Experiment set11IT038 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrite 1mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.7 -6.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2105 -4.7 -3.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2547 -4.6 -4.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1533 -4.1 -13.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2272 -3.9 -7.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1534 -3.9 -21.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4029 -3.9 -6.4 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2545 -3.5 -17.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1626 -3.5 -10.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1610 -3.3 -4.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1434 -3.2 -7.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2880 -3.2 -13.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_742 -3.0 -8.6 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1831 -3.0 -10.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2879 -3.0 -9.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_5666 -3.0 -3.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1408 -2.9 -4.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_58 -2.9 -7.1 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2893 -2.9 -7.8 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_3595 -2.9 -4.0 Flagellin protein FlaG compare
Pf1N1B4_1624 -2.9 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_4028 -2.8 -6.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_5224 -2.8 -3.9 tRNA-Arg-CCT compare
Pf1N1B4_4035 -2.7 -2.6 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_5665 -2.7 -6.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1611 -2.7 -4.5 Nitrogen regulation protein NR(I) compare
Pf1N1B4_5925 -2.7 -12.4 hypothetical protein compare
Pf1N1B4_1627 -2.7 -6.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_350 -2.7 -8.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_15 -2.7 -3.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2549 -2.7 -7.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_847 -2.7 -8.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2303 -2.7 -11.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3081 -2.7 -18.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1315 -2.6 -8.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2337 -2.6 -6.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1830 -2.6 -9.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2858 -2.6 -11.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1906 -2.5 -4.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2548 -2.5 -6.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2885 -2.5 -8.4 Paraquat-inducible protein A compare
Pf1N1B4_5926 -2.5 -11.1 hypothetical protein compare
Pf1N1B4_12 -2.4 -5.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_3518 -2.4 -2.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1067 -2.4 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1668 -2.4 -6.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2009 -2.4 -7.1 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1307 -2.4 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1006 -2.3 -6.6 Permease of the drug/metabolite transporter (DMT) superfamily conserved
Pf1N1B4_2380 -2.3 -12.4 Cytochrome B561 compare
Pf1N1B4_1619 -2.3 -11.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_4038 -2.3 -2.6 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1625 -2.3 -6.1 FIG00956267: hypothetical protein compare
Pf1N1B4_2526 -2.3 -13.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1617 -2.3 -7.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2878 -2.3 -9.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3833 -2.2 -9.2 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4039 -2.2 -5.6 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2850 -2.1 -8.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1105 -2.1 -3.6 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_2384 -2.1 -9.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_3501 -2.1 -6.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_2886 -2.1 -10.2 Paraquat-inducible protein B compare
Pf1N1B4_603 -2.1 -4.7 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2010 -2.0 -6.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2381 -2.0 -9.9 Protein yceI precursor compare
Pf1N1B4_4040 -2.0 -2.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3812 -2.0 -7.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_5619 -1.9 -2.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_4041 -1.9 -4.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_974 -1.9 -5.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_784 -1.9 -9.1 Transcriptional activator MetR conserved
Pf1N1B4_3506 -1.9 -6.8 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_4030 -1.9 -2.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1535 -1.9 -3.1 hypothetical protein compare
Pf1N1B4_3074 -1.8 -3.5 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_2917 -1.8 -6.7 FIG140336: TPR domain protein compare
Pf1N1B4_1565 -1.8 -3.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5275 -1.8 -2.0 hypothetical protein compare
Pf1N1B4_4065 -1.8 -6.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2282 -1.7 -8.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_5187 -1.7 -2.0 5S RNA compare
Pf1N1B4_5924 -1.7 -6.9 hypothetical protein compare
Pf1N1B4_2338 -1.7 -6.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_762 -1.7 -4.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1679 -1.7 -1.7 Membrane-fusion protein compare
Pf1N1B4_3284 -1.7 -4.7 Antitoxin 1 compare
Pf1N1B4_3325 -1.6 -2.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_2011 -1.6 -6.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_3815 -1.6 -5.1 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf1N1B4_2851 -1.6 -2.1 hypothetical protein compare
Pf1N1B4_2695 -1.6 -2.7 Rare lipoprotein A precursor compare
Pf1N1B4_2167 -1.6 -4.3 Ammonium transporter compare
Pf1N1B4_5560 -1.5 -2.5 hypothetical protein compare
Pf1N1B4_1057 -1.5 -1.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1566 -1.5 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2208 -1.5 -5.5 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1346 -1.5 -3.3 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_2227 -1.5 -2.5 FIG019278: hypothetical protein compare
Pf1N1B4_647 -1.5 -6.3 hypothetical protein compare
Pf1N1B4_3011 -1.5 -2.1 Tyrosine recombinase XerD compare
Pf1N1B4_1246 -1.5 -2.2 FIG00954047: hypothetical protein compare
Pf1N1B4_1235 -1.5 -5.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2859 -1.5 -8.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1234 -1.5 -3.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_5927 -1.5 -11.6 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_556 -1.5 -3.0 Gluconate permease compare
Pf1N1B4_2501 -1.4 -6.3 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf1N1B4_1115 -1.4 -8.1 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_1236 -1.4 -5.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_4857 -1.4 -4.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2682 -1.4 -2.3 Antiholin-like protein LrgA compare
Pf1N1B4_821 -1.4 -5.4 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_4523 -1.4 -1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3508 -1.4 -3.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_5650 -1.3 -3.3 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf1N1B4_648 -1.3 -11.2 Outer membrane porin, OprD family compare
Pf1N1B4_4299 -1.3 -3.1 sensor histidine kinase compare
Pf1N1B4_652 -1.3 -7.0 Sensory box histidine kinase compare
Pf1N1B4_1008 -1.3 -2.1 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_2225 -1.3 -7.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_2005 -1.3 -2.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4835 -1.3 -2.5 Carbon starvation protein A compare
Pf1N1B4_1785 -1.3 -2.2 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_1024 -1.2 -4.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_1317 -1.2 -2.4 Sensor histidine kinase/response regulator compare
Pf1N1B4_3153 -1.2 -2.2 hypothetical protein compare
Pf1N1B4_4960 -1.2 -2.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_3840 -1.2 -2.9 Response regulator NasT compare
Pf1N1B4_2112 -1.2 -7.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2503 -1.2 -7.0 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_3906 -1.2 -3.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4024 -1.2 -2.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3152 -1.1 -3.5 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_3800 -1.1 -3.4 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_4676 -1.1 -3.6 Alpha-amylase (EC 3.2.1.1) compare
Pf1N1B4_1180 -1.1 -2.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_2280 -1.1 -4.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1835 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_2721 -1.1 -5.8 AMP nucleosidase (EC 3.2.2.4) compare
Pf1N1B4_899 -1.1 -2.3 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_567 -1.1 -1.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_3143 -1.1 -2.5 RecA protein compare
Pf1N1B4_1003 -1.1 -1.6 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_372 -1.1 -3.1 UDP-galactose-lipid carrier transferase (EC 2.-.-.-) compare
Pf1N1B4_3605 -1.1 -1.7 Flagellar motor switch protein FliG compare
Pf1N1B4_4952 -1.1 -2.2 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_3816 -1.1 -4.8 FIG139976: hypothetical protein compare
Pf1N1B4_3831 -1.1 -5.0 CmpX compare
Pf1N1B4_2499 -1.0 -4.8 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_3632 -1.0 -3.2 Flagellar motor rotation protein MotB compare
Pf1N1B4_1474 -1.0 -3.7 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_3093 -1.0 -1.4 Outer membrane protein H precursor compare
Pf1N1B4_241 -1.0 -1.6 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_46 -1.0 -3.0 Copper resistance protein C precursor compare
Pf1N1B4_1492 -1.0 -1.3 FIG00959437: hypothetical protein compare
Pf1N1B4_4761 -1.0 -3.3 hypothetical protein compare
Pf1N1B4_3296 -1.0 -3.0 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_34 -1.0 -1.5 Xanthine permease compare
Pf1N1B4_72 -1.0 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_4587 -1.0 -2.4 probable dioxygenase compare
Pf1N1B4_4533 -1.0 -1.4 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_5817 -1.0 -1.4 Decarboxylase family protein compare
Pf1N1B4_291 -1.0 -5.1 Major outer membrane lipoprotein I compare
Pf1N1B4_1194 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_2884 -1.0 -2.5 Paraquat-inducible protein A compare
Pf1N1B4_5014 -1.0 -1.2 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_4715 -1.0 -2.3 Transcriptional regulator compare
Pf1N1B4_5737 -0.9 -2.7 Nitrate/nitrite transporter compare
Pf1N1B4_5219 -0.9 -1.8 tRNA-Gly-CCC compare
Pf1N1B4_1052 -0.9 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_2178 -0.9 -1.2 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_1869 -0.9 -4.2 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_259 -0.9 -1.9 Glutathione peroxidase family protein compare
Pf1N1B4_13 -0.9 -1.6 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2465 -0.9 -1.1 Two-component response regulator CreB compare
Pf1N1B4_602 -0.9 -1.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_1724 -0.9 -1.7 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_2269 -0.9 -1.8 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_1007 -0.9 -2.5 Transcriptional regulator, AraC family compare
Pf1N1B4_2453 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_2502 -0.9 -2.4 Coenzyme PQQ synthesis protein B compare
Pf1N1B4_855 -0.9 -2.8 FIG021952: putative membrane protein compare
Pf1N1B4_5861 -0.9 -2.1 Alpha/beta hydrolase fold (EC 3.8.1.5) compare
Pf1N1B4_5348 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_2498 -0.9 -4.2 Coenzyme PQQ synthesis protein F (EC 3.4.99.-) compare
Pf1N1B4_5898 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_3451 -0.8 -2.0 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_236 -0.8 -1.5 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_3751 -0.8 -1.5 FIG00953060: hypothetical protein compare
Pf1N1B4_1353 -0.8 -2.3 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_3729 -0.8 -1.8 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2048 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_2155 -0.8 -1.9 Glycine cleavage system transcriptional activator compare
Pf1N1B4_348 -0.8 -2.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_1469 -0.8 -6.2 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_1675 -0.8 -1.6 Transcriptional regulator compare
Pf1N1B4_228 -0.8 -1.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_5124 -0.8 -3.2 two component transcriptional regulator, LuxR family compare
Pf1N1B4_4556 -0.8 -1.6 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrite across organisms