Experiment set11IT043 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrate 5mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_236 -5.2 -5.1 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_15 -5.2 -3.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_6 -5.0 -4.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5665 -4.5 -8.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1533 -4.4 -11.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1534 -4.4 -25.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2547 -4.3 -5.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2880 -4.2 -15.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1624 -4.0 -10.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_350 -3.8 -10.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_742 -3.8 -12.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_12 -3.8 -9.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2338 -3.8 -10.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2384 -3.7 -14.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2303 -3.6 -15.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_4030 -3.6 -4.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1831 -3.5 -13.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2272 -3.5 -7.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1679 -3.5 -4.1 Membrane-fusion protein compare
Pf1N1B4_2549 -3.4 -10.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1315 -3.4 -9.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2548 -3.3 -8.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1627 -3.3 -6.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2545 -3.2 -14.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_3506 -3.2 -8.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_3081 -3.2 -21.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_5666 -3.1 -5.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_847 -3.1 -8.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2282 -3.1 -11.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1434 -3.1 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1067 -3.0 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4040 -3.0 -4.4 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1626 -2.9 -8.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2112 -2.9 -14.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1610 -2.9 -3.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2337 -2.9 -6.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_58 -2.9 -6.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3835 -2.9 -15.3 Nitrate reductase (EC 1.7.99.4) (from data) conserved
Pf1N1B4_1307 -2.9 -2.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_4035 -2.9 -3.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_1057 -2.8 -4.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2858 -2.8 -11.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_762 -2.7 -7.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3812 -2.7 -9.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1617 -2.7 -10.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2010 -2.7 -7.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_3328 -2.7 -2.5 Rhodanese-like domain protein compare
Pf1N1B4_1830 -2.7 -9.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3697 -2.7 -6.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2167 -2.6 -7.7 Ammonium transporter compare
Pf1N1B4_3153 -2.6 -3.9 hypothetical protein compare
Pf1N1B4_5224 -2.6 -3.2 tRNA-Arg-CCT compare
Pf1N1B4_237 -2.6 -4.0 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_4065 -2.6 -6.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1668 -2.6 -6.7 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2526 -2.6 -14.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_2878 -2.5 -10.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2879 -2.5 -7.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_327 -2.5 -3.2 hypothetical protein compare
Pf1N1B4_418 -2.5 -6.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf1N1B4_1565 -2.4 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_3518 -2.4 -3.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3906 -2.3 -4.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2886 -2.3 -12.8 Paraquat-inducible protein B compare
Pf1N1B4_2009 -2.3 -5.3 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_235 -2.2 -6.5 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_1611 -2.2 -3.3 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2011 -2.2 -8.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_1408 -2.1 -3.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1870 -2.1 -2.8 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1625 -2.0 -3.0 FIG00956267: hypothetical protein compare
Pf1N1B4_1837 -2.0 -2.4 Osmotically inducible protein C compare
Pf1N1B4_2850 -2.0 -8.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4029 -2.0 -3.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3840 -2.0 -4.4 Response regulator NasT conserved
Pf1N1B4_4041 -2.0 -5.6 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_3837 -2.0 -8.3 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) conserved
Pf1N1B4_556 -2.0 -3.9 Gluconate permease compare
Pf1N1B4_3325 -2.0 -2.9 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1535 -1.9 -2.4 hypothetical protein compare
Pf1N1B4_3451 -1.9 -4.1 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_2885 -1.8 -5.6 Paraquat-inducible protein A compare
Pf1N1B4_5925 -1.8 -9.4 hypothetical protein compare
Pf1N1B4_5924 -1.8 -7.1 hypothetical protein compare
Pf1N1B4_345 -1.8 -1.8 Integration host factor beta subunit compare
Pf1N1B4_2105 -1.8 -2.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_5926 -1.8 -9.7 hypothetical protein compare
Pf1N1B4_448 -1.8 -2.4 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_890 -1.7 -2.8 DNA recombination and repair protein RecO compare
Pf1N1B4_2380 -1.7 -9.6 Cytochrome B561 compare
Pf1N1B4_1024 -1.6 -3.7 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_1906 -1.6 -3.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2949 -1.6 -2.0 FIG00956396: hypothetical protein compare
Pf1N1B4_2859 -1.5 -9.1 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3841 -1.5 -4.1 Nitrate ABC transporter, nitrate-binding protein compare
Pf1N1B4_2381 -1.5 -7.9 Protein yceI precursor compare
Pf1N1B4_102 -1.5 -2.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_718 -1.5 -5.2 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_2280 -1.4 -6.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3833 -1.4 -7.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_821 -1.4 -6.7 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_3839 -1.4 -5.1 Nitrate/nitrite transporter conserved
Pf1N1B4_3143 -1.4 -3.7 RecA protein compare
Pf1N1B4_1234 -1.3 -3.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2884 -1.3 -4.1 Paraquat-inducible protein A compare
Pf1N1B4_2502 -1.3 -5.0 Coenzyme PQQ synthesis protein B compare
Pf1N1B4_717 -1.3 -5.5 Iron-regulated protein A precursor compare
Pf1N1B4_1403 -1.3 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_1653 -1.3 -4.9 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_3445 -1.3 -2.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_977 -1.3 -3.1 Molybdenum cofactor biosynthesis protein MoaC compare
Pf1N1B4_1317 -1.2 -2.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_716 -1.2 -3.1 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_1590 -1.2 -4.8 Histidine utilization repressor compare
Pf1N1B4_4039 -1.2 -4.6 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_27 -1.2 -4.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_1236 -1.2 -4.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_5833 -1.1 -1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_1619 -1.1 -6.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_124 -1.1 -2.7 Mechanosensitive ion channel compare
Pf1N1B4_4417 -1.1 -3.1 Transcriptional regulator compare
Pf1N1B4_3443 -1.1 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_5383 -1.1 -7.4 hypothetical protein compare
Pf1N1B4_652 -1.1 -6.2 Sensory box histidine kinase compare
Pf1N1B4_4028 -1.1 -2.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_5927 -1.1 -9.1 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_2334 -1.1 -2.8 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_2401 -1.1 -2.0 Lipoprotein, putative compare
Pf1N1B4_1974 -1.1 -2.5 L-lysine permease compare
Pf1N1B4_4833 -1.1 -2.9 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2499 -1.1 -5.4 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_715 -1.1 -4.1 Iron-regulated protein A precursor compare
Pf1N1B4_5804 -1.0 -2.1 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_967 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_5622 -1.0 -1.4 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_2163 -1.0 -1.3 hypothetical protein compare
Pf1N1B4_1042 -1.0 -1.8 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_1608 -1.0 -1.7 FIG00956533: hypothetical protein compare
Pf1N1B4_2173 -1.0 -2.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_974 -1.0 -2.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_2503 -1.0 -6.2 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_1891 -1.0 -2.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_649 -1.0 -2.6 Small-conductance mechanosensitive channel compare
Pf1N1B4_4055 -1.0 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_4721 -1.0 -1.6 Nuclease inhibitor compare
Pf1N1B4_602 -1.0 -2.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_2225 -1.0 -6.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_5041 -1.0 -3.1 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_648 -1.0 -8.7 Outer membrane porin, OprD family compare
Pf1N1B4_4814 -1.0 -2.4 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_2925 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_3368 -1.0 -1.5 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_4299 -1.0 -3.2 sensor histidine kinase compare
Pf1N1B4_2228 -1.0 -2.3 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_2568 -1.0 -2.2 Translation elongation factor Tu compare
Pf1N1B4_2501 -0.9 -4.9 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf1N1B4_5072 -0.9 -2.1 Glycerol-3-phosphate regulon repressor compare
Pf1N1B4_2075 -0.9 -2.6 ABC-type antimicrobial peptide transport system, permease component compare
Pf1N1B4_197 -0.9 -1.8 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_1566 -0.9 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1544 -0.9 -4.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_475 -0.9 -3.2 ABC-type multidrug transport system, permease component compare
Pf1N1B4_2247 -0.9 -1.5 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_4004 -0.9 -2.3 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_1052 -0.9 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_3499 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_5678 -0.9 -2.5 sensory box histidine kinase/response regulator compare
Pf1N1B4_5659 -0.9 -6.2 NfuA Fe-S protein maturation compare
Pf1N1B4_5531 -0.9 -3.1 hypothetical protein compare
Pf1N1B4_756 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_485 -0.9 -3.0 L-lysine permease compare
Pf1N1B4_3356 -0.9 -1.6 Cyclic nucleotide-binding protein compare
Pf1N1B4_1251 -0.9 -3.3 2-Oxobutyrate oxidase, putative compare
Pf1N1B4_339 -0.9 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3816 -0.9 -3.6 FIG139976: hypothetical protein compare
Pf1N1B4_1266 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_3446 -0.9 -1.8 Putative GTPases (G3E family) compare
Pf1N1B4_2917 -0.9 -4.7 FIG140336: TPR domain protein compare
Pf1N1B4_647 -0.9 -5.0 hypothetical protein compare
Pf1N1B4_4755 -0.9 -2.5 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_429 -0.9 -2.9 FIG00964214: hypothetical protein compare
Pf1N1B4_5620 -0.9 -2.0 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_603 -0.9 -2.4 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_4140 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_578 -0.8 -1.4 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3573 -0.8 -2.8 Flagellar hook-associated protein FlgK compare
Pf1N1B4_2527 -0.8 -4.4 ApaG protein compare
Pf1N1B4_4419 -0.8 -1.8 Organosulfonate utilization protein SsuF compare
Pf1N1B4_2854 -0.8 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_5815 -0.8 -2.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_2352 -0.8 -3.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_430 -0.8 -0.8 hypothetical protein compare
Pf1N1B4_5574 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_899 -0.8 -1.5 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_4412 -0.8 -3.1 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_1730 -0.8 -1.8 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_2026 -0.8 -2.1 Transcriptional regulator compare
Pf1N1B4_3768 -0.8 -1.5 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_1191 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_3814 -0.8 -3.3 Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrate across organisms