS31580 -0.7 -3.1 hypothetical protein compare
PFLU_RS22455 -0.7 -4.3 hypothetical protein compare
PFLU_RS28905 -0.7 -4.2 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS08505 -0.7 -2.8 protease HtpX compare
PFLU_RS14335 -0.7 -1.6 ABC transporter permease compare
PFLU_RS30590 -0.7 -1.1 hypothetical protein compare
PFLU_RS14300 -0.7 -1.2 response regulator transcription factor compare
PFLU_RS23390 -0.6 -1.0 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS24025 -0.6 -4.3 quinolinate synthase NadA compare
PFLU_RS08185 -0.6 -4.2 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS20970 -0.6 -1.3 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS04455 -0.6 -2.9 BolA family transcriptional regulator compare
PFLU_RS00310 -0.6 -1.0 twin transmembrane helix small protein compare
PFLU_RS02355 -0.6 -2.7 GNAT family N-acetyltransferase compare
PFLU_RS01615 -0.6 -2.5 DUF2164 domain-containing protein compare
PFLU_RS30790 -0.6 -1.9 hypothetical protein compare
PFLU_RS25220 -0.6 -3.5 ubiquinol oxidase subunit II compare
PFLU_RS24930 -0.6 -2.3 hypothetical protein compare
PFLU_RS18645 -0.6 -1.3 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS20690 -0.6 -2.5 hypothetical protein compare
PFLU_RS24015 -0.6 -1.5 cold-shock protein compare
PFLU_RS01960 -0.6 -1.2 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS18640 -0.6 -2.5 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS30165 -0.6 -3.1 ParA family protein compare
PFLU_RS08145 -0.6 -3.3 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS30525 -0.6 -3.8 SDR family oxidoreductase compare
PFLU_RS23220 -0.6 -1.5 tRNA-Arg compare
PFLU_RS01955 -0.6 -3.0 DUF971 domain-containing protein compare
PFLU_RS15810 -0.6 -1.7 hypothetical protein compare
PFLU_RS29885 -0.6 -3.0 LysR family transcriptional regulator compare
PFLU_RS25920 -0.6 -1.9 outer membrane protein assembly factor BamE compare
PFLU_RS08165 -0.6 -1.0 acyl carrier protein compare
PFLU_RS01095 -0.6 -1.5 ribbon-helix-helix protein, CopG family compare
PFLU_RS26735 -0.6 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS08125 -0.6 -1.8 integration host factor subunit beta compare
PFLU_RS10355 -0.6 -2.1 DeoR family transcriptional regulator compare
PFLU_RS27580 -0.6 -1.8 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS30530 -0.6 -3.4 acetyltransferase compare
PFLU_RS23445 -0.6 -1.3 DUF1003 domain-containing protein compare
PFLU_RS16200 -0.6 -2.4 4-hydroxyproline epimerase compare


Specific Phenotypes

For 2 genes in this experiment

For no stress control Sucrose in Pseudomonas fluorescens SBW25-INTG

For no stress control Sucrose across organisms