Experiment set11IT036 for Paraburkholderia graminis OAS925

Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Group: in planta
Media: + Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Culturing: Burkholderia_OAS925_ML2, pot, at 26 (C), (Solid)
By: Marta Torres on 26-Aug-21

Specific Phenotypes

For 11 genes in this experiment

For in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days in Paraburkholderia graminis OAS925

For in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days across organisms

SEED Subsystems

Subsystem	#Specific
Formate hydrogenase	3
Methanogenesis	2
Ammonia assimilation	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Methane metabolism
• Glycolysis / Gluconeogenesis
• Glyoxylate and dicarboxylate metabolism
• 1,2-Dichloroethane degradation
• Propanoate metabolism
• Butanoate metabolism
• Folate biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
methyl-coenzyme M oxidation to CO2 II	6	4	1
methyl-coenzyme M oxidation to CO2 I	6	3	1
methanogenesis from H2 and CO2	6	3	1
reductive acetyl coenzyme A pathway II (autotrophic methanogens)	6	3	1
methoxylated aromatic compound degradation II	9	5	1
gluconeogenesis II (Methanobacterium thermoautotrophicum)	18	11	1
superpathway of methanogenesis	21	5	1
Methanobacterium thermoautotrophicum biosynthetic metabolism	56	23	1