Experiment set11IT045 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1611 -4.3 -7.6 Nitrogen regulation protein NR(I) compare
Pf1N1B4_4040 -4.1 -4.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2272 -4.0 -6.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_6 -3.9 -6.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_327 -3.9 -3.8 hypothetical protein compare
Pf1N1B4_2005 -3.7 -3.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1408 -3.6 -4.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2548 -3.4 -7.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1534 -3.4 -18.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1533 -3.4 -12.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_58 -3.4 -7.1 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1315 -3.4 -10.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2547 -3.4 -5.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1610 -3.3 -5.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_5666 -3.2 -5.1 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1434 -3.2 -7.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2893 -3.2 -8.6 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_2105 -3.1 -4.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1831 -3.1 -12.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_4029 -3.1 -5.1 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1624 -3.0 -10.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3081 -3.0 -19.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2526 -2.9 -15.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_2545 -2.9 -14.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2880 -2.9 -12.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_15 -2.8 -4.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_762 -2.8 -8.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1627 -2.8 -5.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_4038 -2.8 -3.3 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_5224 -2.8 -3.2 tRNA-Arg-CCT compare
Pf1N1B4_4028 -2.8 -4.9 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2009 -2.8 -7.8 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1626 -2.7 -9.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2549 -2.6 -9.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_742 -2.6 -9.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_3518 -2.6 -3.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_350 -2.6 -7.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_5925 -2.6 -10.2 hypothetical protein compare
Pf1N1B4_1067 -2.6 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1617 -2.6 -10.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3906 -2.5 -5.0 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1565 -2.5 -4.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5665 -2.4 -6.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_3153 -2.4 -3.6 hypothetical protein compare
Pf1N1B4_2303 -2.4 -10.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_5926 -2.4 -12.3 hypothetical protein compare
Pf1N1B4_2282 -2.3 -10.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1024 -2.3 -6.3 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_4041 -2.3 -5.1 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_1830 -2.3 -9.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2338 -2.3 -8.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1781 -2.2 -2.2 hypothetical protein compare
Pf1N1B4_3506 -2.2 -6.2 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2858 -2.2 -9.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_603 -2.2 -5.9 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2885 -2.2 -6.9 Paraquat-inducible protein A compare
Pf1N1B4_1668 -2.1 -6.6 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_3296 -2.1 -4.1 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_2010 -2.1 -6.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2850 -2.1 -9.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_847 -2.1 -7.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2280 -2.1 -8.5 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2011 -2.0 -7.3 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2384 -2.0 -9.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2380 -2.0 -11.0 Cytochrome B561 compare
Pf1N1B4_3812 -2.0 -6.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4065 -2.0 -6.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2085 -2.0 -3.2 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_1307 -1.9 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2112 -1.9 -11.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_12 -1.9 -6.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2878 -1.9 -8.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2879 -1.8 -5.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_821 -1.8 -8.5 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_3143 -1.8 -2.5 RecA protein compare
Pf1N1B4_1906 -1.8 -4.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1535 -1.8 -2.8 hypothetical protein compare
Pf1N1B4_3356 -1.7 -1.8 Cyclic nucleotide-binding protein compare
Pf1N1B4_2886 -1.7 -9.7 Paraquat-inducible protein B compare
Pf1N1B4_3833 -1.7 -8.1 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_784 -1.7 -8.2 Transcriptional activator MetR conserved
Pf1N1B4_3751 -1.7 -2.2 FIG00953060: hypothetical protein compare
Pf1N1B4_1619 -1.7 -8.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_5924 -1.7 -7.8 hypothetical protein compare
Pf1N1B4_2337 -1.7 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2169 -1.6 -2.7 FIG00953808: hypothetical protein compare
Pf1N1B4_2381 -1.6 -8.5 Protein yceI precursor compare
Pf1N1B4_5342 -1.6 -2.3 hypothetical protein compare
Pf1N1B4_3582 -1.6 -1.9 C-methyltransferase compare
Pf1N1B4_974 -1.6 -2.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1159 -1.6 -3.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_201 -1.6 -2.2 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_5829 -1.6 -2.9 FIG005107: hypothetical protein compare
Pf1N1B4_3364 -1.5 -2.3 Cyn operon transcriptional activator compare
Pf1N1B4_2167 -1.5 -3.9 Ammonium transporter compare
Pf1N1B4_2446 -1.5 -5.5 miscellaneous; unknown compare
Pf1N1B4_4299 -1.5 -3.6 sensor histidine kinase compare
Pf1N1B4_600 -1.5 -5.2 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_2445 -1.5 -6.2 FIG00506946: hypothetical protein compare
Pf1N1B4_2444 -1.5 -7.0 Cholesterol oxidase (EC 1.1.3.6) compare
Pf1N1B4_1057 -1.5 -2.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_556 -1.5 -3.1 Gluconate permease compare
Pf1N1B4_1625 -1.4 -3.5 FIG00956267: hypothetical protein compare
Pf1N1B4_898 -1.4 -6.4 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_2501 -1.4 -6.4 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf1N1B4_1234 -1.4 -3.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4035 -1.4 -2.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2859 -1.4 -8.0 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2421 -1.4 -2.9 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_5695 -1.3 -3.2 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_1236 -1.3 -5.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_602 -1.3 -2.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_4485 -1.3 -1.4 membrane protein, putative compare
Pf1N1B4_3451 -1.3 -3.3 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_2870 -1.3 -2.0 Regulator of competence-specific genes compare
Pf1N1B4_4039 -1.3 -3.6 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4678 -1.3 -4.1 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_4030 -1.3 -1.7 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1936 -1.2 -5.0 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_652 -1.2 -6.6 Sensory box histidine kinase compare
Pf1N1B4_1540 -1.2 -2.6 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_3627 -1.2 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_4001 -1.2 -2.2 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_5682 -1.2 -2.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_3408 -1.2 -1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_2172 -1.2 -2.9 Protein of unknown function DUF484 compare
Pf1N1B4_2334 -1.2 -2.2 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_3069 -1.2 -2.3 FIG00954614: hypothetical protein compare
Pf1N1B4_4835 -1.1 -1.2 Carbon starvation protein A compare
Pf1N1B4_2917 -1.1 -5.7 FIG140336: TPR domain protein compare
Pf1N1B4_2503 -1.1 -6.1 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_3038 -1.1 -3.4 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_1492 -1.1 -1.2 FIG00959437: hypothetical protein compare
Pf1N1B4_866 -1.1 -1.4 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3011 -1.1 -1.5 Tyrosine recombinase XerD compare
Pf1N1B4_4939 -1.1 -2.7 sodium/hydrogen exchanger family protein compare
Pf1N1B4_275 -1.1 -1.4 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_267 -1.0 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_1544 -1.0 -5.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2228 -1.0 -2.9 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_414 -1.0 -1.9 transcriptional regulator compare
Pf1N1B4_777 -1.0 -4.6 Membrane protein glpM compare
Pf1N1B4_2499 -1.0 -4.6 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_716 -1.0 -2.4 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_2225 -1.0 -5.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_5927 -1.0 -8.4 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_765 -1.0 -1.5 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_5972 -1.0 -2.1 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_4257 -1.0 -1.3 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2350 -1.0 -2.9 UPF0301 protein YqgE compare
Pf1N1B4_835 -1.0 -2.3 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_1475 -1.0 -3.7 FIG00962376: hypothetical protein compare
Pf1N1B4_4285 -1.0 -2.5 Inositol transport system sugar-binding protein compare
Pf1N1B4_3508 -1.0 -3.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2106 -1.0 -2.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1146 -1.0 -4.6 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Pf1N1B4_2208 -1.0 -3.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_787 -0.9 -1.5 Nudix hydrolase family protein PA3470 compare
Pf1N1B4_5892 -0.9 -2.3 FIG00961753: hypothetical protein compare
Pf1N1B4_5383 -0.9 -5.6 hypothetical protein compare
Pf1N1B4_3783 -0.9 -1.8 FIG00958237: hypothetical protein compare
Pf1N1B4_2884 -0.9 -3.0 Paraquat-inducible protein A compare
Pf1N1B4_1115 -0.9 -5.2 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4474 -0.9 -1.7 transcription regulator protein compare
Pf1N1B4_1328 -0.9 -1.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2114 -0.9 -3.8 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_5074 -0.9 -2.5 Gluconate permease compare
Pf1N1B4_906 -0.9 -3.0 Glutaredoxin NrdH compare
Pf1N1B4_4969 -0.9 -1.5 FIG00956189: hypothetical protein compare
Pf1N1B4_2502 -0.9 -2.6 Coenzyme PQQ synthesis protein B compare
Pf1N1B4_846 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_3281 -0.9 -1.9 AidA compare
Pf1N1B4_1003 -0.9 -1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4699 -0.9 -1.7 Multidrug translocase MdfA compare
Pf1N1B4_2252 -0.9 -2.3 Organosulfonate utilization protein SsuF compare
Pf1N1B4_1126 -0.9 -1.9 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_1892 -0.9 -2.0 ABC transporter ATP-binding protein USSDB6B compare
Pf1N1B4_1708 -0.9 -3.2 Efflux transporter, RND family, MFP subunit compare
Pf1N1B4_5725 -0.9 -1.5 High-affinity iron permease compare
Pf1N1B4_1749 -0.9 -1.1 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_1782 -0.9 -1.0 hypothetical protein compare
Pf1N1B4_823 -0.9 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_648 -0.9 -7.7 Outer membrane porin, OprD family compare
Pf1N1B4_4127 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_718 -0.9 -3.5 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_2401 -0.9 -1.7 Lipoprotein, putative compare
Pf1N1B4_1472 -0.9 -1.1 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_3065 -0.8 -1.7 FIG00954412: hypothetical protein compare
Pf1N1B4_1235 -0.8 -3.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_1566 -0.8 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2739 -0.8 -1.8 acetyltransferase, GNAT family compare
Pf1N1B4_2874 -0.8 -1.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5575 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_678 -0.8 -4.5 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_5560 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_1870 -0.8 -1.7 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1370 -0.8 -0.9 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_5385 -0.8 -2.9 hypothetical protein compare
Pf1N1B4_3273 -0.8 -1.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_5105 -0.8 -1.9 Peptide ABC transporter, ATP-binding protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrite across organisms