Experiment set11IT034 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 5mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2739 -6.5 -3.0 acetyltransferase, GNAT family compare
Pf1N1B4_5115 -6.0 -4.1 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_5113 -5.8 -5.5 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_5666 -5.7 -3.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2851 -5.4 -2.9 hypothetical protein compare
Pf1N1B4_866 -5.2 -2.7 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_1408 -5.1 -6.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1533 -4.7 -8.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5665 -4.6 -7.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_327 -4.6 -3.0 hypothetical protein compare
Pf1N1B4_4038 -4.6 -2.9 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1565 -4.5 -3.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1624 -4.4 -11.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1434 -4.1 -10.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2880 -4.1 -14.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2545 -4.1 -15.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_6 -4.0 -6.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5224 -4.0 -3.7 tRNA-Arg-CCT compare
Pf1N1B4_1307 -4.0 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_15 -4.0 -4.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1534 -3.9 -21.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2106 -3.9 -4.2 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_2282 -3.8 -12.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3501 -3.8 -6.3 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_5112 -3.8 -3.6 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_2272 -3.8 -6.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1315 -3.7 -9.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2547 -3.7 -4.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_742 -3.7 -11.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_688 -3.6 -2.8 FIG00955483: hypothetical protein compare
Pf1N1B4_2783 -3.6 -3.1 Transcription elongation factor GreB-related protein compare
Pf1N1B4_2858 -3.6 -13.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2338 -3.5 -11.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3506 -3.5 -8.2 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1610 -3.5 -3.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2384 -3.5 -12.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1831 -3.4 -12.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2303 -3.4 -12.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_4039 -3.4 -8.9 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4851 -3.4 -3.1 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_350 -3.4 -7.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2337 -3.3 -6.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_58 -3.3 -6.9 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_5116 -3.3 -5.5 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
Pf1N1B4_1317 -3.3 -3.9 Sensor histidine kinase/response regulator compare
Pf1N1B4_600 -3.3 -6.3 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_5111 -3.3 -5.7 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf1N1B4_1067 -3.3 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1611 -3.2 -4.2 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2879 -3.2 -9.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1626 -3.2 -8.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3697 -3.2 -6.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_762 -3.1 -8.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2526 -3.0 -14.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_2549 -2.9 -8.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_5720 -2.9 -2.8 hypothetical protein compare
Pf1N1B4_3081 -2.9 -18.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4523 -2.9 -2.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_2850 -2.9 -9.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2878 -2.9 -9.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_974 -2.9 -5.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_847 -2.9 -6.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_34 -2.9 -2.3 Xanthine permease compare
Pf1N1B4_1906 -2.8 -5.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4040 -2.8 -3.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3468 -2.8 -2.3 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1627 -2.7 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2010 -2.7 -6.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_3812 -2.7 -6.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_27 -2.7 -4.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_2011 -2.7 -9.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_1617 -2.6 -9.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_4029 -2.6 -3.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2112 -2.6 -10.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_5926 -2.5 -10.2 hypothetical protein compare
Pf1N1B4_4473 -2.5 -2.7 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5402 -2.5 -3.0 hypothetical protein compare
Pf1N1B4_2859 -2.4 -11.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3729 -2.4 -2.4 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_188 -2.4 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_652 -2.4 -9.3 Sensory box histidine kinase compare
Pf1N1B4_1024 -2.4 -5.3 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_4028 -2.4 -3.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2150 -2.3 -2.0 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_122 -2.3 -3.2 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_1812 -2.3 -2.2 Iron siderophore sensor protein compare
Pf1N1B4_3906 -2.3 -2.3 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_5289 -2.3 -2.6 hypothetical protein compare
Pf1N1B4_2173 -2.2 -2.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_644 -2.2 -2.6 Cold shock protein CspC compare
Pf1N1B4_1830 -2.2 -7.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2227 -2.2 -2.7 FIG019278: hypothetical protein compare
Pf1N1B4_4845 -2.2 -3.9 Xylulose kinase (EC 2.7.1.17) compare
Pf1N1B4_2009 -2.2 -4.3 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_5925 -2.2 -6.3 hypothetical protein compare
Pf1N1B4_5619 -2.2 -3.2 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_846 -2.1 -1.4 hypothetical protein compare
Pf1N1B4_2381 -2.1 -8.6 Protein yceI precursor compare
Pf1N1B4_12 -2.1 -4.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_126 -2.1 -3.0 Pirin compare
Pf1N1B4_1234 -2.1 -5.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4139 -2.1 -1.8 Transcriptional regulator, MerR family compare
Pf1N1B4_5266 -2.1 -1.3 hypothetical protein compare
Pf1N1B4_4065 -2.1 -5.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3627 -2.1 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_2114 -2.0 -5.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2884 -2.0 -4.8 Paraquat-inducible protein A compare
Pf1N1B4_716 -2.0 -2.2 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_2280 -2.0 -6.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4847 -2.0 -2.0 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_1492 -2.0 -1.3 FIG00959437: hypothetical protein compare
Pf1N1B4_1653 -2.0 -6.4 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_5105 -2.0 -2.7 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_875 -2.0 -1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2283 -2.0 -1.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_5601 -1.9 -4.1 FIG00966546: hypothetical protein compare
Pf1N1B4_3328 -1.9 -1.5 Rhodanese-like domain protein compare
Pf1N1B4_2886 -1.9 -8.3 Paraquat-inducible protein B compare
Pf1N1B4_2635 -1.9 -2.6 hypothetical protein compare
Pf1N1B4_2224 -1.9 -2.4 FIG00953390: hypothetical protein compare
Pf1N1B4_2674 -1.8 -1.8 hypothetical protein compare
Pf1N1B4_4041 -1.8 -2.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4153 -1.8 -3.0 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf1N1B4_1 -1.8 -1.9 Colicin V production protein compare
Pf1N1B4_4848 -1.8 -5.1 Various polyols ABC transporter, permease component 2 compare
Pf1N1B4_1869 -1.8 -5.4 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_5924 -1.8 -5.1 hypothetical protein compare
Pf1N1B4_5574 -1.7 -2.1 hypothetical protein compare
Pf1N1B4_240 -1.7 -1.8 Transcriptional regulators compare
Pf1N1B4_1975 -1.7 -1.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_3595 -1.7 -1.7 Flagellin protein FlaG compare
Pf1N1B4_4717 -1.7 -1.3 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_3153 -1.7 -1.5 hypothetical protein compare
Pf1N1B4_2380 -1.6 -8.0 Cytochrome B561 compare
Pf1N1B4_1554 -1.6 -5.0 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_2433 -1.6 -2.3 FIG00953108: hypothetical protein compare
Pf1N1B4_345 -1.6 -1.1 Integration host factor beta subunit compare
Pf1N1B4_1614 -1.6 -2.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_1958 -1.6 -2.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4850 -1.6 -4.0 Various polyols ABC transporter, periplasmic substrate-binding protein compare
Pf1N1B4_5219 -1.6 -1.6 tRNA-Gly-CCC compare
Pf1N1B4_1762 -1.6 -3.5 FIG00957387: hypothetical protein compare
Pf1N1B4_544 -1.6 -1.5 Small-conductance mechanosensitive channel compare
Pf1N1B4_3451 -1.6 -2.2 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_2487 -1.6 -6.4 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2552 -1.6 -1.9 OsmC/Ohr family protein compare
Pf1N1B4_2042 -1.5 -4.0 Phosphate regulon metal ion transporter containing CBS domains compare
Pf1N1B4_6024 -1.5 -2.1 FIG00953292: hypothetical protein compare
Pf1N1B4_1899 -1.5 -3.0 Gfa-like protein compare
Pf1N1B4_4422 -1.5 -2.1 ABC transporter amino acid-binding protein compare
Pf1N1B4_4977 -1.5 -2.8 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf1N1B4_2490 -1.5 -4.0 Biotin synthesis protein BioC compare
Pf1N1B4_5342 -1.5 -1.7 hypothetical protein compare
Pf1N1B4_124 -1.5 -1.6 Mechanosensitive ion channel compare
Pf1N1B4_4870 -1.5 -1.4 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_1346 -1.5 -1.6 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_2939 -1.5 -4.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1730 -1.5 -2.0 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_855 -1.5 -2.0 FIG021952: putative membrane protein compare
Pf1N1B4_535 -1.5 -2.9 FIG00953341: hypothetical protein compare
Pf1N1B4_2377 -1.5 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_3613 -1.5 -2.1 hypothetical protein compare
Pf1N1B4_384 -1.5 -1.4 proteinase inhibitor compare
Pf1N1B4_2741 -1.5 -2.1 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf1N1B4_1993 -1.5 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_3836 -1.4 -1.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_2037 -1.4 -2.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_365 -1.4 -3.0 Cell division protein BolA compare
Pf1N1B4_2548 -1.4 -3.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2031 -1.4 -5.7 Aldose 1-epimerase conserved
Pf1N1B4_2885 -1.4 -3.6 Paraquat-inducible protein A compare
Pf1N1B4_4611 -1.4 -2.6 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_475 -1.4 -2.7 ABC-type multidrug transport system, permease component compare
Pf1N1B4_3143 -1.4 -3.8 RecA protein compare
Pf1N1B4_776 -1.4 -2.3 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
Pf1N1B4_4019 -1.4 -2.1 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_4612 -1.4 -2.5 FIG00954117: hypothetical protein compare
Pf1N1B4_2209 -1.4 -5.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4427 -1.4 -2.4 Glutamate transport membrane-spanning protein compare
Pf1N1B4_3518 -1.3 -1.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_4518 -1.3 -2.6 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_4866 -1.3 -1.3 hypothetical protein compare
Pf1N1B4_835 -1.3 -2.0 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_2249 -1.3 -2.0 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf1N1B4_4887 -1.3 -2.2 Pirin compare
Pf1N1B4_5029 -1.3 -2.2 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_4030 -1.3 -1.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_407 -1.3 -1.2 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_4335 -1.3 -1.5 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_1113 -1.3 -3.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4777 -1.3 -2.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_3785 -1.3 -1.8 FOG: Ankyrin repeat compare
Pf1N1B4_2491 -1.3 -1.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_5813 -1.3 -1.7 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_4192 -1.3 -2.2 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_4729 -1.3 -2.4 Hemolysin-type calcium-binding region compare
Pf1N1B4_1236 -1.3 -3.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1235 -1.3 -4.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_3241 -1.3 -1.3 hypothetical protein compare
Pf1N1B4_3525 -1.3 -1.7 hydrolase, alpha/beta fold family compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms