Experiment set11IT034 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and L-Glutamine (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS27370 -5.5 -11.3 anthranilate phosphoribosyltransferase compare
PFLU_RS04465 -5.5 -9.2 ATP phosphoribosyltransferase compare
PFLU_RS27365 -5.2 -10.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS04470 -5.2 -12.1 histidinol dehydrogenase compare
PFLU_RS02590 -5.2 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20540 -5.2 -13.0 phosphoribosylanthranilate isomerase compare
PFLU_RS01605 -5.1 -11.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01620 -5.0 -10.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS26290 -4.9 -2.3 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS01625 -4.9 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS02365 -4.7 -14.1 glycosyltransferase compare
PFLU_RS00175 -4.5 -11.2 tryptophan synthase subunit alpha compare
PFLU_RS03970 -4.4 -13.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01900 -4.4 -11.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24025 -4.3 -14.9 quinolinate synthase NadA compare
PFLU_RS28385 -4.0 -17.2 homoserine O-acetyltransferase compare
PFLU_RS00180 -3.9 -9.5 tryptophan synthase subunit beta compare
PFLU_RS01610 -3.9 -15.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS25715 -3.6 -11.7 RNA polymerase-binding protein DksA compare
PFLU_RS25585 -3.6 -4.3 exodeoxyribonuclease V subunit alpha compare
PFLU_RS20565 -3.6 -18.9 3-isopropylmalate dehydrogenase compare
PFLU_RS28165 -3.6 -15.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS09055 -3.5 -3.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS19015 -3.4 -9.0 anti-sigma factor compare
PFLU_RS01390 -3.4 -10.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS20510 -3.3 -15.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28390 -3.2 -10.2 methionine biosynthesis protein MetW compare
PFLU_RS20515 -3.2 -6.1 amidophosphoribosyltransferase compare
PFLU_RS20580 -3.1 -14.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28695 -3.0 -6.1 phosphoglycerate dehydrogenase compare
PFLU_RS27475 -2.9 -10.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS06055 -2.8 -2.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS20575 -2.6 -5.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS07665 -2.6 -3.5 type I DNA topoisomerase compare
PFLU_RS02565 -2.3 -8.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS01895 -2.2 -6.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS22595 -2.1 -4.0 OmpA family protein compare
PFLU_RS06310 -2.1 -7.0 sigma E protease regulator RseP compare
PFLU_RS24765 -2.1 -14.8 2-isopropylmalate synthase compare
PFLU_RS08155 -2.0 -5.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS25755 -1.9 -4.6 pantoate--beta-alanine ligase compare
PFLU_RS04015 -1.8 -2.2 1-phosphofructokinase compare
PFLU_RS25595 -1.8 -2.7 exodeoxyribonuclease V subunit gamma compare
PFLU_RS12980 -1.7 -7.4 nitrite/sulfite reductase compare
PFLU_RS25760 -1.7 -9.4 glucose-6-phosphate isomerase compare
PFLU_RS24555 -1.7 -5.9 thioredoxin fold domain-containing protein compare
PFLU_RS19165 -1.7 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS28615 -1.7 -9.8 heavy metal translocating P-type ATPase compare
PFLU_RS01285 -1.7 -2.0 HAMP domain-containing protein compare
PFLU_RS12800 -1.7 -3.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS31635 -1.7 -3.7 IS21 family transposase compare
PFLU_RS29515 -1.7 -8.9 RidA family protein compare
PFLU_RS07230 -1.6 -8.8 RNA polymerase sigma factor RpoE compare
PFLU_RS18505 -1.6 -9.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25360 -1.6 -6.2 glutamate 5-kinase compare
PFLU_RS10430 -1.6 -3.5 peptidase compare
PFLU_RS08655 -1.6 -3.3 heme ABC transporter permease compare
PFLU_RS21425 -1.6 -3.6 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS23070 -1.5 -1.6 50S ribosomal protein L32 compare
PFLU_RS31830 -1.5 -1.4 hypothetical protein compare
PFLU_RS25390 -1.5 -5.3 hypothetical protein compare
PFLU_RS28320 -1.5 -3.5 glutathione synthase compare
PFLU_RS02275 -1.5 -3.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS04370 -1.5 -7.4 superoxide dismutase compare
PFLU_RS13580 -1.5 -4.1 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS02490 -1.5 -8.3 phosphoserine phosphatase SerB compare
PFLU_RS13295 -1.4 -6.8 HAMP domain-containing protein compare
PFLU_RS26660 -1.4 -3.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS31200 -1.4 -4.4 hypothetical protein compare
PFLU_RS18530 -1.3 -3.1 DNA translocase FtsK compare
PFLU_RS08660 -1.3 -2.3 heme exporter protein CcmD compare
PFLU_RS08105 -1.3 -5.4 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS18735 -1.3 -1.6 hypothetical protein compare
PFLU_RS16410 -1.3 -9.6 glycogen synthase GlgA compare
PFLU_RS13010 -1.2 -4.2 Fe-S biogenesis protein NfuA compare
PFLU_RS25645 -1.2 -2.2 acetolactate synthase small subunit compare
PFLU_RS27640 -1.2 -1.7 alpha/beta fold hydrolase compare
PFLU_RS04835 -1.2 -1.2 hypothetical protein compare
PFLU_RS08410 -1.2 -5.3 HTH-type transcriptional regulator CysB compare
PFLU_RS05250 -1.2 -3.4 elongation factor 4 compare
PFLU_RS15200 -1.2 -2.5 ABC transporter substrate-binding protein compare
PFLU_RS29065 -1.2 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS04490 -1.1 -3.3 hypoxanthine-guanine phosphoribosyltransferase compare
PFLU_RS12450 -1.1 -6.7 cyclic peptide export ABC transporter compare
PFLU_RS16435 -1.1 -6.7 glycogen debranching protein GlgX compare
PFLU_RS13795 -1.1 -2.6 hypothetical protein compare
PFLU_RS14550 -1.1 -4.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS31490 -1.1 -1.3 hypothetical protein compare
PFLU_RS18885 -1.1 -1.4 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS31310 -1.1 -1.8 phage tail protein compare
PFLU_RS07685 -1.1 -2.0 transcriptional repressor LexA compare
PFLU_RS09670 -1.1 -1.5 integrating conjugative element protein compare
PFLU_RS13540 -1.1 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS27465 -1.0 -2.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS28325 -1.0 -5.0 energy transducer TonB compare
PFLU_RS23390 -1.0 -1.4 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS22190 -1.0 -1.6 hypothetical protein compare
PFLU_RS25875 -1.0 -3.0 transcription elongation factor GreA compare
PFLU_RS07245 -1.0 -5.1 DegQ family serine endoprotease compare
PFLU_RS01960 -1.0 -1.7 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS19555 -1.0 -1.9 histidine phosphatase family protein compare
PFLU_RS00695 -1.0 -1.5 DUF2789 domain-containing protein compare
PFLU_RS26735 -1.0 -4.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS00440 -1.0 -7.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS08190 -1.0 -7.3 polysaccharide biosynthesis protein compare
PFLU_RS20290 -1.0 -1.7 integration host factor subunit alpha compare
PFLU_RS19170 -1.0 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS28965 -1.0 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS25750 -1.0 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS08185 -0.9 -5.3 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS28535 -0.9 -7.3 dihydroxy-acid dehydratase compare
PFLU_RS04075 -0.9 -1.4 hypothetical protein compare
PFLU_RS25640 -0.9 -6.3 ketol-acid reductoisomerase compare
PFLU_RS29400 -0.9 -1.7 DUF1127 domain-containing protein compare
PFLU_RS05690 -0.9 -1.2 Grx4 family monothiol glutaredoxin compare
PFLU_RS08165 -0.9 -1.1 acyl carrier protein compare
PFLU_RS05880 -0.9 -3.2 CinA family protein compare
PFLU_RS13300 -0.9 -2.3 DNA-directed RNA polymerase sigma-70 factor compare
PFLU_RS04315 -0.9 -2.1 rod shape-determining protein MreD compare
PFLU_RS30530 -0.9 -4.0 acetyltransferase compare
PFLU_RS24085 -0.9 -2.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS13475 -0.9 -6.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS02990 -0.9 -2.9 precorrin-3B C(17)-methyltransferase compare
PFLU_RS20330 -0.9 -2.0 cold-shock protein compare
PFLU_RS28645 -0.9 -6.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS17450 -0.9 -4.1 carboxynorspermidine decarboxylase compare
PFLU_RS08505 -0.9 -3.3 protease HtpX compare
PFLU_RS19665 -0.9 -0.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS16300 -0.9 -3.1 hypothetical protein compare
PFLU_RS21215 -0.8 -1.7 YheU family protein compare
PFLU_RS16425 -0.8 -5.9 malto-oligosyltrehalose synthase compare
PFLU_RS04150 -0.8 -3.2 DUF1043 family protein compare
PFLU_RS20095 -0.8 -3.3 glyoxalase compare
PFLU_RS13715 -0.8 -1.5 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS31645 -0.8 -2.8 hypothetical protein compare
PFLU_RS01095 -0.8 -1.3 ribbon-helix-helix protein, CopG family compare
PFLU_RS24305 -0.8 -1.1 antibiotic biosynthesis monooxygenase compare
PFLU_RS07215 -0.8 -2.6 hypothetical protein compare
PFLU_RS08125 -0.8 -1.9 integration host factor subunit beta compare
PFLU_RS07805 -0.8 -6.2 transaldolase compare
PFLU_RS22070 -0.8 -3.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS28655 -0.8 -5.6 HAD family hydrolase compare
PFLU_RS29095 -0.8 -6.9 polyphosphate kinase 1 compare
PFLU_RS02825 -0.7 -1.3 phosphate starvation-inducible protein PsiF compare
PFLU_RS30030 -0.7 -0.9 membrane protein compare
PFLU_RS07275 -0.7 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS11885 -0.7 -1.4 type II secretion system protein M compare
PFLU_RS30160 -0.7 -1.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS13640 -0.7 -2.0 isochorismatase family protein compare
PFLU_RS30525 -0.7 -4.8 SDR family oxidoreductase compare
PFLU_RS04070 -0.7 -1.9 peptide chain release factor 3 compare
PFLU_RS03755 -0.7 -4.9 PDZ domain-containing protein compare
PFLU_RS06320 -0.7 -1.7 OmpH family outer membrane protein compare
PFLU_RS30985 -0.7 -2.1 hypothetical protein compare
PFLU_RS30555 -0.7 -1.0 hypothetical protein compare
PFLU_RS16510 -0.7 -2.6 thiol-disulfide oxidoreductase DCC family protein compare
PFLU_RS04385 -0.7 -4.1 RNase adapter RapZ compare
PFLU_RS24095 -0.7 -1.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS21570 -0.7 -2.1 exonuclease compare
PFLU_RS11475 -0.7 -1.0 histidine kinase compare
PFLU_RS24300 -0.7 -1.8 hypothetical protein compare
PFLU_RS31495 -0.7 -2.8 hypothetical protein compare
PFLU_RS02765 -0.7 -1.8 HupE/UreJ family protein compare
PFLU_RS08160 -0.7 -3.6 sugar transferase compare
PFLU_RS10975 -0.7 -2.7 FAD-binding oxidoreductase compare
PFLU_RS02370 -0.7 -4.2 glycosyltransferase compare
PFLU_RS01955 -0.7 -3.3 DUF971 domain-containing protein compare
PFLU_RS12975 -0.7 -1.8 DUF934 domain-containing protein compare
PFLU_RS18080 -0.7 -1.7 helix-turn-helix transcriptional regulator compare
PFLU_RS16320 -0.7 -2.5 DNA adenine methylase compare
PFLU_RS11525 -0.7 -2.2 GntR family transcriptional regulator compare
PFLU_RS18015 -0.7 -2.4 energy transducer TonB compare
PFLU_RS01670 -0.6 -3.3 protein-export chaperone SecB compare
PFLU_RS01645 -0.6 -4.3 S41 family peptidase compare
PFLU_RS13370 -0.6 -1.3 DUF2790 domain-containing protein compare
PFLU_RS24930 -0.6 -2.1 hypothetical protein compare
PFLU_RS22740 -0.6 -2.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS25740 -0.6 -3.0 polynucleotide adenylyltransferase PcnB compare
PFLU_RS08670 -0.6 -2.1 heme lyase CcmF/NrfE family subunit compare
PFLU_RS00535 -0.6 -1.3 DUF1127 domain-containing protein compare
PFLU_RS30630 -0.6 -1.2 hypothetical protein compare
PFLU_RS21260 -0.6 -3.0 DUF3509 domain-containing protein compare
PFLU_RS25205 -0.6 -2.6 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS03575 -0.6 -1.4 hypothetical protein compare
PFLU_RS15410 -0.6 -1.0 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS30795 -0.6 -3.0 tail fiber domain-containing protein compare
PFLU_RS29550 -0.6 -3.6 ATP-dependent DNA helicase RecG compare
PFLU_RS30790 -0.6 -1.6 hypothetical protein compare
PFLU_RS14305 -0.6 -1.5 sensor histidine kinase compare
PFLU_RS19420 -0.6 -2.5 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS11980 -0.6 -2.7 precorrin-6A synthase (deacetylating) compare
PFLU_RS30520 -0.6 -2.6 ketoacyl-ACP synthase III compare
PFLU_RS08180 -0.6 -2.5 ketoacyl-ACP synthase III compare
PFLU_RS00065 -0.6 -3.3 lysophospholipid acyltransferase compare
PFLU_RS17455 -0.6 -2.8 saccharopine dehydrogenase family protein compare
PFLU_RS26930 -0.6 -2.2 DUF2796 domain-containing protein compare
PFLU_RS22520 -0.6 -1.7 GntR family transcriptional regulator compare
PFLU_RS16285 -0.6 -2.2 hypothetical protein compare
PFLU_RS02625 -0.6 -4.1 ribonuclease R compare
PFLU_RS22770 -0.6 -2.7 DUF2784 domain-containing protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sucrose in Pseudomonas fluorescens SBW25-INTG

For stress Sucrose across organisms