Experiment set11IT039 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5224 -4.4 -4.4 tRNA-Arg-CCT compare
Pf1N1B4_2272 -4.1 -6.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1611 -4.0 -7.6 Nitrogen regulation protein NR(I) compare
Pf1N1B4_4038 -3.9 -4.6 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_58 -3.8 -9.1 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2874 -3.7 -3.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1408 -3.4 -4.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1533 -3.3 -13.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_4035 -3.2 -4.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_6 -3.2 -5.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1315 -3.2 -8.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2880 -3.1 -14.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1534 -3.1 -18.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3906 -3.0 -5.0 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1624 -2.9 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1610 -2.9 -4.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2545 -2.9 -14.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_3081 -2.8 -18.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2010 -2.8 -8.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_5926 -2.8 -11.9 hypothetical protein compare
Pf1N1B4_2893 -2.8 -7.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_974 -2.8 -5.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4041 -2.7 -4.1 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_1057 -2.7 -3.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4030 -2.7 -3.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1627 -2.7 -5.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_4028 -2.6 -4.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1565 -2.6 -6.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5925 -2.6 -9.9 hypothetical protein compare
Pf1N1B4_2303 -2.6 -10.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1831 -2.6 -10.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2009 -2.5 -7.0 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2548 -2.5 -6.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_5991 -2.5 -3.5 Transcriptional regulator, AraC family compare
Pf1N1B4_1307 -2.5 -2.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2526 -2.5 -13.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_15 -2.5 -4.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_742 -2.5 -8.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2858 -2.4 -10.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1434 -2.4 -6.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2338 -2.4 -8.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1317 -2.3 -4.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_5924 -2.3 -7.8 hypothetical protein compare
Pf1N1B4_762 -2.3 -6.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2380 -2.3 -11.1 Cytochrome B561 compare
Pf1N1B4_1830 -2.2 -8.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2850 -2.2 -8.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1626 -2.2 -8.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3518 -2.2 -2.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2337 -2.2 -5.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3506 -2.1 -6.0 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_5666 -2.1 -2.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2011 -2.1 -8.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5972 -2.1 -3.4 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_2384 -2.0 -8.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2549 -2.0 -6.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2282 -2.0 -8.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2005 -2.0 -2.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4065 -1.9 -6.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2381 -1.9 -9.2 Protein yceI precursor compare
Pf1N1B4_821 -1.9 -7.8 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_3812 -1.9 -8.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2547 -1.9 -3.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_4029 -1.8 -3.4 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3011 -1.8 -2.7 Tyrosine recombinase XerD compare
Pf1N1B4_5665 -1.8 -4.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_350 -1.8 -5.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3296 -1.8 -4.8 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_4835 -1.8 -2.0 Carbon starvation protein A compare
Pf1N1B4_1617 -1.8 -6.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2167 -1.7 -4.9 Ammonium transporter compare
Pf1N1B4_847 -1.7 -5.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2280 -1.7 -6.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5289 -1.7 -3.2 hypothetical protein compare
Pf1N1B4_2879 -1.7 -5.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2105 -1.7 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1067 -1.6 -3.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2859 -1.6 -9.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2878 -1.6 -6.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3038 -1.6 -5.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4039 -1.6 -5.0 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1906 -1.6 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2885 -1.6 -4.4 Paraquat-inducible protein A compare
Pf1N1B4_2886 -1.5 -7.6 Paraquat-inducible protein B compare
Pf1N1B4_3833 -1.5 -5.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1535 -1.5 -3.1 hypothetical protein compare
Pf1N1B4_2501 -1.5 -7.6 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf1N1B4_1234 -1.5 -3.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2112 -1.5 -9.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3498 -1.5 -3.0 FIG00953240: hypothetical protein compare
Pf1N1B4_899 -1.5 -2.4 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_12 -1.4 -4.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_600 -1.4 -6.1 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_5927 -1.4 -12.2 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_3143 -1.4 -3.5 RecA protein compare
Pf1N1B4_3153 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_5724 -1.4 -3.1 High-affinity iron permease compare
Pf1N1B4_4040 -1.4 -2.1 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_751 -1.4 -1.8 hypothetical protein compare
Pf1N1B4_644 -1.4 -2.4 Cold shock protein CspC compare
Pf1N1B4_3742 -1.4 -1.7 Oxidoreductase, zinc-binding compare
Pf1N1B4_1750 -1.3 -2.1 Death on curing protein, Doc toxin compare
Pf1N1B4_1668 -1.3 -3.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2334 -1.3 -3.8 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_1024 -1.3 -3.5 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_603 -1.3 -3.4 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2713 -1.2 -2.1 FIG00955339: hypothetical protein compare
Pf1N1B4_1619 -1.2 -6.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_602 -1.2 -2.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_4422 -1.2 -2.5 ABC transporter amino acid-binding protein compare
Pf1N1B4_138 -1.2 -1.7 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_1614 -1.2 -2.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_717 -1.2 -4.9 Iron-regulated protein A precursor compare
Pf1N1B4_5833 -1.2 -2.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_716 -1.2 -3.0 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_5219 -1.2 -2.3 tRNA-Gly-CCC compare
Pf1N1B4_2037 -1.2 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_3350 -1.2 -1.7 FIG00954807: hypothetical protein compare
Pf1N1B4_2411 -1.2 -2.6 FIG00953568: hypothetical protein compare
Pf1N1B4_715 -1.2 -4.4 Iron-regulated protein A precursor compare
Pf1N1B4_5720 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_4969 -1.1 -2.0 FIG00956189: hypothetical protein compare
Pf1N1B4_4299 -1.1 -2.2 sensor histidine kinase compare
Pf1N1B4_538 -1.1 -2.7 hypothetical protein compare
Pf1N1B4_5745 -1.1 -1.8 FIG139928: Putative protease compare
Pf1N1B4_784 -1.1 -6.2 Transcriptional activator MetR conserved
Pf1N1B4_898 -1.1 -5.3 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_609 -1.1 -3.4 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_1781 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_718 -1.1 -4.3 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_6050 -1.1 -1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3069 -1.1 -2.1 FIG00954614: hypothetical protein compare
Pf1N1B4_1554 -1.1 -5.1 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_846 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_175 -1.1 -2.2 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1870 -1.1 -2.4 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_4603 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_3078 -1.1 -2.3 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_4569 -1.1 -2.5 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_3396 -1.1 -2.2 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_2917 -1.0 -5.3 FIG140336: TPR domain protein compare
Pf1N1B4_1236 -1.0 -3.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_327 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_1625 -1.0 -2.4 FIG00956267: hypothetical protein compare
Pf1N1B4_5888 -1.0 -2.4 probable polysaccharide biosynthesis protein compare
Pf1N1B4_5560 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_688 -1.0 -1.6 FIG00955483: hypothetical protein compare
Pf1N1B4_4285 -1.0 -1.7 Inositol transport system sugar-binding protein compare
Pf1N1B4_5043 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_6041 -1.0 -1.5 Carbon storage regulator compare
Pf1N1B4_4678 -1.0 -3.8 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_5383 -1.0 -5.7 hypothetical protein compare
Pf1N1B4_3334 -1.0 -3.3 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_2499 -1.0 -4.9 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_2071 -1.0 -1.7 Protein phosphatase ImpM compare
Pf1N1B4_1558 -1.0 -2.5 Transcriptional regulator PhaD compare
Pf1N1B4_2736 -1.0 -2.6 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_2225 -1.0 -6.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_3468 -1.0 -1.9 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_5708 -1.0 -0.8 Transcriptional regulator, TetR family compare
Pf1N1B4_1042 -1.0 -1.9 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_556 -1.0 -2.4 Gluconate permease compare
Pf1N1B4_2456 -1.0 -2.2 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_475 -1.0 -2.8 ABC-type multidrug transport system, permease component compare
Pf1N1B4_2503 -0.9 -5.3 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_2421 -0.9 -2.3 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_623 -0.9 -1.7 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3713 -0.9 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_197 -0.9 -1.4 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_228 -0.9 -1.7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_3531 -0.9 -2.6 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_1958 -0.9 -1.6 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2776 -0.9 -2.2 Transcriptional regulator, GntR family compare
Pf1N1B4_5659 -0.9 -6.2 NfuA Fe-S protein maturation compare
Pf1N1B4_3176 -0.9 -3.4 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_5330 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_2884 -0.9 -2.6 Paraquat-inducible protein A compare
Pf1N1B4_5439 -0.9 -3.0 hypothetical protein compare
Pf1N1B4_4685 -0.9 -3.7 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) compare
Pf1N1B4_3638 -0.9 -2.8 FIG00955434: hypothetical protein compare
Pf1N1B4_2036 -0.9 -2.3 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_5356 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_4446 -0.9 -1.5 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2823 -0.9 -2.0 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_1566 -0.9 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1443 -0.9 -2.6 FIG074102: hypothetical protein compare
Pf1N1B4_476 -0.9 -2.0 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_3152 -0.9 -3.0 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_5639 -0.9 -2.9 D-serine deaminase (EC 4.3.1.18) compare
Pf1N1B4_1555 -0.9 -4.5 Polyhydroxyalkanoic acid synthase compare
Pf1N1B4_3006 -0.9 -4.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_1115 -0.9 -5.1 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_3354 -0.9 -2.6 FIG00954793: hypothetical protein compare
Pf1N1B4_3866 -0.9 -1.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_4533 -0.8 -1.8 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_267 -0.8 -1.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_230 -0.8 -2.1 FIG00953472: hypothetical protein compare
Pf1N1B4_5014 -0.8 -2.1 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_3467 -0.8 -2.0 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_2870 -0.8 -1.4 Regulator of competence-specific genes compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrite across organisms