Experiment set11IT040 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrite 0.1mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_526 +1.5 3.8 Undecaprenyl pyrophosphate synthase compare
Pf1N1B4_527 +1.5 5.3 Cytosine/purine/uracil/thiamine/allantoin permease family protein compare
Pf1N1B4_695 +1.4 3.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_909 +1.2 3.0 Ketosteroid isomerase-related protein compare
Pf1N1B4_3111 +1.2 1.8 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_5675 +1.2 3.6 hypothetical protein compare
Pf1N1B4_696 +1.2 5.0 Acetolactate synthase, large subunit (EC 2.2.1.6) compare
Pf1N1B4_1463 +1.2 7.2 hypothetical protein compare
Pf1N1B4_4212 +1.2 4.3 Gfa-like protein compare
Pf1N1B4_2322 +1.2 4.0 FIG015547: peptidase, M16 family compare
Pf1N1B4_6050 +1.1 3.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1246 +1.1 2.8 FIG00954047: hypothetical protein compare
Pf1N1B4_1118 +1.0 2.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4429 +1.0 1.6 No significant database matches compare
Pf1N1B4_883 +1.0 1.6 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_4250 +1.0 2.0 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_4470 +0.9 1.6 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_5275 +0.9 2.3 hypothetical protein compare
Pf1N1B4_5574 +0.9 3.7 hypothetical protein compare
Pf1N1B4_187 +0.9 5.0 Threonine and homoserine efflux system compare
Pf1N1B4_4357 +0.9 1.9 Putrescine utilization regulator compare
Pf1N1B4_5463 +0.9 1.2 hypothetical protein compare
Pf1N1B4_4482 +0.9 2.2 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_3985 +0.9 2.5 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_758 +0.9 3.0 Bacterioferritin compare
Pf1N1B4_1704 +0.9 2.4 hypothetical protein compare
Pf1N1B4_1059 +0.8 2.3 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_4736 +0.8 3.0 Fap amyloid fibril minor component compare
Pf1N1B4_4201 +0.8 1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_558 +0.8 4.9 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf1N1B4_4648 +0.8 1.6 transcriptional regulator, MerR family compare
Pf1N1B4_5430 +0.8 2.7 hypothetical protein compare
Pf1N1B4_5920 +0.8 2.0 Transcriptional regulator, AraC family compare
Pf1N1B4_4855 +0.8 1.2 Response regulator compare
Pf1N1B4_4587 +0.8 2.3 probable dioxygenase compare
Pf1N1B4_4828 +0.8 0.9 hypothetical protein compare
Pf1N1B4_2247 +0.8 1.7 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_4448 +0.8 2.2 COGs COG2343 compare
Pf1N1B4_3483 +0.8 2.9 Transcriptional regulatory protein PhoP compare
Pf1N1B4_2296 +0.8 3.1 FIG00350678: hypothetical protein compare
Pf1N1B4_3634 +0.8 2.1 CheW domain protein compare
Pf1N1B4_3489 +0.8 2.6 Protein sprT compare
Pf1N1B4_5294 +0.8 1.8 hypothetical protein compare
Pf1N1B4_2734 +0.8 1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_1461 +0.8 2.3 Protein fixF compare
Pf1N1B4_3613 +0.8 2.0 hypothetical protein compare
Pf1N1B4_3746 +0.7 3.0 ABC transporter permease protein compare
Pf1N1B4_3887 +0.7 1.9 CAAX amino terminal protease family protein compare
Pf1N1B4_5880 +0.7 1.9 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_5476 +0.7 1.5 hypothetical protein compare
Pf1N1B4_102 +0.7 2.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_3115 +0.7 3.8 RNA polymerase sigma factor RpoS compare
Pf1N1B4_3620 +0.7 1.8 Flagellar biosynthesis protein FliR compare
Pf1N1B4_407 +0.7 1.4 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_3403 +0.7 2.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_3485 +0.7 1.3 hypothetical protein compare
Pf1N1B4_3390 +0.7 1.6 RNA polymerase sigma factor RpoE compare
Pf1N1B4_5158 +0.7 1.9 Endoglucanase precursor (EC 3.2.1.4) compare
Pf1N1B4_1661 +0.7 2.8 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_2828 +0.7 1.7 FIG00953333: hypothetical protein compare
Pf1N1B4_483 +0.7 1.8 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_4318 +0.7 2.3 hypothetical protein compare
Pf1N1B4_1 +0.7 1.4 Colicin V production protein compare
Pf1N1B4_5072 +0.7 1.8 Glycerol-3-phosphate regulon repressor compare
Pf1N1B4_619 +0.7 1.5 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_3582 +0.7 1.2 C-methyltransferase compare
Pf1N1B4_5554 +0.7 1.5 hypothetical protein compare
Pf1N1B4_2154 +0.7 1.3 hypothetical protein compare
Pf1N1B4_3590 +0.7 3.7 hypothetical protein compare
Pf1N1B4_1979 +0.7 2.8 HflK protein compare
Pf1N1B4_5703 +0.7 2.3 FIG00961921: hypothetical protein compare
Pf1N1B4_5393 +0.7 1.2 hypothetical protein compare
Pf1N1B4_5917 +0.7 2.0 Multimeric flavodoxin WrbA compare
Pf1N1B4_4215 +0.7 3.0 Adenylate cyclase (EC 4.6.1.1) compare
Pf1N1B4_3351 +0.7 2.0 FIG00954302: hypothetical protein compare
Pf1N1B4_4177 +0.7 1.4 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_4745 +0.7 1.5 Transcriptional regulator, LysR family compare
Pf1N1B4_1514 +0.7 1.6 FIG022199: FAD-binding protein compare
Pf1N1B4_119 +0.7 2.7 Putative haemolysin/cytolysin secreted via TPS pathway compare
Pf1N1B4_4334 +0.7 1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_2442 +0.7 1.6 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_4355 +0.7 1.2 Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-) compare
Pf1N1B4_324 +0.7 1.2 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_1008 +0.7 0.8 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_359 +0.7 1.1 GGDEF domain protein compare
Pf1N1B4_5698 +0.7 2.5 Putative monooxygenase compare
Pf1N1B4_2733 +0.7 1.4 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_2484 +0.7 1.3 hypothetical protein compare
Pf1N1B4_4847 +0.7 1.9 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_345 +0.7 1.1 Integration host factor beta subunit compare
Pf1N1B4_2169 +0.7 1.8 FIG00953808: hypothetical protein compare
Pf1N1B4_3126 +0.7 1.7 Phage tail length tape-measure protein compare
Pf1N1B4_1049 +0.7 2.4 Glycosyl transferase, group 1 family protein compare
Pf1N1B4_4568 +0.7 1.3 FIG00793915: hypothetical protein compare
Pf1N1B4_2820 +0.6 1.9 FIG00953647: hypothetical protein compare
Pf1N1B4_2426 +0.6 2.3 FIG00953780: hypothetical protein compare
Pf1N1B4_1332 +0.6 1.5 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_756 +0.6 1.3 hypothetical protein compare
Pf1N1B4_1666 +0.6 2.6 C4-dicarboxylate transport transcriptional regulatory protein compare
Pf1N1B4_5930 +0.6 3.4 Exopolysaccharide production protein ExoZ compare
Pf1N1B4_5047 +0.6 1.3 Integral membrane protein TerC compare
Pf1N1B4_5552 +0.6 1.1 hypothetical protein compare
Pf1N1B4_4446 +0.6 1.4 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2621 +0.6 1.1 PspA/IM30 family protein compare
Pf1N1B4_6036 +0.6 1.9 FIG00953132: hypothetical protein compare
Pf1N1B4_4889 +0.6 2.6 Cystathionine beta-synthase (EC 4.2.1.22) compare
Pf1N1B4_3600 +0.6 2.6 Flagellar sensor histidine kinase FleS compare
Pf1N1B4_5018 +0.6 1.6 FIG00962345: hypothetical protein compare
Pf1N1B4_773 +0.6 2.6 ABC transporter for L-asparagine and L-glutamate, permease subunit 2 (from data) compare
Pf1N1B4_4118 +0.6 1.7 Cyn operon transcriptional activator compare
Pf1N1B4_2464 +0.6 1.7 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_2958 +0.6 1.4 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_4771 +0.6 1.8 Probable transmembrane protein compare
Pf1N1B4_1458 +0.6 3.4 Probable transcription regulator Mig-14 compare
Pf1N1B4_5824 +0.6 1.8 Na(+) H(+) antiporter subunit D compare
Pf1N1B4_4422 +0.6 0.9 ABC transporter amino acid-binding protein compare
Pf1N1B4_516 +0.6 1.3 Sensor histidine kinase compare
Pf1N1B4_5051 +0.6 1.4 Sensor protein DegS compare
Pf1N1B4_1266 +0.6 1.9 hypothetical protein compare
Pf1N1B4_5141 +0.6 2.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_1465 +0.6 4.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_4187 +0.6 1.7 Probable signal peptide protein compare
Pf1N1B4_5022 +0.6 1.5 hypothetical protein compare
Pf1N1B4_1730 +0.6 1.4 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_3362 +0.6 1.4 Multidrug resistance protein B compare
Pf1N1B4_3966 +0.6 1.8 serine/threonine protein kinase compare
Pf1N1B4_5112 +0.6 1.4 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_1914 +0.6 2.5 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_629 +0.6 1.6 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_4764 +0.6 1.7 2-ketogluconate transporter compare
Pf1N1B4_4123 +0.6 1.1 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_5334 +0.6 1.6 hypothetical protein compare
Pf1N1B4_4374 +0.6 2.2 hypothetical protein compare
Pf1N1B4_412 +0.6 1.8 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_2096 +0.6 1.4 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_733 +0.6 0.9 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_2537 +0.6 1.3 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf1N1B4_1422 +0.6 1.5 hypothetical protein compare
Pf1N1B4_448 +0.6 1.0 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_3278 +0.6 1.3 putative exported protein compare
Pf1N1B4_4778 +0.6 2.0 NADH pyrophosphatase (EC 3.6.1.22) compare
Pf1N1B4_1154 +0.6 1.8 FIG00957702: hypothetical protein compare
Pf1N1B4_4354 +0.6 2.1 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) compare
Pf1N1B4_4515 +0.6 2.4 Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) compare
Pf1N1B4_3917 +0.6 1.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3091 +0.6 2.3 Membrane-associated zinc metalloprotease compare
Pf1N1B4_1496 +0.6 2.3 Na(+)/H(+) antiporter compare
Pf1N1B4_3997 +0.6 2.1 Uncharacterized protein YtfM precursor compare
Pf1N1B4_2706 +0.6 1.4 FIG00954871: hypothetical protein compare
Pf1N1B4_5801 +0.6 1.6 hypothetical protein compare
Pf1N1B4_1819 +0.6 1.1 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_249 +0.6 2.1 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) compare
Pf1N1B4_3789 +0.5 1.4 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_188 +0.5 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5595 +0.5 2.3 Phenylacetic acid-specific porin; hydroxycinnamate specific porine compare
Pf1N1B4_5692 +0.5 2.2 Nitrate/nitrite transporter compare
Pf1N1B4_4305 +0.5 1.3 PUTATIVE METHYLTRANSFERASE compare
Pf1N1B4_4673 +0.5 1.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_1128 +0.5 1.7 hypothetical protein compare
Pf1N1B4_3591 +0.5 2.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_2840 +0.5 1.8 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1358 +0.5 1.5 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_3818 +0.5 1.5 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_2413 +0.5 1.8 Permeases of the major facilitator superfamily compare
Pf1N1B4_3546 +0.5 1.0 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_3713 +0.5 1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_3531 +0.5 1.9 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_1456 +0.5 2.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_1301 +0.5 1.2 secreted protein Hcp compare
Pf1N1B4_4787 +0.5 1.4 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf1N1B4_5921 +0.5 1.8 Pirin compare
Pf1N1B4_1806 +0.5 1.3 FIG00953743: hypothetical protein compare
Pf1N1B4_5067 +0.5 1.4 PUTATIVE TRANSFERASE PROTEIN( EC:2.- ) compare
Pf1N1B4_5464 +0.5 1.4 Cointegrate resolution protein T compare
Pf1N1B4_4623 +0.5 2.2 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) compare
Pf1N1B4_5855 +0.5 2.5 Putrescine importer compare
Pf1N1B4_846 +0.5 0.6 hypothetical protein compare
Pf1N1B4_5680 +0.5 1.5 DNA polymerase-like protein PA0670 compare
Pf1N1B4_1242 +0.5 2.2 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf1N1B4_3127 +0.5 1.4 Phage tail/DNA circulation protein compare
Pf1N1B4_1958 +0.5 0.6 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4806 +0.5 1.4 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_5354 +0.5 1.7 hypothetical protein compare
Pf1N1B4_3360 +0.5 1.9 FIG00953701: hypothetical protein compare
Pf1N1B4_5912 +0.5 1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_612 +0.5 2.0 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_3234 +0.5 0.9 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf1N1B4_2969 +0.5 3.8 ATPase, AFG1 family compare
Pf1N1B4_1750 +0.5 0.9 Death on curing protein, Doc toxin compare
Pf1N1B4_2178 +0.5 0.8 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_3408 +0.5 1.0 Transcriptional regulator, AraC family compare
Pf1N1B4_3625 +0.5 1.2 Flagellar synthesis regulator FleN compare
Pf1N1B4_2130 +0.5 2.4 FIG00953403: hypothetical protein compare
Pf1N1B4_4700 +0.5 1.3 FIG00956898: hypothetical protein compare
Pf1N1B4_248 +0.5 1.5 EAL-domain protein compare
Pf1N1B4_5695 +0.5 1.6 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_5684 +0.5 1.9 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_4007 +0.5 1.3 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_3693 +0.5 2.1 Pirin compare
Pf1N1B4_3601 +0.5 1.9 Flagellar regulatory protein FleQ compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrite across organisms