Experiment set11IT037 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Sodium nitrate 5mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.9 -5.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -4.9 -18.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1627 -4.8 -7.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2547 -4.7 -4.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2272 -4.5 -6.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1626 -4.3 -10.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1624 -4.1 -11.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_15 -4.1 -6.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_236 -4.0 -4.2 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_1534 -4.0 -21.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_237 -4.0 -6.0 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_2548 -3.9 -8.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_5665 -3.8 -7.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1315 -3.8 -8.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_742 -3.7 -11.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_58 -3.7 -9.6 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1533 -3.7 -12.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5666 -3.6 -6.4 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2009 -3.6 -8.5 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_235 -3.5 -11.4 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_12 -3.5 -7.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2545 -3.3 -14.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_847 -3.3 -9.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2303 -3.2 -12.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1408 -3.2 -3.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1831 -3.2 -11.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2384 -3.2 -11.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1610 -3.1 -4.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1 -3.1 -4.8 Colicin V production protein compare
Pf1N1B4_3812 -3.1 -9.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2858 -3.0 -13.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2338 -3.0 -9.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3081 -3.0 -20.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_762 -3.0 -8.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1830 -3.0 -10.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2879 -2.9 -9.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1434 -2.9 -6.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2011 -2.9 -10.3 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_1611 -2.9 -4.5 Nitrogen regulation protein NR(I) compare
Pf1N1B4_350 -2.9 -7.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3840 -2.8 -5.3 Response regulator NasT conserved
Pf1N1B4_2010 -2.8 -8.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1067 -2.8 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_3835 -2.8 -16.0 Nitrate reductase (EC 1.7.99.4) (from data) conserved
Pf1N1B4_4065 -2.8 -7.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3697 -2.7 -9.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_418 -2.6 -7.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf1N1B4_1024 -2.5 -6.2 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_3506 -2.4 -7.2 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2526 -2.4 -12.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4035 -2.4 -3.7 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2549 -2.4 -6.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2337 -2.3 -5.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1307 -2.3 -4.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2878 -2.2 -9.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1617 -2.2 -8.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5926 -2.2 -11.3 hypothetical protein compare
Pf1N1B4_3627 -2.2 -3.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_1052 -2.1 -3.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_4029 -2.1 -4.4 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_5224 -2.1 -4.1 tRNA-Arg-CCT compare
Pf1N1B4_1565 -2.1 -3.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_72 -2.0 -2.8 Transcriptional regulator, LysR family compare
Pf1N1B4_1625 -2.0 -3.4 FIG00956267: hypothetical protein compare
Pf1N1B4_2850 -2.0 -9.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2282 -2.0 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1668 -2.0 -5.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_188 -2.0 -3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4038 -2.0 -2.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2167 -1.9 -4.9 Ammonium transporter compare
Pf1N1B4_4039 -1.9 -6.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2380 -1.9 -10.5 Cytochrome B561 compare
Pf1N1B4_4028 -1.9 -3.6 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2112 -1.9 -11.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_556 -1.8 -3.5 Gluconate permease compare
Pf1N1B4_5925 -1.8 -7.6 hypothetical protein compare
Pf1N1B4_2885 -1.8 -5.8 Paraquat-inducible protein A compare
Pf1N1B4_3837 -1.8 -8.0 Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) conserved
Pf1N1B4_3325 -1.7 -2.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1370 -1.6 -1.9 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_602 -1.6 -4.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_4040 -1.6 -2.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2886 -1.6 -9.4 Paraquat-inducible protein B compare
Pf1N1B4_2381 -1.6 -9.3 Protein yceI precursor compare
Pf1N1B4_1906 -1.6 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4030 -1.6 -2.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_718 -1.6 -5.7 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_5924 -1.5 -6.9 hypothetical protein compare
Pf1N1B4_1475 -1.5 -4.8 FIG00962376: hypothetical protein compare
Pf1N1B4_3328 -1.5 -1.4 Rhodanese-like domain protein compare
Pf1N1B4_717 -1.5 -5.3 Iron-regulated protein A precursor compare
Pf1N1B4_339 -1.5 -3.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3443 -1.5 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_2280 -1.5 -6.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2859 -1.4 -9.0 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3841 -1.4 -3.3 Nitrate ABC transporter, nitrate-binding protein compare
Pf1N1B4_821 -1.4 -6.8 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_327 -1.4 -1.7 hypothetical protein compare
Pf1N1B4_4041 -1.4 -3.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_3153 -1.4 -2.1 hypothetical protein compare
Pf1N1B4_2456 -1.4 -3.4 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_715 -1.4 -4.7 Iron-regulated protein A precursor compare
Pf1N1B4_1837 -1.4 -1.9 Osmotically inducible protein C compare
Pf1N1B4_3906 -1.4 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4419 -1.4 -2.5 Organosulfonate utilization protein SsuF compare
Pf1N1B4_974 -1.3 -4.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1535 -1.3 -2.3 hypothetical protein compare
Pf1N1B4_2502 -1.3 -4.7 Coenzyme PQQ synthesis protein B compare
Pf1N1B4_652 -1.3 -7.3 Sensory box histidine kinase compare
Pf1N1B4_2225 -1.2 -7.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_3435 -1.2 -2.1 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_4108 -1.2 -3.1 Hydrolase, alpha/beta fold family compare
Pf1N1B4_3143 -1.2 -3.0 RecA protein compare
Pf1N1B4_2884 -1.2 -3.3 Paraquat-inducible protein A compare
Pf1N1B4_1566 -1.2 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5927 -1.2 -10.0 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_5152 -1.2 -3.6 hypothetical protein compare
Pf1N1B4_5283 -1.2 -2.4 hypothetical protein compare
Pf1N1B4_3794 -1.2 -2.8 hypothetical protein compare
Pf1N1B4_2178 -1.1 -2.6 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_3518 -1.1 -2.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_4397 -1.1 -2.2 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_5972 -1.1 -2.8 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_4857 -1.1 -3.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3451 -1.1 -4.1 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_578 -1.1 -2.6 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_5370 -1.1 -1.2 hypothetical protein compare
Pf1N1B4_977 -1.1 -1.9 Molybdenum cofactor biosynthesis protein MoaC compare
Pf1N1B4_724 -1.1 -2.7 DNA-binding response regulator ColR compare
Pf1N1B4_2503 -1.1 -6.2 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_2004 -1.1 -1.6 putative membrane protein compare
Pf1N1B4_2458 -1.0 -2.4 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_13 -1.0 -1.9 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_765 -1.0 -3.3 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_5542 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_4192 -1.0 -2.8 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_27 -1.0 -3.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_4001 -1.0 -2.5 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_2501 -1.0 -5.4 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf1N1B4_5620 -1.0 -1.1 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_4393 -1.0 -1.8 Ferredoxin reductase compare
Pf1N1B4_1095 -1.0 -6.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf1N1B4_1113 -1.0 -3.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1653 -1.0 -3.1 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_5509 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_176 -0.9 -1.9 Acetylpolyamine aminohydrolase compare
Pf1N1B4_2322 -0.9 -1.7 FIG015547: peptidase, M16 family compare
Pf1N1B4_1057 -0.9 -1.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2621 -0.9 -1.3 PspA/IM30 family protein compare
Pf1N1B4_1135 -0.9 -2.4 FIG00960055: hypothetical protein compare
Pf1N1B4_3241 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_600 -0.9 -4.2 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_5383 -0.9 -5.3 hypothetical protein compare
Pf1N1B4_2283 -0.9 -1.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_2359 -0.9 -2.2 Chemotaxis signal transduction protein compare
Pf1N1B4_2224 -0.9 -2.3 FIG00953390: hypothetical protein compare
Pf1N1B4_647 -0.9 -4.8 hypothetical protein compare
Pf1N1B4_866 -0.9 -1.9 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_2853 -0.9 -1.1 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_3458 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_609 -0.9 -2.3 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_2227 -0.9 -1.6 FIG019278: hypothetical protein compare
Pf1N1B4_3485 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_5560 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_3768 -0.9 -2.7 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5513 -0.9 -3.3 hypothetical protein compare
Pf1N1B4_777 -0.9 -4.4 Membrane protein glpM compare
Pf1N1B4_5659 -0.9 -5.5 NfuA Fe-S protein maturation compare
Pf1N1B4_2006 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_1749 -0.9 -0.9 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_678 -0.9 -4.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_1974 -0.8 -1.9 L-lysine permease compare
Pf1N1B4_1679 -0.8 -1.1 Membrane-fusion protein compare
Pf1N1B4_648 -0.8 -7.6 Outer membrane porin, OprD family compare
Pf1N1B4_1159 -0.8 -2.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_3816 -0.8 -3.8 FIG139976: hypothetical protein compare
Pf1N1B4_3074 -0.8 -1.3 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_2980 -0.8 -1.5 Acetylornithine aminotransferase (EC 2.6.1.11) compare
Pf1N1B4_241 -0.8 -1.9 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_617 -0.8 -1.2 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3836 -0.8 -0.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_662 -0.8 -2.0 FIG00955875: hypothetical protein compare
Pf1N1B4_4372 -0.8 -2.7 Galactitol utilization operon repressor compare
Pf1N1B4_2499 -0.8 -3.6 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_3818 -0.8 -2.0 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_5561 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_1236 -0.8 -3.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_4381 -0.8 -1.9 Transcriptional regulator, LysR family compare
Pf1N1B4_4979 -0.8 -3.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_7 -0.8 -3.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_3692 -0.8 -2.4 Chaperone protein HtpG compare
Pf1N1B4_764 -0.8 -2.7 Uncharacterized isomerase yddE, PhzC-PhzF family compare
Pf1N1B4_5904 -0.8 -1.3 FIG00955320: hypothetical protein compare
Pf1N1B4_4592 -0.8 -2.2 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_2067 -0.8 -1.8 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_3833 -0.8 -3.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5433 -0.8 -2.5 hypothetical protein compare
Pf1N1B4_5508 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_5219 -0.7 -1.6 tRNA-Gly-CCC compare
Pf1N1B4_722 -0.7 -0.9 SAM-dependent methyltransferases compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Sodium nitrate across organisms