Experiment set11IT044 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrite 1mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_558 +1.3 8.4 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf1N1B4_4132 +1.2 2.8 Mobile element protein compare
Pf1N1B4_2870 +1.1 2.2 Regulator of competence-specific genes compare
Pf1N1B4_4855 +1.1 2.1 Response regulator compare
Pf1N1B4_3591 +1.1 7.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_1465 +1.0 8.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_2247 +1.0 3.0 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_448 +1.0 3.2 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_1463 +1.0 6.7 hypothetical protein compare
Pf1N1B4_526 +0.9 3.0 Undecaprenyl pyrophosphate synthase compare
Pf1N1B4_919 +0.9 3.6 hypothetical protein compare
Pf1N1B4_4982 +0.9 2.0 Transcriptional regulator, AraC family compare
Pf1N1B4_3590 +0.9 5.5 hypothetical protein compare
Pf1N1B4_1466 +0.9 3.1 hypothetical protein compare
Pf1N1B4_4539 +0.9 4.0 Uncharacterized protein homologous to Paeru. PA2364 compare
Pf1N1B4_527 +0.9 5.2 Cytosine/purine/uracil/thiamine/allantoin permease family protein compare
Pf1N1B4_69 +0.9 2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1457 +0.9 5.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_733 +0.9 2.3 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_909 +0.9 3.4 Ketosteroid isomerase-related protein compare
Pf1N1B4_4669 +0.8 2.3 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_92 +0.8 2.1 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_1691 +0.8 1.6 hypothetical protein compare
Pf1N1B4_740 +0.8 2.1 Leucyl-tRNA synthetase compare
Pf1N1B4_1464 +0.8 5.5 Glycosyl transferase compare
Pf1N1B4_2493 +0.8 3.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_5930 +0.8 5.1 Exopolysaccharide production protein ExoZ compare
Pf1N1B4_4470 +0.8 2.5 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_1212 +0.8 2.8 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_967 +0.8 2.2 hypothetical protein compare
Pf1N1B4_5331 +0.8 1.7 hypothetical protein compare
Pf1N1B4_3620 +0.8 1.5 Flagellar biosynthesis protein FliR compare
Pf1N1B4_1310 +0.8 3.3 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_5371 +0.8 1.4 hypothetical protein compare
Pf1N1B4_753 +0.8 2.5 hypothetical protein compare
Pf1N1B4_3767 +0.7 2.7 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf1N1B4_932 +0.7 2.4 FIG00963370: hypothetical protein compare
Pf1N1B4_3273 +0.7 1.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_1458 +0.7 4.4 Probable transcription regulator Mig-14 compare
Pf1N1B4_5568 +0.7 2.0 hypothetical protein compare
Pf1N1B4_3843 +0.7 2.8 Ribosome modulation factor compare
Pf1N1B4_2296 +0.7 2.3 FIG00350678: hypothetical protein compare
Pf1N1B4_799 +0.7 1.0 hypothetical protein compare
Pf1N1B4_1370 +0.7 1.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_198 +0.7 2.8 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_1191 +0.7 1.8 hypothetical protein compare
Pf1N1B4_5425 +0.7 1.6 DNA-binding protein HU-beta compare
Pf1N1B4_5059 +0.7 1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_4784 +0.7 2.5 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases compare
Pf1N1B4_1583 +0.7 3.4 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf1N1B4_901 +0.7 3.3 hypothetical protein compare
Pf1N1B4_1683 +0.7 1.8 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4404 +0.7 1.5 Transcriptional regulator, LysR family compare
Pf1N1B4_5058 +0.7 2.5 D-galactarate permease compare
Pf1N1B4_3997 +0.7 4.3 Uncharacterized protein YtfM precursor compare
Pf1N1B4_4374 +0.7 2.0 hypothetical protein compare
Pf1N1B4_2234 +0.7 2.4 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_267 +0.7 1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_3785 +0.6 1.6 FOG: Ankyrin repeat compare
Pf1N1B4_4107 +0.6 1.8 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_4355 +0.6 2.3 Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-) compare
Pf1N1B4_4594 +0.6 2.2 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_2177 +0.6 1.0 FIG00953342: hypothetical protein compare
Pf1N1B4_5306 +0.6 2.4 hypothetical protein compare
Pf1N1B4_4640 +0.6 2.8 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_5897 +0.6 2.3 FIG00963512: hypothetical protein compare
Pf1N1B4_817 +0.6 2.1 FIG00955104: hypothetical protein compare
Pf1N1B4_695 +0.6 1.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_2096 +0.6 1.5 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_2322 +0.6 1.5 FIG015547: peptidase, M16 family compare
Pf1N1B4_1819 +0.6 2.4 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_2774 +0.6 1.5 hypothetical protein compare
Pf1N1B4_5483 +0.6 1.2 hypothetical protein compare
Pf1N1B4_3069 +0.6 1.8 FIG00954614: hypothetical protein compare
Pf1N1B4_4999 +0.6 1.9 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_1874 +0.6 1.9 FIG00953549: hypothetical protein compare
Pf1N1B4_117 +0.6 2.6 Iron siderophore sensor protein compare
Pf1N1B4_3917 +0.6 2.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3966 +0.6 2.2 serine/threonine protein kinase compare
Pf1N1B4_4700 +0.6 1.9 FIG00956898: hypothetical protein compare
Pf1N1B4_2270 +0.6 2.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_5815 +0.6 1.7 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_4219 +0.6 1.4 FIG01074225: hypothetical protein compare
Pf1N1B4_5004 +0.6 2.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_115 +0.6 1.1 Membrane protein mosC compare
Pf1N1B4_2983 +0.6 1.5 hypothetical protein compare
Pf1N1B4_3447 +0.6 3.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_218 +0.6 3.1 Periplasmic binding protein compare
Pf1N1B4_2837 +0.6 3.1 FIG00956650: hypothetical protein compare
Pf1N1B4_1573 +0.6 2.1 Glucans biosynthesis protein G precursor compare
Pf1N1B4_47 +0.6 2.2 Copper resistance protein D compare
Pf1N1B4_3200 +0.6 2.0 Outer membrane lipoprotein compare
Pf1N1B4_3111 +0.5 1.6 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_1545 +0.5 3.9 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_4744 +0.5 2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_2211 +0.5 3.0 Putative amino acid ABC transporter, permease protein compare
Pf1N1B4_5760 +0.5 1.4 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_152 +0.5 1.5 ABC transporter, permease protein compare
Pf1N1B4_679 +0.5 1.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_1792 +0.5 1.7 Taurine transport ATP-binding protein TauB compare
Pf1N1B4_5370 +0.5 1.0 hypothetical protein compare
Pf1N1B4_3619 +0.5 2.1 Flagellar biosynthesis protein FliQ compare
Pf1N1B4_5763 +0.5 1.2 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_1461 +0.5 1.4 Protein fixF compare
Pf1N1B4_1326 +0.5 2.9 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf1N1B4_888 +0.5 2.6 Transglycosylase, Slt family compare
Pf1N1B4_1868 +0.5 3.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_696 +0.5 2.3 Acetolactate synthase, large subunit (EC 2.2.1.6) compare
Pf1N1B4_4622 +0.5 3.0 Nitrate/nitrite transporter compare
Pf1N1B4_4725 +0.5 1.8 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_3965 +0.5 1.5 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_590 +0.5 3.5 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_2840 +0.5 1.9 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_2210 +0.5 1.7 Glutamate transport ATP-binding protein compare
Pf1N1B4_2069 +0.5 2.3 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf1N1B4_4711 +0.5 2.6 hypothetical protein compare
Pf1N1B4_761 +0.5 1.5 FIG00954879: hypothetical protein compare
Pf1N1B4_2791 +0.5 1.9 Putative inner membrane protein (Fragment) compare
Pf1N1B4_5061 +0.5 1.9 Valyl-tRNA synthetase compare
Pf1N1B4_5242 +0.5 0.8 hypothetical protein compare
Pf1N1B4_2140 +0.5 1.6 FIG00957579: hypothetical protein compare
Pf1N1B4_5073 +0.5 1.5 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_4603 +0.5 0.7 hypothetical protein compare
Pf1N1B4_5591 +0.5 1.0 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_4047 +0.5 2.0 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf1N1B4_2949 +0.5 1.4 FIG00956396: hypothetical protein compare
Pf1N1B4_776 +0.5 1.5 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
Pf1N1B4_188 +0.5 0.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_232 +0.5 1.5 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3686 +0.5 3.0 Branched-chain amino acid transport system carrier protein compare
Pf1N1B4_5576 +0.5 1.5 hypothetical protein compare
Pf1N1B4_2362 +0.5 2.2 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf1N1B4_1482 +0.5 1.9 hypothetical protein compare
Pf1N1B4_5150 +0.5 2.2 FIG00933687: hypothetical protein compare
Pf1N1B4_2281 +0.5 1.9 Predicted integral membrane protein compare
Pf1N1B4_5589 +0.5 2.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) compare
Pf1N1B4_9 +0.5 1.5 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf1N1B4_5658 +0.5 1.9 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf1N1B4_3588 +0.5 1.1 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_4550 +0.5 1.5 beta-ketoacyl synthase, putative compare
Pf1N1B4_758 +0.5 2.0 Bacterioferritin compare
Pf1N1B4_1011 +0.5 1.9 ribosomal subunit interface protein, putative compare
Pf1N1B4_662 +0.5 1.5 FIG00955875: hypothetical protein compare
Pf1N1B4_3594 +0.5 1.0 Flagellin protein FlaA compare
Pf1N1B4_3613 +0.5 1.0 hypothetical protein compare
Pf1N1B4_5814 +0.5 1.2 putative membrane protein compare
Pf1N1B4_4687 +0.5 2.8 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
Pf1N1B4_3746 +0.5 1.7 ABC transporter permease protein compare
Pf1N1B4_5219 +0.5 1.3 tRNA-Gly-CCC compare
Pf1N1B4_101 +0.5 1.5 hypothetical protein compare
Pf1N1B4_1107 +0.5 1.9 D-galactarate dehydratase (EC 4.2.1.42) compare
Pf1N1B4_4668 +0.5 1.4 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_2442 +0.5 1.2 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_1485 +0.5 1.9 FIG00963848: hypothetical protein compare
Pf1N1B4_749 +0.5 0.9 hypothetical protein compare
Pf1N1B4_103 +0.5 2.1 Histidine permease YuiF compare
Pf1N1B4_1456 +0.5 2.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_2623 +0.5 2.4 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_1887 +0.5 1.6 probable exported protein YPO0432 compare
Pf1N1B4_2707 +0.5 2.1 Putative membrane protein compare
Pf1N1B4_3998 +0.5 1.6 putative exported protein compare
Pf1N1B4_4972 +0.5 1.0 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_1189 +0.5 2.6 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf1N1B4_4274 +0.5 1.5 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain compare
Pf1N1B4_108 +0.5 1.5 FIG00954456: hypothetical protein compare
Pf1N1B4_3520 +0.5 2.2 Phosphohistidine phosphatase SixA compare
Pf1N1B4_1750 +0.5 0.7 Death on curing protein, Doc toxin compare
Pf1N1B4_5912 +0.5 1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5062 +0.5 1.9 Homospermidine synthase (EC 2.5.1.44) compare
Pf1N1B4_1441 +0.5 3.5 Putative esterase, FIGfam005057 compare
Pf1N1B4_3409 +0.5 2.5 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf1N1B4_3973 +0.4 1.5 ABC-type spermidine/putrescine transport system, permease component I compare
Pf1N1B4_3483 +0.4 1.9 Transcriptional regulatory protein PhoP compare
Pf1N1B4_1334 +0.4 0.8 FIG00955840: hypothetical protein compare
Pf1N1B4_2290 +0.4 2.3 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf1N1B4_2067 +0.4 1.9 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_2425 +0.4 1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_511 +0.4 1.8 hypothetical protein compare
Pf1N1B4_4551 +0.4 1.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_3308 +0.4 2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_814 +0.4 0.9 Transcriptional regulator, PadR family compare
Pf1N1B4_35 +0.4 1.2 hypothetical protein compare
Pf1N1B4_233 +0.4 1.5 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
Pf1N1B4_4886 +0.4 2.2 Phosphoglucomutase (EC 5.4.2.2) compare
Pf1N1B4_2102 +0.4 1.1 hypothetical protein compare
Pf1N1B4_769 +0.4 2.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_5355 +0.4 2.3 hypothetical protein compare
Pf1N1B4_3687 +0.4 1.9 FIG00953885: hypothetical protein compare
Pf1N1B4_2443 +0.4 2.4 acetyltransferase, GNAT family compare
Pf1N1B4_3056 +0.4 1.5 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_3708 +0.4 0.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf1N1B4_106 +0.4 1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1517 +0.4 1.5 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf1N1B4_1329 +0.4 2.0 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_2991 +0.4 2.1 hypothetical protein compare
Pf1N1B4_5292 +0.4 1.1 hypothetical protein compare
Pf1N1B4_4810 +0.4 1.1 Polymyxin resistance protein PmrM compare
Pf1N1B4_545 +0.4 1.8 MadN protein compare
Pf1N1B4_5695 +0.4 1.5 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_1866 +0.4 1.5 Methionine ABC transporter ATP-binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrite across organisms