Experiment set11IT044 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrite 1mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2547 -5.2 -3.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_5666 -4.9 -5.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1307 -4.4 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_327 -4.1 -4.0 hypothetical protein compare
Pf1N1B4_15 -4.1 -7.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1408 -3.8 -5.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1534 -3.8 -21.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2880 -3.7 -14.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_6 -3.6 -7.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1434 -3.6 -9.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_5665 -3.5 -6.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1610 -3.5 -6.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1533 -3.5 -13.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3812 -3.5 -13.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1624 -3.5 -10.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2338 -3.5 -13.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1831 -3.4 -13.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2545 -3.3 -16.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_4038 -3.3 -5.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1626 -3.3 -10.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_603 -3.2 -4.9 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_742 -3.2 -11.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_58 -3.2 -7.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1565 -3.1 -5.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2893 -3.1 -9.1 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_2303 -3.1 -12.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2272 -3.0 -6.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1315 -3.0 -9.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1067 -3.0 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4029 -2.8 -5.1 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2384 -2.8 -11.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1627 -2.7 -5.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2548 -2.7 -7.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2526 -2.7 -15.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4040 -2.7 -3.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2858 -2.7 -12.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3081 -2.7 -18.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2549 -2.6 -8.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2850 -2.6 -10.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2282 -2.6 -10.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2337 -2.6 -7.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3518 -2.5 -3.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1611 -2.5 -4.8 Nitrogen regulation protein NR(I) compare
Pf1N1B4_350 -2.5 -8.5 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_4041 -2.4 -3.5 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2005 -2.4 -3.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2879 -2.3 -7.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1006 -2.3 -7.1 Permease of the drug/metabolite transporter (DMT) superfamily conserved
Pf1N1B4_4039 -2.3 -6.1 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1906 -2.3 -5.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1619 -2.3 -11.2 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2112 -2.2 -13.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1535 -2.2 -4.0 hypothetical protein compare
Pf1N1B4_762 -2.2 -5.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1830 -2.2 -7.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5224 -2.2 -4.4 tRNA-Arg-CCT compare
Pf1N1B4_784 -2.1 -9.2 Transcriptional activator MetR conserved
Pf1N1B4_12 -2.1 -5.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2878 -2.1 -7.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_5926 -2.1 -13.2 hypothetical protein compare
Pf1N1B4_847 -2.0 -6.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1617 -2.0 -7.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2010 -2.0 -5.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2011 -1.9 -7.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5925 -1.9 -10.0 hypothetical protein compare
Pf1N1B4_2886 -1.9 -11.2 Paraquat-inducible protein B compare
Pf1N1B4_3506 -1.9 -7.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2009 -1.9 -5.1 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_3501 -1.9 -7.3 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_2885 -1.9 -7.1 Paraquat-inducible protein A compare
Pf1N1B4_1625 -1.8 -4.3 FIG00956267: hypothetical protein compare
Pf1N1B4_1234 -1.8 -3.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1115 -1.8 -10.0 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_2105 -1.8 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3906 -1.8 -5.4 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1024 -1.7 -5.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_2917 -1.7 -8.0 FIG140336: TPR domain protein compare
Pf1N1B4_821 -1.7 -7.7 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_3143 -1.7 -4.7 RecA protein compare
Pf1N1B4_2380 -1.6 -10.5 Cytochrome B561 compare
Pf1N1B4_2225 -1.6 -9.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_974 -1.6 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4212 -1.6 -3.4 Gfa-like protein compare
Pf1N1B4_602 -1.6 -2.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_348 -1.6 -4.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4035 -1.6 -1.8 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3153 -1.5 -3.2 hypothetical protein compare
Pf1N1B4_4299 -1.5 -4.2 sensor histidine kinase compare
Pf1N1B4_2381 -1.5 -8.5 Protein yceI precursor compare
Pf1N1B4_2499 -1.5 -6.8 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_4065 -1.5 -5.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4030 -1.5 -1.7 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_2283 -1.4 -2.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1590 -1.4 -5.9 Histidine utilization repressor compare
Pf1N1B4_556 -1.4 -3.3 Gluconate permease compare
Pf1N1B4_5904 -1.4 -1.8 FIG00955320: hypothetical protein compare
Pf1N1B4_1008 -1.4 -2.2 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_3468 -1.4 -2.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2208 -1.4 -5.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_2167 -1.4 -4.6 Ammonium transporter compare
Pf1N1B4_2280 -1.4 -6.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1057 -1.3 -2.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_898 -1.3 -6.5 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_3833 -1.3 -6.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1118 -1.3 -2.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1668 -1.3 -5.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_5924 -1.3 -6.2 hypothetical protein compare
Pf1N1B4_3222 -1.3 -1.8 Ferredoxin compare
Pf1N1B4_648 -1.2 -11.1 Outer membrane porin, OprD family compare
Pf1N1B4_2501 -1.2 -6.4 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf1N1B4_4004 -1.2 -2.3 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_647 -1.2 -6.1 hypothetical protein compare
Pf1N1B4_1236 -1.2 -5.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_5650 -1.2 -3.1 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf1N1B4_2228 -1.2 -3.5 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_4028 -1.2 -2.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_291 -1.2 -6.8 Major outer membrane lipoprotein I compare
Pf1N1B4_2859 -1.2 -7.4 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3093 -1.2 -1.4 Outer membrane protein H precursor compare
Pf1N1B4_3368 -1.2 -2.5 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_3152 -1.2 -4.1 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_2503 -1.2 -6.5 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_3840 -1.2 -3.0 Response regulator NasT compare
Pf1N1B4_4870 -1.1 -2.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_1153 -1.1 -2.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1566 -1.1 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5619 -1.1 -4.2 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_3864 -1.1 -4.2 Recombination protein RecR compare
Pf1N1B4_1403 -1.1 -4.6 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_475 -1.1 -3.1 ABC-type multidrug transport system, permease component compare
Pf1N1B4_1317 -1.1 -1.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_3325 -1.1 -1.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_3184 -1.1 -2.1 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_4678 -1.0 -4.0 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_501 -1.0 -1.8 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_652 -1.0 -6.0 Sensory box histidine kinase compare
Pf1N1B4_336 -1.0 -7.7 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_2006 -1.0 -2.8 hypothetical protein compare
Pf1N1B4_636 -1.0 -3.1 4-hydroxybenzoyl-CoA thioesterase family active site compare
Pf1N1B4_3508 -1.0 -3.1 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_3582 -1.0 -1.1 C-methyltransferase compare
Pf1N1B4_3816 -1.0 -4.2 FIG139976: hypothetical protein compare
Pf1N1B4_159 -1.0 -2.1 Putative threonine efflux protein compare
Pf1N1B4_3372 -1.0 -2.2 FIG00962464: hypothetical protein compare
Pf1N1B4_304 -1.0 -1.6 Deoxyribonuclease TatD compare
Pf1N1B4_1554 -1.0 -5.0 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_1781 -1.0 -2.5 hypothetical protein compare
Pf1N1B4_5560 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_2273 -1.0 -3.8 hypothetical protein compare
Pf1N1B4_2734 -1.0 -1.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_600 -1.0 -3.7 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_4931 -0.9 -2.5 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_1095 -0.9 -6.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf1N1B4_5342 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_2884 -0.9 -2.7 Paraquat-inducible protein A compare
Pf1N1B4_777 -0.9 -4.0 Membrane protein glpM compare
Pf1N1B4_3408 -0.9 -1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_2334 -0.9 -1.8 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_2252 -0.9 -2.3 Organosulfonate utilization protein SsuF compare
Pf1N1B4_2284 -0.9 -2.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4858 -0.9 -3.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_77 -0.9 -1.9 FIG00956064: hypothetical protein compare
Pf1N1B4_2352 -0.9 -3.9 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_2502 -0.9 -2.6 Coenzyme PQQ synthesis protein B compare
Pf1N1B4_6041 -0.9 -1.6 Carbon storage regulator compare
Pf1N1B4_5682 -0.9 -1.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_289 -0.9 -7.1 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_5620 -0.8 -1.6 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_3817 -0.8 -3.0 FIG008443: hypothetical protein compare
Pf1N1B4_971 -0.8 -6.5 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_4835 -0.8 -1.2 Carbon starvation protein A compare
Pf1N1B4_3541 -0.8 -3.2 FIG027190: Putative transmembrane protein compare
Pf1N1B4_5894 -0.8 -2.5 Glycosyltransferase compare
Pf1N1B4_4614 -0.8 -3.0 Membrane alanine aminopeptidase N (EC 3.4.11.2) compare
Pf1N1B4_4582 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_3113 -0.8 -5.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_5927 -0.8 -7.1 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_3458 -0.8 -0.8 hypothetical protein compare
Pf1N1B4_970 -0.8 -5.0 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_2214 -0.8 -1.6 Transcriptional regulator, GntR family compare
Pf1N1B4_1462 -0.8 -5.5 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_275 -0.8 -1.6 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_476 -0.8 -2.8 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_4478 -0.8 -1.9 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_5659 -0.8 -5.1 NfuA Fe-S protein maturation compare
Pf1N1B4_2172 -0.8 -2.7 Protein of unknown function DUF484 compare
Pf1N1B4_63 -0.8 -2.6 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_136 -0.8 -2.8 Outer membrane pyoverdine eflux protein compare
Pf1N1B4_4419 -0.8 -1.8 Organosulfonate utilization protein SsuF compare
Pf1N1B4_5187 -0.8 -1.3 5S RNA compare
Pf1N1B4_5973 -0.7 -3.0 Probable permease of ABC transporter compare
Pf1N1B4_952 -0.7 -1.8 Cell division protein MraZ compare
Pf1N1B4_262 -0.7 -6.4 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_4857 -0.7 -2.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2400 -0.7 -1.7 FIG00955006: hypothetical protein compare
Pf1N1B4_430 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_3126 -0.7 -2.3 Phage tail length tape-measure protein compare
Pf1N1B4_1116 -0.7 -4.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_3585 -0.7 -2.2 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Pf1N1B4_2008 -0.7 -4.7 Phosphogluconate repressor HexR, RpiR family compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrite across organisms