Experiment set11IT033 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 20mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5665 -6.2 -4.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5666 -5.8 -4.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_5115 -5.4 -5.3 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_6 -5.2 -3.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5112 -5.0 -3.4 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_2880 -4.4 -16.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5116 -4.3 -8.5 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
Pf1N1B4_5113 -4.3 -5.9 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_15 -4.3 -5.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1626 -4.2 -9.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4040 -4.2 -4.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1627 -4.2 -6.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_4029 -4.2 -4.9 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3697 -4.0 -12.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1534 -3.9 -21.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_600 -3.9 -8.8 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_742 -3.8 -11.2 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1533 -3.8 -12.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2545 -3.7 -16.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1624 -3.7 -10.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1831 -3.6 -12.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1408 -3.6 -4.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2547 -3.6 -4.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1535 -3.6 -5.6 hypothetical protein compare
Pf1N1B4_2338 -3.5 -10.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2303 -3.5 -13.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2384 -3.5 -11.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1315 -3.4 -8.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3812 -3.3 -10.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4028 -3.3 -5.2 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_58 -3.2 -6.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1307 -3.2 -3.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3506 -3.2 -10.9 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2879 -3.2 -9.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_4039 -3.2 -8.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2549 -3.1 -9.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2850 -3.1 -10.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1434 -3.1 -6.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2858 -3.1 -13.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3153 -3.1 -3.4 hypothetical protein compare
Pf1N1B4_1830 -3.0 -9.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1610 -3.0 -5.3 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2526 -3.0 -14.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_847 -2.9 -7.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2282 -2.9 -10.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_12 -2.9 -6.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2010 -2.8 -6.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1611 -2.8 -5.6 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2112 -2.8 -13.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_5224 -2.8 -2.9 tRNA-Arg-CCT compare
Pf1N1B4_2878 -2.8 -9.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_762 -2.7 -8.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2272 -2.7 -5.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1067 -2.7 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_350 -2.7 -6.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1565 -2.7 -5.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_4035 -2.7 -2.9 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3081 -2.7 -17.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2105 -2.6 -3.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4065 -2.6 -6.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1617 -2.6 -8.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2009 -2.6 -6.4 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_3501 -2.5 -7.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_2280 -2.5 -9.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1024 -2.4 -4.8 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_327 -2.4 -2.5 hypothetical protein compare
Pf1N1B4_4038 -2.3 -2.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2011 -2.3 -9.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5925 -2.2 -8.8 hypothetical protein compare
Pf1N1B4_2859 -2.2 -11.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1 -2.2 -2.2 Colicin V production protein compare
Pf1N1B4_5926 -2.1 -9.6 hypothetical protein compare
Pf1N1B4_1679 -2.1 -2.4 Membrane-fusion protein compare
Pf1N1B4_5483 -2.1 -2.4 hypothetical protein compare
Pf1N1B4_2337 -2.1 -4.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5619 -2.1 -2.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_2548 -2.0 -4.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2884 -2.0 -5.7 Paraquat-inducible protein A compare
Pf1N1B4_2486 -1.9 -2.4 hypothetical protein compare
Pf1N1B4_2734 -1.9 -2.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_2794 -1.9 -3.3 FIG00953595: hypothetical protein compare
Pf1N1B4_188 -1.9 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_27 -1.8 -3.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_1906 -1.8 -4.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2283 -1.8 -2.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_275 -1.8 -1.7 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2114 -1.7 -4.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2380 -1.7 -9.0 Cytochrome B561 compare
Pf1N1B4_3833 -1.7 -6.7 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5659 -1.7 -10.4 NfuA Fe-S protein maturation compare
Pf1N1B4_718 -1.7 -5.9 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_717 -1.7 -6.4 Iron-regulated protein A precursor compare
Pf1N1B4_2381 -1.7 -8.7 Protein yceI precursor compare
Pf1N1B4_2456 -1.6 -3.2 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_3143 -1.6 -3.3 RecA protein compare
Pf1N1B4_3518 -1.6 -1.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_932 -1.6 -2.0 FIG00963370: hypothetical protein compare
Pf1N1B4_4041 -1.6 -2.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_3782 -1.6 -2.5 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_3991 -1.6 -2.6 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_3241 -1.6 -3.2 hypothetical protein compare
Pf1N1B4_675 -1.6 -3.1 hypothetical protein compare
Pf1N1B4_3485 -1.6 -2.9 hypothetical protein compare
Pf1N1B4_652 -1.6 -8.0 Sensory box histidine kinase compare
Pf1N1B4_5833 -1.5 -2.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_3468 -1.5 -2.1 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_4851 -1.5 -2.0 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_5420 -1.5 -2.6 hypothetical protein compare
Pf1N1B4_345 -1.5 -1.5 Integration host factor beta subunit compare
Pf1N1B4_683 -1.4 -4.4 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1668 -1.4 -4.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_5476 -1.4 -2.3 hypothetical protein compare
Pf1N1B4_602 -1.4 -2.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_2273 -1.4 -3.1 hypothetical protein compare
Pf1N1B4_1475 -1.4 -4.4 FIG00962376: hypothetical protein compare
Pf1N1B4_716 -1.4 -2.6 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_2853 -1.4 -1.7 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_1625 -1.4 -1.9 FIG00956267: hypothetical protein compare
Pf1N1B4_2886 -1.4 -6.7 Paraquat-inducible protein B compare
Pf1N1B4_1159 -1.4 -3.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_5278 -1.4 -2.2 hypothetical protein compare
Pf1N1B4_1057 -1.4 -1.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2209 -1.4 -6.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2085 -1.3 -2.5 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_5924 -1.3 -4.7 hypothetical protein compare
Pf1N1B4_5899 -1.3 -1.9 FIG00954746: hypothetical protein compare
Pf1N1B4_769 -1.3 -4.7 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_339 -1.3 -1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3906 -1.2 -2.0 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_115 -1.2 -1.8 Membrane protein mosC compare
Pf1N1B4_476 -1.2 -2.6 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_5032 -1.2 -3.4 Hypothetical protein PA2244 (similar to DNA topoisomerase IB, but possibly involved in glycosyl-transfer) compare
Pf1N1B4_403 -1.2 -1.8 FIG00965925: hypothetical protein compare
Pf1N1B4_3325 -1.2 -1.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_430 -1.2 -2.5 hypothetical protein compare
Pf1N1B4_2334 -1.2 -2.4 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_538 -1.2 -1.1 hypothetical protein compare
Pf1N1B4_1566 -1.2 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_4845 -1.2 -2.4 Xylulose kinase (EC 2.7.1.17) compare
Pf1N1B4_5383 -1.2 -6.3 hypothetical protein compare
Pf1N1B4_2412 -1.2 -2.3 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_1279 -1.1 -2.1 Flp pilus assembly protein TadB compare
Pf1N1B4_4331 -1.1 -2.0 Transporter, LysE family compare
Pf1N1B4_4145 -1.1 -1.4 hypothetical protein compare
Pf1N1B4_1615 -1.1 -2.7 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_1462 -1.1 -6.9 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_5989 -1.1 -1.6 FIG067310: hypothetical protein compare
Pf1N1B4_5724 -1.1 -3.0 High-affinity iron permease compare
Pf1N1B4_578 -1.1 -1.9 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3093 -1.1 -2.0 Outer membrane protein H precursor compare
Pf1N1B4_511 -1.1 -2.7 hypothetical protein compare
Pf1N1B4_2733 -1.1 -2.5 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_475 -1.1 -3.5 ABC-type multidrug transport system, permease component compare
Pf1N1B4_2491 -1.1 -1.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_1236 -1.1 -4.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3927 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_1869 -1.1 -3.9 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_4835 -1.1 -2.1 Carbon starvation protein A compare
Pf1N1B4_2885 -1.1 -3.9 Paraquat-inducible protein A compare
Pf1N1B4_1234 -1.1 -2.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_6041 -1.1 -1.1 Carbon storage regulator compare
Pf1N1B4_2377 -1.0 -3.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2490 -1.0 -3.8 Biotin synthesis protein BioC compare
Pf1N1B4_3078 -1.0 -2.1 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_777 -1.0 -5.3 Membrane protein glpM compare
Pf1N1B4_4297 -1.0 -2.2 FIG00966599: hypothetical protein compare
Pf1N1B4_2706 -1.0 -1.7 FIG00954871: hypothetical protein compare
Pf1N1B4_1328 -1.0 -2.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_5013 -1.0 -2.2 Cointegrate resolution protein T compare
Pf1N1B4_5509 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_5829 -1.0 -2.3 FIG005107: hypothetical protein compare
Pf1N1B4_2421 -1.0 -2.1 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_3536 -1.0 -2.3 SelT/selW/selH selenoprotein domain compare
Pf1N1B4_5507 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_629 -1.0 -1.3 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_4055 -1.0 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_2339 -1.0 -1.2 COG1872 compare
Pf1N1B4_2042 -1.0 -3.3 Phosphate regulon metal ion transporter containing CBS domains compare
Pf1N1B4_3451 -0.9 -2.5 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_4659 -0.9 -2.0 Putative outer membrane lipoprotein compare
Pf1N1B4_3006 -0.9 -3.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_4850 -0.9 -2.8 Various polyols ABC transporter, periplasmic substrate-binding protein compare
Pf1N1B4_2851 -0.9 -1.0 hypothetical protein compare
Pf1N1B4_4848 -0.9 -3.2 Various polyols ABC transporter, permease component 2 compare
Pf1N1B4_5777 -0.9 -2.0 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_2036 -0.9 -3.4 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_722 -0.9 -1.3 SAM-dependent methyltransferases compare
Pf1N1B4_1235 -0.9 -3.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_5279 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_603 -0.9 -2.3 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2160 -0.9 -2.6 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf1N1B4_1389 -0.9 -1.8 Lysine decarboxylase family compare
Pf1N1B4_846 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_304 -0.9 -1.6 Deoxyribonuclease TatD compare
Pf1N1B4_485 -0.9 -1.7 L-lysine permease compare
Pf1N1B4_5972 -0.9 -1.4 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_4352 -0.9 -2.7 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_1653 -0.9 -3.2 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_2527 -0.9 -4.1 ApaG protein compare
Pf1N1B4_4957 -0.9 -1.2 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms