Experiment set11IT046 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrite 0.1mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5224 -5.8 -3.4 tRNA-Arg-CCT compare
Pf1N1B4_2757 -5.1 -3.5 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
Pf1N1B4_2005 -5.0 -2.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_5575 -4.9 -3.1 hypothetical protein compare
Pf1N1B4_2102 -4.8 -2.3 hypothetical protein compare
Pf1N1B4_2547 -4.7 -3.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_327 -4.6 -2.7 hypothetical protein compare
Pf1N1B4_4038 -4.5 -2.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_5925 -4.5 -10.7 hypothetical protein compare
Pf1N1B4_5278 -4.3 -2.7 hypothetical protein compare
Pf1N1B4_2486 -4.3 -2.5 hypothetical protein compare
Pf1N1B4_2380 -3.8 -11.3 Cytochrome B561 compare
Pf1N1B4_3518 -3.7 -4.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3729 -3.7 -3.2 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_5926 -3.7 -9.4 hypothetical protein compare
Pf1N1B4_2400 -3.5 -4.0 FIG00955006: hypothetical protein compare
Pf1N1B4_5924 -3.5 -8.0 hypothetical protein compare
Pf1N1B4_5666 -3.5 -3.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_5425 -3.3 -3.0 DNA-binding protein HU-beta compare
Pf1N1B4_2381 -3.2 -7.5 Protein yceI precursor compare
Pf1N1B4_1434 -3.1 -7.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1627 -3.0 -4.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_3498 -3.0 -2.7 FIG00953240: hypothetical protein compare
Pf1N1B4_2858 -3.0 -12.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_5927 -3.0 -15.9 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_2284 -2.9 -4.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_1533 -2.9 -9.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1534 -2.9 -15.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_742 -2.9 -8.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_4486 -2.9 -3.7 Outer membrane protein (porin) compare
Pf1N1B4_3153 -2.8 -2.9 hypothetical protein compare
Pf1N1B4_1626 -2.8 -7.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3812 -2.7 -7.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4110 -2.7 -3.3 hypothetical protein compare
Pf1N1B4_58 -2.7 -5.6 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_275 -2.7 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_12 -2.7 -6.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_4678 -2.6 -4.3 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_1408 -2.6 -3.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_4029 -2.6 -4.5 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_4412 -2.6 -2.1 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_4299 -2.6 -2.7 sensor histidine kinase compare
Pf1N1B4_5266 -2.5 -1.8 hypothetical protein compare
Pf1N1B4_2303 -2.5 -10.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_6 -2.5 -4.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2545 -2.5 -10.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_5619 -2.5 -2.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_3331 -2.5 -3.2 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_1831 -2.5 -9.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1619 -2.4 -10.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_399 -2.4 -1.8 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_1668 -2.4 -4.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_1679 -2.4 -2.3 Membrane-fusion protein compare
Pf1N1B4_1315 -2.4 -6.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2880 -2.4 -8.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5292 -2.3 -2.5 hypothetical protein compare
Pf1N1B4_3081 -2.3 -15.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_5146 -2.3 -2.7 Chromosome initiation inhibitor compare
Pf1N1B4_4729 -2.3 -1.5 Hemolysin-type calcium-binding region compare
Pf1N1B4_5043 -2.3 -2.0 hypothetical protein compare
Pf1N1B4_974 -2.3 -3.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4212 -2.2 -2.2 Gfa-like protein compare
Pf1N1B4_5091 -2.2 -3.0 hypothetical protein compare
Pf1N1B4_3468 -2.2 -1.9 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1770 -2.2 -3.0 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Pf1N1B4_3775 -2.2 -1.4 FIG00956876: hypothetical protein compare
Pf1N1B4_1636 -2.2 -1.4 FIG00954739: hypothetical protein compare
Pf1N1B4_847 -2.2 -6.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2048 -2.2 -1.4 hypothetical protein compare
Pf1N1B4_2850 -2.1 -7.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_756 -2.1 -2.2 hypothetical protein compare
Pf1N1B4_1716 -2.1 -2.6 FIG00953394: hypothetical protein compare
Pf1N1B4_1234 -2.1 -3.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2548 -2.1 -5.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1019 -2.1 -4.5 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Pf1N1B4_2502 -2.1 -3.3 Coenzyme PQQ synthesis protein B compare
Pf1N1B4_4419 -2.1 -2.1 Organosulfonate utilization protein SsuF compare
Pf1N1B4_2006 -2.1 -2.6 hypothetical protein compare
Pf1N1B4_3435 -2.1 -1.7 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_4041 -2.0 -3.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_1695 -2.0 -1.6 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_4477 -2.0 -2.2 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_2105 -2.0 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1024 -2.0 -4.3 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_1067 -2.0 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_5904 -2.0 -2.1 FIG00955320: hypothetical protein compare
Pf1N1B4_1307 -1.9 -2.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1830 -1.9 -6.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1792 -1.9 -2.3 Taurine transport ATP-binding protein TauB compare
Pf1N1B4_2886 -1.9 -9.0 Paraquat-inducible protein B compare
Pf1N1B4_2526 -1.9 -9.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4437 -1.9 -2.6 hypothetical protein compare
Pf1N1B4_3858 -1.9 -2.4 FIG00954563: hypothetical protein compare
Pf1N1B4_1403 -1.9 -6.0 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_606 -1.8 -1.6 Iron siderophore sensor protein compare
Pf1N1B4_3501 -1.8 -3.8 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_1611 -1.8 -2.9 Nitrogen regulation protein NR(I) compare
Pf1N1B4_5498 -1.8 -1.2 hypothetical protein compare
Pf1N1B4_1317 -1.8 -2.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_2734 -1.8 -1.2 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_2878 -1.8 -6.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3541 -1.8 -2.6 FIG027190: Putative transmembrane protein compare
Pf1N1B4_4765 -1.8 -1.8 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_5505 -1.8 -2.2 hypothetical protein compare
Pf1N1B4_763 -1.8 -3.7 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_1331 -1.8 -2.5 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_1584 -1.8 -1.4 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_978 -1.8 -5.0 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf1N1B4_2009 -1.7 -3.9 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_350 -1.7 -4.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1472 -1.7 -1.1 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_740 -1.7 -1.9 Leucyl-tRNA synthetase compare
Pf1N1B4_762 -1.7 -4.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_578 -1.7 -2.2 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_4822 -1.7 -1.4 Paraquat-inducible protein A compare
Pf1N1B4_5899 -1.7 -2.0 FIG00954746: hypothetical protein compare
Pf1N1B4_2937 -1.7 -2.6 FIG00953775: hypothetical protein compare
Pf1N1B4_3782 -1.7 -1.7 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_2085 -1.7 -2.1 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_5470 -1.7 -2.8 hypothetical protein compare
Pf1N1B4_5331 -1.7 -1.9 hypothetical protein compare
Pf1N1B4_2721 -1.7 -6.1 AMP nucleosidase (EC 3.2.2.4) compare
Pf1N1B4_4553 -1.7 -3.2 FIG00959354: hypothetical protein compare
Pf1N1B4_5817 -1.7 -1.7 Decarboxylase family protein compare
Pf1N1B4_3497 -1.7 -3.7 Heat shock protein compare
Pf1N1B4_2337 -1.7 -4.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1052 -1.7 -2.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_4397 -1.6 -1.7 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_3968 -1.6 -2.5 Spermidine/putrescine-binding periplasmic protein compare
Pf1N1B4_182 -1.6 -2.3 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Pf1N1B4_3328 -1.6 -1.8 Rhodanese-like domain protein compare
Pf1N1B4_1430 -1.6 -2.0 Predicted signal transduction protein compare
Pf1N1B4_1906 -1.6 -2.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4035 -1.6 -1.3 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_4065 -1.6 -4.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4156 -1.6 -1.3 putative secreted protein compare
Pf1N1B4_4052 -1.6 -4.1 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2167 -1.6 -4.4 Ammonium transporter compare
Pf1N1B4_2874 -1.6 -1.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2060 -1.6 -1.6 hypothetical protein compare
Pf1N1B4_2208 -1.6 -3.9 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_4417 -1.6 -2.2 Transcriptional regulator compare
Pf1N1B4_348 -1.6 -2.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4154 -1.6 -2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_886 -1.6 -1.6 FIG137478: Hypothetical protein compare
Pf1N1B4_1993 -1.6 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_3905 -1.5 -2.5 FIG00953423: hypothetical protein compare
Pf1N1B4_541 -1.5 -2.9 hypothetical protein compare
Pf1N1B4_1625 -1.5 -3.0 FIG00956267: hypothetical protein compare
Pf1N1B4_2549 -1.5 -4.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1565 -1.5 -2.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2917 -1.5 -5.1 FIG140336: TPR domain protein compare
Pf1N1B4_5519 -1.5 -2.0 hypothetical protein compare
Pf1N1B4_556 -1.5 -2.5 Gluconate permease compare
Pf1N1B4_4487 -1.5 -2.1 FIG00955631: hypothetical protein compare
Pf1N1B4_3506 -1.5 -3.8 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_5695 -1.5 -2.6 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_2210 -1.5 -1.2 Glutamate transport ATP-binding protein compare
Pf1N1B4_63 -1.5 -1.7 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_1610 -1.5 -2.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2272 -1.5 -2.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2884 -1.5 -3.3 Paraquat-inducible protein A compare
Pf1N1B4_5283 -1.5 -2.1 hypothetical protein compare
Pf1N1B4_1756 -1.5 -2.5 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_4897 -1.4 -1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_1558 -1.4 -1.6 Transcriptional regulator PhaD compare
Pf1N1B4_2783 -1.4 -1.2 Transcription elongation factor GreB-related protein compare
Pf1N1B4_2807 -1.4 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_5631 -1.4 -2.1 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5348 -1.4 -2.2 hypothetical protein compare
Pf1N1B4_5762 -1.4 -1.5 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_3508 -1.4 -2.1 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_5504 -1.4 -3.3 hypothetical protein compare
Pf1N1B4_4835 -1.4 -1.5 Carbon starvation protein A compare
Pf1N1B4_4488 -1.4 -2.2 Sensory box histidine kinase/response regulator compare
Pf1N1B4_4208 -1.4 -1.8 organophosphate pesticide hydrolase compare
Pf1N1B4_3093 -1.4 -1.3 Outer membrane protein H precursor compare
Pf1N1B4_2835 -1.4 -3.0 hypothetical protein compare
Pf1N1B4_2282 -1.4 -4.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4446 -1.4 -1.0 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2980 -1.4 -2.3 Acetylornithine aminotransferase (EC 2.6.1.11) compare
Pf1N1B4_2176 -1.4 -1.8 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_1624 -1.4 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_5509 -1.4 -1.8 hypothetical protein compare
Pf1N1B4_4108 -1.4 -1.1 Hydrolase, alpha/beta fold family compare
Pf1N1B4_2879 -1.4 -3.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1593 -1.4 -1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4569 -1.3 -1.3 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_3911 -1.3 -2.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_4222 -1.3 -3.5 putative tyrosinase compare
Pf1N1B4_2026 -1.3 -2.4 Transcriptional regulator compare
Pf1N1B4_3833 -1.3 -4.8 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_652 -1.3 -5.6 Sensory box histidine kinase compare
Pf1N1B4_5249 -1.3 -2.2 Outer membrane protein A precursor compare
Pf1N1B4_5447 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_81 -1.3 -1.6 Putative sulfate permease compare
Pf1N1B4_3855 -1.3 -1.8 Chromosome partition protein smc compare
Pf1N1B4_3595 -1.3 -1.0 Flagellin protein FlaG compare
Pf1N1B4_3816 -1.3 -3.1 FIG139976: hypothetical protein compare
Pf1N1B4_5501 -1.3 -3.2 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrite across organisms