Experiment set11IT040 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Esculin Monohydrate 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -4.4 -4.3 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4340 -3.8 -9.4 phosphomethylpyrimidine kinase, putative compare
Psyr_1544 -3.8 -4.4 SirA-like protein compare
Psyr_1613 -3.0 -5.3 septum site-determining protein MinC compare
Psyr_4740 -2.9 -7.0 thiazole-phosphate synthase compare
Psyr_4203 -2.7 -3.1 SsrA-binding protein compare
Psyr_3008 -2.7 -7.6 Undecaprenyl-diphosphatase compare
Psyr_4683 -2.6 -4.9 dethiobiotin synthase compare
Psyr_0849 -2.6 -10.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4341 -2.5 -7.3 thiamine-phosphate diphosphorylase compare
Psyr_4687 -2.4 -7.9 biotin synthase compare
Psyr_4627 -2.4 -2.6 dimethyladenosine transferase compare
Psyr_4580 -2.3 -3.1 anthranilate phosphoribosyltransferase compare
Psyr_4686 -2.3 -6.4 8-amino-7-oxononanoate synthase compare
Psyr_1663 -2.2 -3.5 phosphoribosylanthranilate isomerase compare
Psyr_0383 -2.2 -2.9 Twin-arginine translocation protein TatB compare
Psyr_4091 -2.1 -4.2 8-oxo-dGTPase compare
Psyr_0917 -2.0 -10.1 ABC-2 compare
Psyr_0454 -2.0 -5.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0918 -1.9 -11.3 ABC transporter compare
Psyr_1907 -1.9 -3.8 GTP cyclohydrolase I compare
Psyr_0574 -1.8 -5.4 protease FtsH subunit HflK compare
Psyr_2921 -1.7 -3.7 ADP-ribosylglycohydrolase compare
Psyr_0475 -1.7 -3.2 Protein of unknown function YGGT compare
Psyr_3581 -1.7 -6.4 ribosomal large subunit pseudouridine synthase B compare
Psyr_0259 -1.7 -4.1 Osmolarity sensor protein envZ compare
Psyr_2347 -1.6 -2.4 hypothetical protein compare
Psyr_1408 -1.5 -3.6 Holliday junction endonuclease RuvC compare
Psyr_1419 -1.5 -3.3 preQ(0) biosynthesis protein QueC compare
Psyr_1410 -1.5 -4.1 Holliday junction DNA helicase RuvB compare
Psyr_4884 -1.5 -4.6 Rhodanese-like protein compare
Psyr_5132 -1.5 -3.1 Glucose-inhibited division protein A subfamily compare
Psyr_0282 -1.4 -4.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4684 -1.4 -3.1 biotin synthesis protein BioC compare
Psyr_1751 -1.4 -3.8 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0565 -1.4 -6.0 Protein of unknown function UPF0126 compare
Psyr_0255 -1.4 -2.5 glutamate-cysteine ligase compare
Psyr_0826 -1.3 -6.1 glucose-6-phosphate isomerase compare
Psyr_2346 -1.3 -4.3 conserved hypothetical protein compare
Psyr_2668 -1.3 -3.9 Helix-turn-helix, Fis-type compare
Psyr_4991 -1.3 -2.5 hypothetical protein compare
Psyr_0493 -1.3 -3.5 CheW-like protein compare
Psyr_1748 -1.2 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3287 -1.2 -2.0 DNA topoisomerase I compare
Psyr_3954 -1.2 -4.9 GTP-binding protein LepA compare
Psyr_1555 -1.2 -3.2 Cobyrinic acid a,c-diamide synthase compare
Psyr_4417 -1.2 -2.2 Ferredoxin--nitrite reductase compare
Psyr_1373 -1.2 -2.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4634 -1.2 -2.1 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3179 -1.2 -2.2 DNA translocase FtsK compare
Psyr_3806 -1.1 -4.6 hypothetical protein compare
Psyr_1667 -1.1 -3.9 Colicin V production protein compare
Psyr_5133 -1.1 -3.4 tRNA modification GTPase trmE compare
Psyr_3620 -1.1 -1.9 hypothetical protein compare
Psyr_3208 -1.1 -2.1 NADH dehydrogenase subunit M compare
Psyr_3808 -1.1 -1.0 hypothetical protein compare
Psyr_1418 -1.1 -2.7 Radical SAM compare
Psyr_4822 -1.1 -3.3 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_1975 -1.1 -3.0 Integrase, catalytic region compare
Psyr_2854 -1.1 -3.0 conserved hypothetical protein compare
Psyr_0487 -1.1 -2.3 glutathione synthase compare
Psyr_1556 -1.1 -1.6 hypothetical protein compare
Psyr_5135 -1.1 -1.9 Protein of unknown function DUF37 compare
Psyr_0303 -1.0 -2.8 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_3640 -1.0 -1.9 conserved hypothetical protein compare
Psyr_2345 -1.0 -4.1 ea59 protein compare
Psyr_1931 -1.0 -3.9 hypothetical protein compare
Psyr_0575 -1.0 -2.7 protease FtsH subunit HflC compare
Psyr_1930 -1.0 -2.6 hypothetical protein compare
Psyr_2462 -1.0 -3.5 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0281 -1.0 -2.3 ABC transporter compare
Psyr_4754 -1.0 -2.1 16S rRNA m(2)G-966 methyltransferase compare
Psyr_1227 -1.0 -2.6 Queuosine biosynthesis protein compare
Psyr_4089 -1.0 -4.1 PAS compare
Psyr_1864 -1.0 -3.0 spermidine synthase compare
Psyr_0464 -1.0 -1.7 hypothetical protein compare
Psyr_0215 -1.0 -6.4 Exodeoxyribonuclease III xth compare
Psyr_2847 -1.0 -2.2 hypothetical protein compare
Psyr_4808 -0.9 -1.0 conserved hypothetical protein compare
Psyr_1935 -0.9 -3.5 Protein of unknown function DUF796 compare
Psyr_3807 -0.9 -4.1 hypothetical protein compare
Psyr_1505 -0.9 -2.6 Protein of unknown function DUF156 compare
Psyr_2899 -0.9 -2.9 conserved hypothetical protein compare
Psyr_0579 -0.9 -6.4 RNAse R compare
Psyr_0137 -0.9 -1.8 outer membrane transport energization protein ExbD compare
Psyr_2398 -0.9 -2.0 ABC transporter compare
Psyr_3547 -0.9 -3.6 transcriptional regulator, TetR family compare
Psyr_1404 -0.9 -5.4 Ferritin and Dps compare
Psyr_2824 -0.9 -2.9 conserved hypothetical protein compare
Psyr_RNA61 -0.9 -2.5 tRNA-Gly compare
Psyr_0571 -0.9 -2.5 tRNA isopentenyltransferase compare
Psyr_3805 -0.9 -1.9 hypothetical protein compare
Psyr_4194 -0.8 -3.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3933 -0.8 -1.7 conserved hypothetical protein compare
Psyr_1460 -0.8 -2.8 hypothetical protein compare
Psyr_1455 -0.8 -3.0 conserved hypothetical protein compare
Psyr_2664 -0.8 -3.8 hypothetical protein compare
Psyr_4581 -0.8 -2.2 anthranilate synthase, component II compare
Psyr_2112 -0.8 -0.9 Protein with unknown function DUF469 compare
Psyr_2848 -0.8 -2.7 hypothetical protein compare
Psyr_3090 -0.8 -2.1 hypothetical protein compare
Psyr_3728 -0.8 -3.1 hypothetical protein compare
Psyr_1371 -0.8 -4.2 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_1919 -0.8 -3.5 hypothetical protein compare
Psyr_3013 -0.8 -1.6 magnesium chelatase subunit ChlD compare
Psyr_2980 -0.8 -2.1 UDP-glucose pyrophosphorylase compare
Psyr_4278 -0.8 -1.8 regulatory protein, LuxR compare
Psyr_2143 -0.8 -1.1 delta1-piperideine 2-carboxylate reductase compare
Psyr_0941 -0.8 -4.2 Conserved hypothetical protein 92 compare
Psyr_1268 -0.8 -3.4 extracellular solute-binding protein, family 3:SLT compare
Psyr_1350 -0.8 -1.8 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_3675 -0.8 -1.6 adenosylcobinamide kinase compare
Psyr_0034 -0.8 -1.2 tryptophan synthase, beta chain compare
Psyr_3282 -0.8 -2.6 transcriptional regulator, TetR family compare
Psyr_0919 -0.8 -4.9 Chromosome segregation ATPase-like protein compare
Psyr_2476 -0.8 -1.6 Exodeoxyribonuclease III compare
Psyr_5072 -0.8 -1.1 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3093 -0.7 -2.2 conserved hypothetical protein compare
Psyr_2251 -0.7 -1.7 Phosphonate metabolism PhnG compare
Psyr_5130 -0.7 -4.3 chromosome segregation ATPase compare
Psyr_2180 -0.7 -2.0 transcriptional regulator, LysR family compare
Psyr_3906 -0.7 -1.4 regulatory protein, DeoR compare
Psyr_4454 -0.7 -2.2 HupE/UreJ protein compare
Psyr_0928 -0.7 -5.0 hypothetical protein compare
Psyr_1357 -0.7 -2.5 RNase HII compare
Psyr_3476 -0.7 -1.5 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_0202 -0.7 -3.6 transcriptional regulator, LysR family compare
Psyr_2641 -0.7 -1.2 hypothetical protein compare
Psyr_0549 -0.7 -1.4 Metallophosphoesterase compare
Psyr_1843 -0.7 -2.0 Protein of unknown function DUF1311 compare
Psyr_3616 -0.7 -4.2 Heat shock protein, Metallo peptidase, MEROPS family M48B compare
Psyr_4362 -0.7 -1.7 Rare lipoprotein A compare
Psyr_2591 -0.7 -2.9 transport system permease protein compare
Psyr_3677 -0.7 -1.9 Aminotransferase, class I and II compare
Psyr_2769 -0.7 -2.1 conserved hypothetical protein compare
Psyr_1702 -0.7 -3.4 regulatory protein, LuxR compare
Psyr_0680 -0.7 -2.1 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_0927 -0.7 -1.9 hypothetical protein compare
Psyr_3585 -0.7 -1.7 Sua5/YciO/YrdC/YwlC compare
Psyr_4309 -0.7 -3.3 hypothetical protein compare
Psyr_2823 -0.7 -0.9 hypothetical protein compare
Psyr_3450 -0.7 -2.2 Hpt compare
Psyr_1989 -0.7 -2.9 galactonate dehydratase compare
Psyr_0373 -0.7 -1.0 CDS compare
Psyr_1094 -0.7 -1.5 cold-shock DNA-binding protein family compare
Psyr_4833 -0.7 -1.9 histidine ammonia-lyase compare
Psyr_3127 -0.7 -2.2 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3040 -0.7 -2.0 conserved hypothetical protein compare
Psyr_4112 -0.7 -4.3 Protein of unknown function UPF0011 compare
Psyr_4989 -0.7 -1.7 hypothetical protein compare
Psyr_0394 -0.7 -2.5 Heat shock protein HslU compare
Psyr_2844 -0.7 -2.0 hypothetical protein compare
Psyr_3120 -0.7 -1.9 D-glucarate dehydratase compare
Psyr_0920 -0.7 -5.5 Glycosyl transferase, group 1 compare
Psyr_3089 -0.6 -5.1 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_0490 -0.6 -2.7 CheW-like protein compare
Psyr_2855 -0.6 -1.9 methionine synthase (B12-independent) compare
Psyr_0916 -0.6 -4.5 GDP-mannose 4,6-dehydratase compare
Psyr_0199 -0.6 -2.2 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_2770 -0.6 -3.2 tail fiber domain protein compare
Psyr_2392 -0.6 -2.7 conserved hypothetical protein compare
Psyr_2842 -0.6 -3.3 hypothetical protein compare
Psyr_5065 -0.6 -3.7 ATP-dependent DNA helicase UvrD compare
Psyr_3284 -0.6 -2.0 SOS cell division inhibitor SulA compare
Psyr_0550 -0.6 -2.7 Protein of unknown function UPF0227 compare
Psyr_4566 -0.6 -3.9 Peptidase M23B compare
Psyr_3626 -0.6 -2.6 transcriptional regulator, MarR family compare
Psyr_0580 -0.6 -1.8 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_2351 -0.6 -1.9 tRNA synthetase, class-II (G, H, P and S) compare
Psyr_4136 -0.6 -1.5 BolA-like protein compare
Psyr_2642 -0.6 -2.3 hypothetical protein compare
Psyr_3199 -0.6 -1.5 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0817 -0.6 -2.0 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_2285 -0.6 -0.9 Twin-arginine translocation pathway signal compare
Psyr_1198 -0.6 -1.5 type III secretion protein HrpF compare
Psyr_2973 -0.6 -1.5 Glyoxalase I compare
Psyr_0923 -0.6 -2.4 hypothetical protein compare
Psyr_3555 -0.6 -0.9 aspartate kinase compare
Psyr_4609 -0.6 -4.4 anthranilate synthase, component I compare
Psyr_4351 -0.6 -2.3 conserved domain protein compare
Psyr_1832 -0.6 -1.1 Exonuclease compare
Psyr_3854 -0.6 -0.9 OmpA/MotB compare
Psyr_3460 -0.6 -2.3 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_2071 -0.6 -1.1 outer membrane lipoprotein OprI compare
Psyr_2126 -0.6 -2.0 4-carboxymuconolactone decarboxylase compare
Psyr_0437 -0.6 -1.3 acyl carrier protein, putative compare
Psyr_2607 -0.6 -2.5 regulatory protein, LuxR compare
Psyr_3952 -0.6 -1.8 conserved hypothetical protein compare
Psyr_2837 -0.6 -3.6 hypothetical protein compare
Psyr_0498 -0.6 -1.7 Protein of unknown function DUF1445 compare
Psyr_1862 -0.6 -2.4 Zinc transporter ZIP compare
Psyr_2738 -0.6 -2.1 regulatory protein, LysR compare
Psyr_4519 -0.6 -3.6 General substrate transporter:Major facilitator superfamily compare
Psyr_1953 -0.6 -1.1 conserved hypothetical protein compare
Psyr_2455 -0.6 -2.4 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal compare
Psyr_2471 -0.6 -1.1 hydroxymethylglutaryl-CoA lyase compare
Psyr_2232 -0.6 -2.3 Major facilitator superfamily compare
Psyr_2563 -0.6 -1.9 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_1190 -0.6 -2.4 type III transcriptional regulator HrpR compare
Psyr_3958 -0.6 -3.7 RNA polymerase, sigma-24 subunit, RpoE compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Esculin Monohydrate across organisms