Experiment set11IT035 for Pseudomonas fluorescens FW300-N1B4

Compare to:

nitrogen source Ammonium chloride 20mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_5591 +1.4 4.6 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_1695 +1.0 2.9 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_1194 +1.0 2.1 hypothetical protein compare
Pf1N1B4_5920 +0.9 3.6 Transcriptional regulator, AraC family compare
Pf1N1B4_4669 +0.9 2.1 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_4132 +0.9 1.5 Mobile element protein compare
Pf1N1B4_2102 +0.9 2.1 hypothetical protein compare
Pf1N1B4_4441 +0.9 2.0 Cyanate hydratase (EC 4.2.1.104) compare
Pf1N1B4_4952 +0.9 2.0 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_4177 +0.9 1.4 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_5699 +0.8 2.0 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_1482 +0.8 3.3 hypothetical protein compare
Pf1N1B4_3267 +0.8 2.9 FIG00954264: hypothetical protein compare
Pf1N1B4_2322 +0.8 1.9 FIG015547: peptidase, M16 family compare
Pf1N1B4_5242 +0.8 2.1 hypothetical protein compare
Pf1N1B4_1993 +0.8 1.1 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_733 +0.8 2.5 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_3715 +0.8 3.5 Cobalamin synthase compare
Pf1N1B4_5348 +0.8 1.5 hypothetical protein compare
Pf1N1B4_814 +0.8 1.8 Transcriptional regulator, PadR family compare
Pf1N1B4_232 +0.8 1.3 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3325 +0.8 1.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_4799 +0.8 1.5 Multidrug resistance protein B compare
Pf1N1B4_1716 +0.7 2.2 FIG00953394: hypothetical protein compare
Pf1N1B4_883 +0.7 1.5 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_855 +0.7 2.1 FIG021952: putative membrane protein compare
Pf1N1B4_743 +0.7 2.8 Sodium-type flagellar protein motY precursor compare
Pf1N1B4_5505 +0.7 2.3 hypothetical protein compare
Pf1N1B4_4594 +0.7 1.6 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_4826 +0.7 1.2 glutamine synthetase family protein compare
Pf1N1B4_4717 +0.7 1.6 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_4855 +0.7 1.7 Response regulator compare
Pf1N1B4_6037 +0.7 2.9 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_1508 +0.7 1.4 Lysophospholipid acyltransferase compare
Pf1N1B4_558 +0.7 4.1 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf1N1B4_3563 +0.7 1.8 hypothetical protein compare
Pf1N1B4_1463 +0.7 4.0 hypothetical protein compare
Pf1N1B4_198 +0.6 2.3 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_218 +0.6 4.1 Periplasmic binding protein compare
Pf1N1B4_3354 +0.6 1.7 FIG00954793: hypothetical protein compare
Pf1N1B4_5870 +0.6 1.9 VgrG protein compare
Pf1N1B4_1456 +0.6 4.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_4181 +0.6 2.3 FIG00957123: hypothetical protein compare
Pf1N1B4_92 +0.6 3.1 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_5322 +0.6 2.1 hypothetical protein compare
Pf1N1B4_4571 +0.6 2.2 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_3485 +0.6 1.8 hypothetical protein compare
Pf1N1B4_2154 +0.6 1.7 hypothetical protein compare
Pf1N1B4_5099 +0.6 2.9 Proline iminopeptidase (EC 3.4.11.5) compare
Pf1N1B4_387 +0.6 2.4 hypothetical protein compare
Pf1N1B4_5726 +0.6 1.4 Ferredoxin compare
Pf1N1B4_5762 +0.6 2.0 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_1128 +0.6 1.3 hypothetical protein compare
Pf1N1B4_5059 +0.6 0.9 Transcriptional regulator, LysR family compare
Pf1N1B4_5710 +0.6 1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_5949 +0.6 1.1 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_1465 +0.6 5.0 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_722 +0.6 1.7 SAM-dependent methyltransferases compare
Pf1N1B4_21 +0.6 2.3 Probable hydrolase compare
Pf1N1B4_4255 +0.6 1.6 Putative phosphatase YfbT compare
Pf1N1B4_2870 +0.6 1.1 Regulator of competence-specific genes compare
Pf1N1B4_1055 +0.6 1.7 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_1011 +0.6 2.7 ribosomal subunit interface protein, putative compare
Pf1N1B4_2284 +0.6 2.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_1457 +0.6 3.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_3130 +0.6 2.1 Bacteriophage protein GP46 compare
Pf1N1B4_5618 +0.6 0.9 Excinuclease ABC subunit C compare
Pf1N1B4_886 +0.6 1.5 FIG137478: Hypothetical protein compare
Pf1N1B4_2433 +0.6 1.3 FIG00953108: hypothetical protein compare
Pf1N1B4_2774 +0.6 1.3 hypothetical protein compare
Pf1N1B4_3808 +0.6 1.8 hydrolase, haloacid dehalogenase-like family compare
Pf1N1B4_5600 +0.6 2.3 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_574 +0.6 1.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_3517 +0.6 1.6 hypothetical protein compare
Pf1N1B4_1008 +0.6 1.0 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_5909 +0.6 2.0 Exoenzymes regulatory protein AepA precursor compare
Pf1N1B4_4201 +0.6 1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_5284 +0.6 1.3 hypothetical protein compare
Pf1N1B4_1833 +0.6 1.7 FIG00953718: hypothetical protein compare
Pf1N1B4_4017 +0.6 2.2 DNA-binding heavy metal response regulator compare
Pf1N1B4_3917 +0.6 2.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_1519 +0.6 1.8 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Pf1N1B4_117 +0.6 1.7 Iron siderophore sensor protein compare
Pf1N1B4_3843 +0.6 2.4 Ribosome modulation factor compare
Pf1N1B4_1464 +0.5 3.0 Glycosyl transferase compare
Pf1N1B4_5331 +0.5 1.0 hypothetical protein compare
Pf1N1B4_4997 +0.5 2.1 Methyl-accepting chemotaxis protein compare
Pf1N1B4_1967 +0.5 1.4 hypothetical protein compare
Pf1N1B4_5112 +0.5 1.6 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_4438 +0.5 1.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_5917 +0.5 1.4 Multimeric flavodoxin WrbA compare
Pf1N1B4_1212 +0.5 1.5 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_3410 +0.5 2.4 FIG00964654: hypothetical protein compare
Pf1N1B4_3966 +0.5 1.4 serine/threonine protein kinase compare
Pf1N1B4_2511 +0.5 1.8 hypothetical protein compare
Pf1N1B4_3492 +0.5 2.1 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf1N1B4_1443 +0.5 2.4 FIG074102: hypothetical protein compare
Pf1N1B4_5611 +0.5 1.3 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_2413 +0.5 1.7 Permeases of the major facilitator superfamily compare
Pf1N1B4_5490 +0.5 1.6 hypothetical protein compare
Pf1N1B4_2888 +0.5 2.4 FIG00961017: hypothetical protein compare
Pf1N1B4_4219 +0.5 1.6 FIG01074225: hypothetical protein compare
Pf1N1B4_4666 +0.5 2.4 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_3503 +0.5 1.8 Two-component response regulator PfeR, enterobactin compare
Pf1N1B4_4397 +0.5 1.2 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_139 +0.5 1.7 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_5649 +0.5 1.5 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_769 +0.5 2.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3350 +0.5 1.3 FIG00954807: hypothetical protein compare
Pf1N1B4_6030 +0.5 1.4 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) compare
Pf1N1B4_569 +0.5 2.8 Ribonuclease BN (EC 3.1.-.-) compare
Pf1N1B4_4414 +0.5 1.5 Bll6261 protein compare
Pf1N1B4_867 +0.5 1.7 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_3972 +0.5 1.3 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_623 +0.5 1.3 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_5386 +0.5 1.0 hypothetical protein compare
Pf1N1B4_233 +0.5 2.1 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
Pf1N1B4_4253 +0.5 1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4318 +0.5 1.6 hypothetical protein compare
Pf1N1B4_5460 +0.5 1.4 TolA protein compare
Pf1N1B4_3552 +0.5 1.6 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_456 +0.5 1.8 FIG146278: Maf/YceF/YhdE family protein compare
Pf1N1B4_5838 +0.5 1.2 FIG00956589: hypothetical protein compare
Pf1N1B4_78 +0.5 2.3 FIG00956937: hypothetical protein compare
Pf1N1B4_3370 +0.5 2.1 ATPase associated with various cellular activities, AAA_5 compare
Pf1N1B4_2924 +0.5 1.0 FIG00955589: hypothetical protein compare
Pf1N1B4_4846 +0.5 2.4 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_429 +0.5 1.4 FIG00964214: hypothetical protein compare
Pf1N1B4_384 +0.5 1.4 proteinase inhibitor compare
Pf1N1B4_4408 +0.5 2.0 two-component response regulator compare
Pf1N1B4_5609 +0.5 1.3 Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79) compare
Pf1N1B4_4445 +0.5 1.2 acetyltransferase, GNAT family compare
Pf1N1B4_1849 +0.5 1.9 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_5283 +0.5 1.3 hypothetical protein compare
Pf1N1B4_2825 +0.5 1.4 EF hand domain protein compare
Pf1N1B4_3742 +0.5 0.8 Oxidoreductase, zinc-binding compare
Pf1N1B4_5880 +0.5 1.6 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_2071 +0.5 0.9 Protein phosphatase ImpM compare
Pf1N1B4_5847 +0.5 1.7 transcriptional activator FtrA compare
Pf1N1B4_3413 +0.5 1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_4623 +0.5 2.2 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) compare
Pf1N1B4_967 +0.5 1.3 hypothetical protein compare
Pf1N1B4_4566 +0.5 1.6 Universal stress protein family 7 compare
Pf1N1B4_4740 +0.5 1.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_597 +0.5 2.7 D-mannose isomerase (EC 5.3.1.7) (from data) compare
Pf1N1B4_1353 +0.5 1.6 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_756 +0.5 1.0 hypothetical protein compare
Pf1N1B4_5697 +0.5 1.7 putative exported protein compare
Pf1N1B4_4979 +0.5 1.7 Transcriptional regulator, AsnC family compare
Pf1N1B4_5906 +0.5 1.1 Esterase/lipase compare
Pf1N1B4_1367 +0.5 1.4 Glycine cleavage system transcriptional activator compare
Pf1N1B4_3126 +0.5 2.0 Phage tail length tape-measure protein compare
Pf1N1B4_2493 +0.5 1.6 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_5971 +0.5 2.2 2-Methylcitrate dehydratase AcnD compare
Pf1N1B4_5652 +0.5 1.4 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_363 +0.4 1.4 Thioredoxin compare
Pf1N1B4_4153 +0.4 1.4 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf1N1B4_525 +0.4 1.8 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_5897 +0.4 1.7 FIG00963512: hypothetical protein compare
Pf1N1B4_4851 +0.4 1.5 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_4806 +0.4 1.4 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_4531 +0.4 0.8 FIG01221261: hypothetical protein compare
Pf1N1B4_2150 +0.4 1.1 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_5709 +0.4 1.2 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_1350 +0.4 1.3 GCN5-related N-acetyltransferase compare
Pf1N1B4_776 +0.4 1.3 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
Pf1N1B4_5623 +0.4 1.4 hypothetical protein compare
Pf1N1B4_2080 +0.4 1.7 hypothetical protein compare
Pf1N1B4_1270 +0.4 2.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_5575 +0.4 0.8 hypothetical protein compare
Pf1N1B4_224 +0.4 1.3 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_3729 +0.4 1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_5443 +0.4 1.6 hypothetical protein compare
Pf1N1B4_5416 +0.4 2.0 hypothetical protein compare
Pf1N1B4_4274 +0.4 1.3 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain compare
Pf1N1B4_1834 +0.4 1.4 Dodecin (COG3360) Flavin-binding compare
Pf1N1B4_290 +0.4 3.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2157 +0.4 2.1 FIG00963784: hypothetical protein compare
Pf1N1B4_2983 +0.4 1.7 hypothetical protein compare
Pf1N1B4_4485 +0.4 0.8 membrane protein, putative compare
Pf1N1B4_448 +0.4 0.6 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_1528 +0.4 0.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3777 +0.4 1.6 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf1N1B4_5734 +0.4 1.8 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_2415 +0.4 1.8 TldD family protein, Beta/Gamma-proteobacterial subgroup compare
Pf1N1B4_4238 +0.4 1.1 hypothetical protein compare
Pf1N1B4_2339 +0.4 1.3 COG1872 compare
Pf1N1B4_1721 +0.4 0.8 DNA-binding heavy metal response regulator compare
Pf1N1B4_758 +0.4 1.8 Bacterioferritin compare
Pf1N1B4_2369 +0.4 1.5 Malonate transporter, MadM subunit compare
Pf1N1B4_6045 +0.4 1.7 CigR (Putative inner membrane protein) compare
Pf1N1B4_2242 +0.4 1.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf1N1B4_3025 +0.4 1.5 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_4847 +0.4 1.1 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_1299 +0.4 1.5 FIG014328: hypothetical protein compare
Pf1N1B4_4688 +0.4 1.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1637 +0.4 0.8 FIG00954739: hypothetical protein compare
Pf1N1B4_3159 +0.4 1.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_3132 +0.4 1.3 FIG121501: Prophage tail protein compare
Pf1N1B4_5258 +0.4 1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms