Experiment set11IT034 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 5mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_1463 +2.2 13.0 hypothetical protein compare
Pf1N1B4_1464 +2.1 12.8 Glycosyl transferase compare
Pf1N1B4_1461 +1.8 5.5 Protein fixF compare
Pf1N1B4_1465 +1.6 12.3 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_1458 +1.5 7.8 Probable transcription regulator Mig-14 compare
Pf1N1B4_724 +1.5 5.5 DNA-binding response regulator ColR compare
Pf1N1B4_909 +1.4 3.6 Ketosteroid isomerase-related protein compare
Pf1N1B4_1457 +1.3 8.6 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_3997 +1.3 4.8 Uncharacterized protein YtfM precursor compare
Pf1N1B4_4337 +1.2 2.4 Transcriptional regulator compare
Pf1N1B4_2322 +1.2 2.0 FIG015547: peptidase, M16 family compare
Pf1N1B4_2682 +1.2 2.6 Antiholin-like protein LrgA compare
Pf1N1B4_961 +1.2 9.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_3998 +1.2 4.9 putative exported protein compare
Pf1N1B4_5393 +1.1 2.5 hypothetical protein compare
Pf1N1B4_4355 +1.1 2.4 Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-) compare
Pf1N1B4_1279 +1.1 2.3 Flp pilus assembly protein TadB compare
Pf1N1B4_539 +1.1 2.5 Transcriptional regulators compare
Pf1N1B4_5556 +1.1 1.9 hypothetical protein compare
Pf1N1B4_1916 +1.1 2.4 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_960 +1.1 7.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_4855 +1.1 1.6 Response regulator compare
Pf1N1B4_4474 +1.1 1.8 transcription regulator protein compare
Pf1N1B4_1974 +1.1 2.5 L-lysine permease compare
Pf1N1B4_617 +1.1 1.7 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_1456 +1.1 5.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_4154 +1.1 3.3 Transcriptional regulator, AraC family compare
Pf1N1B4_233 +1.0 3.4 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
Pf1N1B4_1294 +1.0 1.5 VgrG protein compare
Pf1N1B4_5864 +1.0 2.5 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_4177 +1.0 1.9 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_1466 +1.0 2.9 hypothetical protein compare
Pf1N1B4_3362 +1.0 2.1 Multidrug resistance protein B compare
Pf1N1B4_1835 +1.0 1.0 hypothetical protein compare
Pf1N1B4_2290 +1.0 2.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf1N1B4_4123 +1.0 1.9 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_2176 +1.0 2.2 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_3996 +1.0 3.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_962 +1.0 6.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_2736 +1.0 2.1 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_4132 +0.9 1.7 Mobile element protein compare
Pf1N1B4_419 +0.9 2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_5815 +0.9 2.0 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_4999 +0.9 1.8 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_541 +0.9 2.8 hypothetical protein compare
Pf1N1B4_5685 +0.9 1.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_1568 +0.9 2.4 Twin-arginine translocation protein TatB compare
Pf1N1B4_623 +0.9 1.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3368 +0.9 1.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_1946 +0.9 2.7 Transcriptional regulator of glmS gene, DeoR family compare
Pf1N1B4_1212 +0.9 2.1 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_2912 +0.9 1.4 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_5722 +0.9 1.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_662 +0.9 1.5 FIG00955875: hypothetical protein compare
Pf1N1B4_756 +0.9 1.4 hypothetical protein compare
Pf1N1B4_799 +0.9 1.5 hypothetical protein compare
Pf1N1B4_3508 +0.8 2.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2411 +0.8 1.5 FIG00953568: hypothetical protein compare
Pf1N1B4_3594 +0.8 2.2 Flagellin protein FlaA compare
Pf1N1B4_4671 +0.8 1.7 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_1194 +0.8 2.1 hypothetical protein compare
Pf1N1B4_3141 +0.8 1.2 FIG00959768: hypothetical protein compare
Pf1N1B4_4253 +0.8 1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_2958 +0.8 1.6 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_3990 +0.8 2.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_4343 +0.8 1.6 hypothetical protein compare
Pf1N1B4_627 +0.8 1.7 hypothetical protein compare
Pf1N1B4_3872 +0.8 4.9 Putative analog of CcoH, COG3198 compare
Pf1N1B4_387 +0.8 2.0 hypothetical protein compare
Pf1N1B4_5058 +0.8 2.2 D-galactarate permease compare
Pf1N1B4_1721 +0.8 1.5 DNA-binding heavy metal response regulator compare
Pf1N1B4_2774 +0.8 1.6 hypothetical protein compare
Pf1N1B4_2695 +0.8 1.1 Rare lipoprotein A precursor compare
Pf1N1B4_886 +0.8 1.3 FIG137478: Hypothetical protein compare
Pf1N1B4_198 +0.8 1.4 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_2014 +0.8 2.2 Homocysteine S-methyltransferase (EC 2.1.1.10) compare
Pf1N1B4_175 +0.8 1.2 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_3889 +0.8 1.7 hypothetical protein compare
Pf1N1B4_4733 +0.8 1.6 Fap system putative outer membrane protein compare
Pf1N1B4_5415 +0.8 1.9 hypothetical protein compare
Pf1N1B4_3331 +0.8 1.5 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_3980 +0.8 1.4 Transcriptional regulator, HxlR family compare
Pf1N1B4_2894 +0.8 1.5 FIG00956317: hypothetical protein compare
Pf1N1B4_2401 +0.8 1.4 Lipoprotein, putative compare
Pf1N1B4_6041 +0.7 0.7 Carbon storage regulator compare
Pf1N1B4_4969 +0.7 1.4 FIG00956189: hypothetical protein compare
Pf1N1B4_5912 +0.7 1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1667 +0.7 2.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_2364 +0.7 1.8 Malonate decarboxylase beta subunit compare
Pf1N1B4_2435 +0.7 1.6 hypothetical protein compare
Pf1N1B4_1263 +0.7 1.3 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_5802 +0.7 2.5 benABC operon transcriptional activator BenR compare
Pf1N1B4_2807 +0.7 1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_3871 +0.7 5.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_5239 +0.7 1.6 hypothetical protein compare
Pf1N1B4_772 +0.7 2.8 ABC transporter for L-asparagine and L-glutamate, permease component 1 (from data) compare
Pf1N1B4_1782 +0.7 0.9 hypothetical protein compare
Pf1N1B4_5705 +0.7 2.9 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf1N1B4_1441 +0.7 4.3 Putative esterase, FIGfam005057 compare
Pf1N1B4_5463 +0.7 1.3 hypothetical protein compare
Pf1N1B4_1569 +0.7 5.1 Twin-arginine translocation protein TatC compare
Pf1N1B4_4423 +0.7 2.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_5699 +0.7 1.4 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_4293 +0.7 1.4 hypothetical protein compare
Pf1N1B4_5531 +0.7 1.9 hypothetical protein compare
Pf1N1B4_4296 +0.7 2.0 Histidine transporter, periplasmic histidine-binding protein compare
Pf1N1B4_3917 +0.7 2.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_4584 +0.7 2.6 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_4223 +0.7 1.5 Transcriptional regulator compare
Pf1N1B4_2981 +0.7 1.3 hypothetical protein compare
Pf1N1B4_1542 +0.7 1.5 Type IV pilus biogenesis protein PilN compare
Pf1N1B4_193 +0.7 2.7 Transporter, LysE family compare
Pf1N1B4_4824 +0.7 1.7 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_4140 +0.7 1.7 hypothetical protein compare
Pf1N1B4_4975 +0.7 1.3 hypothetical protein compare
Pf1N1B4_4659 +0.7 1.4 Putative outer membrane lipoprotein compare
Pf1N1B4_4673 +0.7 2.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_5906 +0.7 1.4 Esterase/lipase compare
Pf1N1B4_3421 +0.7 2.4 Integral membrane protein compare
Pf1N1B4_81 +0.7 0.9 Putative sulfate permease compare
Pf1N1B4_37 +0.7 2.2 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
Pf1N1B4_31 +0.7 1.8 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf1N1B4_4429 +0.7 1.6 No significant database matches compare
Pf1N1B4_701 +0.7 1.8 FIG00954094: hypothetical protein compare
Pf1N1B4_5658 +0.7 1.4 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf1N1B4_5631 +0.7 1.6 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4715 +0.7 1.8 Transcriptional regulator compare
Pf1N1B4_344 +0.7 1.4 hypothetical protein compare
Pf1N1B4_501 +0.7 1.1 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_3870 +0.7 5.3 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_5370 +0.7 0.7 hypothetical protein compare
Pf1N1B4_4833 +0.7 2.1 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2724 +0.7 3.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_2417 +0.7 1.5 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_3965 +0.7 1.3 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_3874 +0.7 2.2 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_4613 +0.6 0.9 FIG00953934: hypothetical protein compare
Pf1N1B4_3811 +0.6 1.4 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_3730 +0.6 1.1 Sodium-dependent transporter compare
Pf1N1B4_2413 +0.6 1.3 Permeases of the major facilitator superfamily compare
Pf1N1B4_2618 +0.6 2.5 FIG00955711: hypothetical protein compare
Pf1N1B4_3605 +0.6 1.2 Flagellar motor switch protein FliG compare
Pf1N1B4_5769 +0.6 0.9 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_5692 +0.6 2.2 Nitrate/nitrite transporter compare
Pf1N1B4_3303 +0.6 0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf1N1B4_1365 +0.6 1.8 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_4419 +0.6 1.0 Organosulfonate utilization protein SsuF compare
Pf1N1B4_2865 +0.6 2.3 Rieske 2Fe-2S family protein compare
Pf1N1B4_3499 +0.6 0.6 hypothetical protein compare
Pf1N1B4_1750 +0.6 0.8 Death on curing protein, Doc toxin compare
Pf1N1B4_1863 +0.6 3.7 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_3001 +0.6 1.1 hypothetical protein compare
Pf1N1B4_3684 +0.6 2.2 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_919 +0.6 1.0 hypothetical protein compare
Pf1N1B4_1528 +0.6 1.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4354 +0.6 1.5 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) compare
Pf1N1B4_4417 +0.6 1.6 Transcriptional regulator compare
Pf1N1B4_4163 +0.6 2.7 FIG00638718: hypothetical protein compare
Pf1N1B4_4810 +0.6 1.3 Polymyxin resistance protein PmrM compare
Pf1N1B4_5596 +0.6 2.4 Putative hydroxycinnamate transporter compare
Pf1N1B4_4271 +0.6 1.5 Hydrogen cyanide synthase HcnC / Opine oxidase subunit B compare
Pf1N1B4_101 +0.6 1.7 hypothetical protein compare
Pf1N1B4_2295 +0.6 2.0 Ferric iron ABC transporter, iron-binding protein compare
Pf1N1B4_2478 +0.6 2.9 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_3111 +0.6 1.1 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_4921 +0.6 1.6 Haloacid dehalogenase, type II compare
Pf1N1B4_3109 +0.6 2.3 S-formylglutathione hydrolase (EC 3.1.2.12) compare
Pf1N1B4_3905 +0.6 1.2 FIG00953423: hypothetical protein compare
Pf1N1B4_4282 +0.6 1.7 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_5405 +0.6 1.8 hypothetical protein compare
Pf1N1B4_5721 +0.6 1.1 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_4359 +0.6 1.8 PvcA protein, related to known isonitrile synthases compare
Pf1N1B4_998 +0.6 2.5 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_5062 +0.6 2.0 Homospermidine synthase (EC 2.5.1.44) compare
Pf1N1B4_2809 +0.6 2.4 Type IV fimbrial biogenesis protein FimT compare
Pf1N1B4_4952 +0.6 0.7 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_2793 +0.6 1.7 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf1N1B4_1670 +0.6 2.0 FIG001957: putative hydrolase compare
Pf1N1B4_692 +0.6 2.2 ABC spermidine/putrescine transporter, inner membrane subunit compare
Pf1N1B4_2640 +0.6 1.3 FIG003461: hypothetical protein compare
Pf1N1B4_2791 +0.6 1.0 Putative inner membrane protein (Fragment) compare
Pf1N1B4_1545 +0.6 3.7 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_4326 +0.6 1.3 N-carbamoylputrescine amidase (3.5.1.53) compare
Pf1N1B4_5591 +0.6 0.6 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_1878 +0.6 3.6 Cytochrome c4 compare
Pf1N1B4_488 +0.6 1.4 Cyn operon transcriptional activator compare
Pf1N1B4_3709 +0.6 1.4 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_6038 +0.6 1.0 FIG00953874: hypothetical protein compare
Pf1N1B4_4894 +0.6 1.5 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_842 +0.6 2.3 putative membrane protein compare
Pf1N1B4_3978 +0.6 1.9 Catalase (EC 1.11.1.6) compare
Pf1N1B4_1846 +0.6 2.7 Protein tyrosine/serine phosphatase compare
Pf1N1B4_5448 +0.6 0.7 hypothetical protein compare
Pf1N1B4_3305 +0.6 1.1 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_4888 +0.6 1.7 UvrD/REP helicase family protein compare
Pf1N1B4_3012 +0.6 1.4 Thiol:disulfide interchange protein DsbC compare
Pf1N1B4_5611 +0.6 0.9 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_2223 +0.6 1.5 FIG006231: RNA-binding protein compare
Pf1N1B4_1508 +0.6 1.0 Lysophospholipid acyltransferase compare
Pf1N1B4_3551 +0.6 1.6 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms