Experiment set11IT035 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Ammonium chloride 20mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5665 -5.2 -7.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_6 -5.1 -5.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1627 -4.5 -7.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_15 -4.4 -6.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1533 -4.2 -11.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2547 -4.2 -4.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1534 -4.1 -23.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1408 -4.1 -5.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2545 -4.0 -16.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2880 -4.0 -14.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2272 -3.9 -6.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_5666 -3.9 -5.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1624 -3.8 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2282 -3.7 -13.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1626 -3.7 -10.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2303 -3.6 -14.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_974 -3.5 -5.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_1831 -3.5 -12.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1067 -3.5 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2548 -3.5 -7.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_350 -3.5 -9.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2338 -3.4 -10.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_742 -3.4 -10.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2879 -3.4 -9.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2549 -3.3 -9.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1307 -3.3 -3.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1315 -3.3 -8.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_4065 -3.2 -8.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2384 -3.2 -12.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_4038 -3.2 -4.1 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_847 -3.2 -9.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2112 -3.2 -16.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3518 -3.1 -4.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_12 -3.1 -6.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2009 -3.1 -6.6 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_762 -3.1 -9.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2858 -3.0 -12.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4030 -2.9 -4.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_600 -2.9 -7.4 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_1830 -2.9 -10.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1434 -2.9 -6.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3697 -2.8 -8.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_3812 -2.7 -9.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1565 -2.7 -5.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1617 -2.6 -9.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2850 -2.6 -10.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4029 -2.5 -4.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_578 -2.5 -5.1 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2010 -2.5 -7.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_58 -2.4 -5.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3153 -2.3 -3.3 hypothetical protein compare
Pf1N1B4_1610 -2.3 -4.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_5926 -2.2 -13.1 hypothetical protein compare
Pf1N1B4_2878 -2.2 -8.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_603 -2.2 -5.0 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_5925 -2.2 -9.1 hypothetical protein compare
Pf1N1B4_3081 -2.1 -16.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2337 -2.1 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2011 -2.0 -7.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_4028 -2.0 -3.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1668 -2.0 -5.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_4035 -2.0 -2.0 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_890 -2.0 -3.6 DNA recombination and repair protein RecO compare
Pf1N1B4_2886 -1.9 -11.8 Paraquat-inducible protein B compare
Pf1N1B4_1317 -1.9 -3.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_2380 -1.9 -10.8 Cytochrome B561 compare
Pf1N1B4_4041 -1.9 -3.7 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_339 -1.9 -2.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3906 -1.9 -3.6 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2381 -1.8 -10.3 Protein yceI precursor compare
Pf1N1B4_1611 -1.8 -5.0 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3241 -1.8 -2.2 hypothetical protein compare
Pf1N1B4_1566 -1.8 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_3506 -1.8 -5.2 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_556 -1.8 -3.5 Gluconate permease compare
Pf1N1B4_2005 -1.8 -2.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4040 -1.8 -3.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_4039 -1.8 -5.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_327 -1.8 -3.0 hypothetical protein compare
Pf1N1B4_2884 -1.8 -4.8 Paraquat-inducible protein A compare
Pf1N1B4_823 -1.8 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5927 -1.6 -13.1 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_2280 -1.6 -8.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3833 -1.6 -6.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_652 -1.6 -8.2 Sensory box histidine kinase compare
Pf1N1B4_4299 -1.6 -3.4 sensor histidine kinase compare
Pf1N1B4_1057 -1.6 -2.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1 -1.5 -2.4 Colicin V production protein compare
Pf1N1B4_5924 -1.5 -6.5 hypothetical protein compare
Pf1N1B4_2859 -1.5 -8.6 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1870 -1.5 -3.8 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1492 -1.4 -1.7 FIG00959437: hypothetical protein compare
Pf1N1B4_751 -1.4 -1.8 hypothetical protein compare
Pf1N1B4_2172 -1.4 -3.4 Protein of unknown function DUF484 compare
Pf1N1B4_3074 -1.4 -2.0 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_875 -1.4 -3.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1906 -1.4 -2.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2105 -1.4 -1.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_620 -1.4 -4.5 Glycine cleavage system H protein compare
Pf1N1B4_3991 -1.3 -2.6 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_5383 -1.3 -7.1 hypothetical protein compare
Pf1N1B4_1535 -1.3 -2.9 hypothetical protein compare
Pf1N1B4_1683 -1.3 -2.0 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_1336 -1.3 -1.7 Putative multicopper oxidases compare
Pf1N1B4_1625 -1.2 -1.7 FIG00956267: hypothetical protein compare
Pf1N1B4_2526 -1.2 -8.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1024 -1.2 -3.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_2885 -1.2 -3.6 Paraquat-inducible protein A compare
Pf1N1B4_419 -1.2 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_5620 -1.2 -2.1 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_4857 -1.2 -2.9 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_595 -1.2 -6.3 Glucose ABC transport system, inner membrane component 1 compare
Pf1N1B4_821 -1.2 -6.2 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_5659 -1.1 -7.0 NfuA Fe-S protein maturation compare
Pf1N1B4_648 -1.1 -10.0 Outer membrane porin, OprD family compare
Pf1N1B4_3143 -1.1 -2.6 RecA protein compare
Pf1N1B4_27 -1.1 -3.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_4220 -1.1 -2.9 Maebl compare
Pf1N1B4_5898 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_275 -1.1 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_1236 -1.1 -4.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_598 -1.1 -3.3 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_2874 -1.1 -2.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_717 -1.1 -4.8 Iron-regulated protein A precursor compare
Pf1N1B4_475 -1.1 -2.6 ABC-type multidrug transport system, permease component compare
Pf1N1B4_1462 -1.1 -6.9 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_2853 -1.1 -1.8 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_3111 -1.1 -1.2 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_3865 -1.1 -1.7 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_602 -1.0 -2.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_689 -1.0 -2.3 FIG00954888: hypothetical protein compare
Pf1N1B4_1619 -1.0 -5.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_1056 -1.0 -2.9 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf1N1B4_3057 -1.0 -3.1 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_338 -1.0 -1.9 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_544 -1.0 -2.6 Small-conductance mechanosensitive channel compare
Pf1N1B4_3468 -1.0 -1.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_647 -1.0 -5.3 hypothetical protein compare
Pf1N1B4_593 -1.0 -2.6 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf1N1B4_164 -1.0 -1.5 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_594 -1.0 -3.7 Glucose ABC transport system, inner membrane component 2 compare
Pf1N1B4_4603 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_1653 -1.0 -4.2 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_5278 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_1593 -1.0 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3011 -0.9 -2.2 Tyrosine recombinase XerD compare
Pf1N1B4_5509 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_3260 -0.9 -2.1 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_2980 -0.9 -2.1 Acetylornithine aminotransferase (EC 2.6.1.11) compare
Pf1N1B4_493 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_4830 -0.9 -1.8 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_1334 -0.9 -1.4 FIG00955840: hypothetical protein compare
Pf1N1B4_2334 -0.9 -2.0 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_2674 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_1150 -0.9 -2.6 AmpE protein compare
Pf1N1B4_1060 -0.9 -1.9 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_1113 -0.9 -3.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_174 -0.9 -2.6 Lipid A export ATP-binding/permease protein MsbA compare
Pf1N1B4_901 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_5224 -0.9 -1.7 tRNA-Arg-CCT compare
Pf1N1B4_3665 -0.9 -2.6 Transcriptional regulator, TetR family compare
Pf1N1B4_2372 -0.9 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_2706 -0.9 -1.8 FIG00954871: hypothetical protein compare
Pf1N1B4_1235 -0.9 -3.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2499 -0.9 -3.7 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_4108 -0.9 -2.3 Hydrolase, alpha/beta fold family compare
Pf1N1B4_4403 -0.9 -1.7 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_5353 -0.9 -3.0 hypothetical protein compare
Pf1N1B4_1707 -0.8 -2.3 Efflux membrane fusion protein, RND family compare
Pf1N1B4_1065 -0.8 -3.7 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_4870 -0.8 -1.9 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_3290 -0.8 -1.7 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_2170 -0.8 -3.4 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf1N1B4_5561 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_336 -0.8 -6.2 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_3751 -0.8 -1.6 FIG00953060: hypothetical protein compare
Pf1N1B4_2209 -0.8 -5.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1671 -0.8 -2.2 FIG00954962: hypothetical protein compare
Pf1N1B4_1364 -0.8 -3.1 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_2411 -0.8 -1.7 FIG00953568: hypothetical protein compare
Pf1N1B4_3152 -0.8 -2.8 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_4828 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_898 -0.8 -4.5 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_29 -0.8 -1.9 FIG00967200: hypothetical protein compare
Pf1N1B4_2094 -0.8 -2.4 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf1N1B4_4553 -0.8 -2.4 FIG00959354: hypothetical protein compare
Pf1N1B4_3443 -0.8 -1.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_596 -0.8 -3.2 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_32 -0.8 -2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_1115 -0.8 -5.0 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_5560 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_3445 -0.8 -1.9 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_3889 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_13 -0.8 -2.1 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_1660 -0.8 -2.5 FIG00953324: hypothetical protein compare
Pf1N1B4_2935 -0.8 -1.5 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_606 -0.8 -0.9 Iron siderophore sensor protein compare
Pf1N1B4_5370 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_4833 -0.8 -1.4 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3637 -0.8 -1.9 FlhB domain protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms