Experiment set11IT040 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrite 0.1mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5924 -5.3 -8.4 hypothetical protein compare
Pf1N1B4_4035 -5.3 -3.6 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_5224 -4.7 -4.8 tRNA-Arg-CCT compare
Pf1N1B4_5926 -4.1 -10.9 hypothetical protein compare
Pf1N1B4_5925 -3.8 -7.9 hypothetical protein compare
Pf1N1B4_2870 -3.7 -2.7 Regulator of competence-specific genes compare
Pf1N1B4_2381 -3.4 -9.5 Protein yceI precursor compare
Pf1N1B4_58 -3.2 -7.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2853 -3.2 -2.9 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_4029 -3.2 -5.4 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2380 -3.0 -9.4 Cytochrome B561 compare
Pf1N1B4_5927 -2.7 -16.5 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_1610 -2.7 -3.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1906 -2.5 -5.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_15 -2.5 -4.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_932 -2.4 -1.9 FIG00963370: hypothetical protein compare
Pf1N1B4_3812 -2.4 -7.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1535 -2.3 -4.8 hypothetical protein compare
Pf1N1B4_3038 -2.2 -4.2 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2283 -2.2 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1533 -2.2 -8.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2545 -2.2 -11.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1812 -2.2 -2.9 Iron siderophore sensor protein compare
Pf1N1B4_1611 -2.2 -3.0 Nitrogen regulation protein NR(I) compare
Pf1N1B4_1627 -2.1 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_4551 -2.1 -2.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_5292 -2.1 -1.7 hypothetical protein compare
Pf1N1B4_5650 -2.1 -4.2 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf1N1B4_2858 -2.1 -8.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2547 -2.1 -2.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2548 -2.0 -4.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2005 -2.0 -2.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_3141 -2.0 -2.4 FIG00959768: hypothetical protein compare
Pf1N1B4_2284 -1.9 -4.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_5311 -1.9 -1.6 hypothetical protein compare
Pf1N1B4_485 -1.9 -4.5 L-lysine permease compare
Pf1N1B4_3866 -1.9 -1.6 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_3768 -1.9 -2.1 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5904 -1.9 -2.0 FIG00955320: hypothetical protein compare
Pf1N1B4_1534 -1.9 -11.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3081 -1.8 -13.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4678 -1.8 -3.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_4028 -1.8 -2.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1831 -1.8 -7.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2695 -1.8 -2.4 Rare lipoprotein A precursor compare
Pf1N1B4_2713 -1.7 -2.6 FIG00955339: hypothetical protein compare
Pf1N1B4_2880 -1.7 -7.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1351 -1.7 -4.6 Tabtoxin resistance protein compare
Pf1N1B4_1624 -1.7 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2878 -1.7 -6.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2549 -1.7 -5.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2682 -1.6 -2.1 Antiholin-like protein LrgA compare
Pf1N1B4_5357 -1.6 -1.6 hypothetical protein compare
Pf1N1B4_2886 -1.6 -7.8 Paraquat-inducible protein B compare
Pf1N1B4_762 -1.6 -5.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4040 -1.6 -2.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_4563 -1.6 -2.3 Sulfate transporter compare
Pf1N1B4_1024 -1.6 -3.4 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_2303 -1.6 -7.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_799 -1.6 -2.6 hypothetical protein compare
Pf1N1B4_742 -1.5 -5.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1565 -1.5 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_6 -1.5 -3.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2850 -1.5 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_556 -1.5 -3.6 Gluconate permease compare
Pf1N1B4_1619 -1.5 -7.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_1870 -1.5 -3.2 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_3833 -1.5 -5.8 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4974 -1.5 -1.5 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_847 -1.5 -5.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2150 -1.5 -2.0 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_5708 -1.4 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_3783 -1.4 -1.4 FIG00958237: hypothetical protein compare
Pf1N1B4_623 -1.4 -1.7 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_2334 -1.4 -1.8 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_1626 -1.4 -4.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1830 -1.4 -5.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_952 -1.4 -2.5 Cell division protein MraZ compare
Pf1N1B4_507 -1.4 -1.9 FIG00956448: hypothetical protein compare
Pf1N1B4_2177 -1.4 -1.0 FIG00953342: hypothetical protein compare
Pf1N1B4_4030 -1.4 -1.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4041 -1.4 -2.4 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4106 -1.4 -1.7 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_5665 -1.4 -3.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5619 -1.4 -1.6 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_1334 -1.4 -1.5 FIG00955840: hypothetical protein compare
Pf1N1B4_2011 -1.3 -5.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2526 -1.3 -8.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1668 -1.3 -4.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2004 -1.3 -1.7 putative membrane protein compare
Pf1N1B4_350 -1.3 -5.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1315 -1.3 -4.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1067 -1.3 -4.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4472 -1.3 -2.2 Transcriptional regulator, ArsR family compare
Pf1N1B4_2282 -1.3 -6.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3638 -1.3 -2.4 FIG00955434: hypothetical protein compare
Pf1N1B4_1307 -1.3 -1.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3506 -1.3 -4.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1159 -1.2 -2.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_2792 -1.2 -2.9 FIG00953454: hypothetical protein compare
Pf1N1B4_1003 -1.2 -2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_165 -1.2 -2.0 FIG00638667: hypothetical protein compare
Pf1N1B4_1057 -1.2 -1.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2272 -1.2 -2.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2885 -1.2 -3.7 Paraquat-inducible protein A compare
Pf1N1B4_1234 -1.2 -2.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1235 -1.2 -3.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_5611 -1.2 -1.4 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_2879 -1.2 -3.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1434 -1.2 -4.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1408 -1.2 -2.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_4921 -1.2 -2.0 Haloacid dehalogenase, type II compare
Pf1N1B4_3466 -1.2 -2.4 FIG00955605: hypothetical protein compare
Pf1N1B4_522 -1.1 -2.6 HlyD family secretion protein compare
Pf1N1B4_2884 -1.1 -3.0 Paraquat-inducible protein A compare
Pf1N1B4_6041 -1.1 -1.0 Carbon storage regulator compare
Pf1N1B4_476 -1.1 -2.1 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_722 -1.1 -1.9 SAM-dependent methyltransferases compare
Pf1N1B4_3331 -1.1 -2.0 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_2794 -1.1 -1.7 FIG00953595: hypothetical protein compare
Pf1N1B4_974 -1.1 -2.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_5747 -1.1 -1.7 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_1827 -1.1 -2.5 FIG00953482: hypothetical protein compare
Pf1N1B4_4860 -1.1 -2.6 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_4039 -1.1 -3.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2010 -1.1 -3.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_4489 -1.1 -2.1 Transcriptional regulator, LuxR family compare
Pf1N1B4_1625 -1.1 -2.6 FIG00956267: hypothetical protein compare
Pf1N1B4_3501 -1.1 -3.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_3981 -1.1 -1.5 Predicted carboxypeptidase compare
Pf1N1B4_567 -1.1 -2.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_5039 -1.1 -3.2 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_1636 -1.1 -1.6 FIG00954739: hypothetical protein compare
Pf1N1B4_4918 -1.1 -1.4 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_4218 -1.1 -2.0 Multidrug resistance protein A compare
Pf1N1B4_2035 -1.1 -3.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_4317 -1.1 -1.8 DNA/RNA non-specific endonuclease compare
Pf1N1B4_652 -1.0 -5.2 Sensory box histidine kinase compare
Pf1N1B4_2412 -1.0 -1.9 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_2145 -1.0 -0.7 Translation initiation inhibitor compare
Pf1N1B4_4699 -1.0 -1.9 Multidrug translocase MdfA compare
Pf1N1B4_2167 -1.0 -3.0 Ammonium transporter compare
Pf1N1B4_3906 -1.0 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2859 -1.0 -6.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3153 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_5519 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_821 -1.0 -4.4 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_4729 -1.0 -2.1 Hemolysin-type calcium-binding region compare
Pf1N1B4_5302 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_291 -1.0 -3.8 Major outer membrane lipoprotein I compare
Pf1N1B4_5105 -1.0 -1.6 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_1617 -1.0 -4.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_609 -1.0 -2.7 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_4845 -1.0 -2.8 Xylulose kinase (EC 2.7.1.17) compare
Pf1N1B4_3537 -1.0 -2.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_4382 -1.0 -4.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf1N1B4_615 -1.0 -1.7 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_4960 -1.0 -1.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_2949 -1.0 -1.3 FIG00956396: hypothetical protein compare
Pf1N1B4_4517 -0.9 -1.5 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_844 -0.9 -2.5 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf1N1B4_4413 -0.9 -2.1 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate compare
Pf1N1B4_1542 -0.9 -1.9 Type IV pilus biogenesis protein PilN compare
Pf1N1B4_4614 -0.9 -2.5 Membrane alanine aminopeptidase N (EC 3.4.11.2) compare
Pf1N1B4_2396 -0.9 -2.7 Transcriptional regulator, ArsR family / Methyltransferase fusion compare
Pf1N1B4_63 -0.9 -1.4 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_2390 -0.9 -1.7 probable membrane protein NMA1176 compare
Pf1N1B4_3717 -0.9 -2.6 Permeases of the major facilitator superfamily compare
Pf1N1B4_2499 -0.9 -4.1 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_867 -0.9 -1.6 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_2417 -0.9 -1.3 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_4065 -0.9 -3.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2009 -0.9 -2.5 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2432 -0.9 -1.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_2337 -0.9 -2.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4831 -0.9 -0.8 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_228 -0.9 -1.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_5438 -0.9 -3.1 hypothetical protein compare
Pf1N1B4_2184 -0.9 -3.2 Autolysis response regulater LytR compare
Pf1N1B4_5577 -0.9 -2.5 twitching motility protein PilG compare
Pf1N1B4_2335 -0.9 -3.0 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_1584 -0.9 -1.3 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_1967 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_2776 -0.9 -1.3 Transcriptional regulator, GntR family compare
Pf1N1B4_2280 -0.9 -3.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3195 -0.9 -3.6 hydrolase, putative compare
Pf1N1B4_3993 -0.9 -2.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_698 -0.9 -2.8 Rrf2-linked NADH-flavin reductase compare
Pf1N1B4_5506 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_4107 -0.9 -1.4 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_4176 -0.9 -1.9 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_614 -0.9 -2.2 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_3296 -0.8 -2.2 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_4156 -0.8 -1.2 putative secreted protein compare
Pf1N1B4_12 -0.8 -2.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2384 -0.8 -4.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_3549 -0.8 -1.3 YciL protein compare
Pf1N1B4_1221 -0.8 -2.5 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase compare
Pf1N1B4_3782 -0.8 -1.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_5722 -0.8 -1.2 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrite across organisms