Experiment set11IT032 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 5mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5113 -6.6 -4.4 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_1 -6.0 -3.2 Colicin V production protein compare
Pf1N1B4_899 -5.7 -2.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_5666 -5.6 -3.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_3785 -5.5 -2.2 FOG: Ankyrin repeat compare
Pf1N1B4_2851 -5.2 -2.5 hypothetical protein compare
Pf1N1B4_600 -5.1 -6.0 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_6 -5.1 -3.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5483 -4.9 -2.7 hypothetical protein compare
Pf1N1B4_15 -4.9 -3.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2005 -4.9 -2.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_5224 -4.8 -3.7 tRNA-Arg-CCT compare
Pf1N1B4_2548 -4.6 -3.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1533 -4.5 -8.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_4038 -4.4 -2.6 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2880 -4.4 -15.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1565 -4.4 -3.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1534 -4.4 -23.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1067 -4.4 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_3518 -4.3 -2.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1408 -4.1 -3.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2384 -4.0 -13.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_58 -4.0 -8.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_350 -4.0 -9.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_846 -4.0 -1.3 hypothetical protein compare
Pf1N1B4_5665 -3.9 -5.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5115 -3.9 -4.6 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_3697 -3.9 -6.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_3501 -3.9 -8.0 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_1627 -3.9 -5.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_3812 -3.9 -10.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2272 -3.9 -5.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2303 -3.8 -14.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2009 -3.8 -6.7 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1625 -3.7 -5.0 FIG00956267: hypothetical protein compare
Pf1N1B4_2338 -3.7 -10.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2545 -3.7 -16.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2850 -3.6 -8.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4039 -3.6 -8.7 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1831 -3.6 -12.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_4035 -3.6 -3.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2547 -3.6 -4.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1024 -3.5 -7.6 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_1610 -3.5 -5.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1626 -3.4 -8.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3074 -3.4 -2.8 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_1781 -3.4 -2.1 hypothetical protein compare
Pf1N1B4_2879 -3.3 -8.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1315 -3.2 -7.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_742 -3.2 -9.0 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_3328 -3.2 -2.5 Rhodanese-like domain protein compare
Pf1N1B4_1511 -3.2 -2.7 FIG027190: Putative transmembrane protein compare
Pf1N1B4_5116 -3.2 -5.8 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
Pf1N1B4_1472 -3.2 -1.3 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_762 -3.1 -8.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3906 -3.1 -3.6 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3081 -3.1 -19.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2526 -3.1 -14.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4030 -3.1 -2.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1234 -3.1 -5.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_5898 -3.0 -3.8 hypothetical protein compare
Pf1N1B4_3143 -3.0 -4.9 RecA protein compare
Pf1N1B4_847 -3.0 -7.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2283 -2.9 -1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1434 -2.9 -6.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2282 -2.9 -9.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4320 -2.9 -3.5 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_602 -2.9 -3.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_4851 -2.9 -2.3 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_4029 -2.8 -3.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2112 -2.8 -11.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_882 -2.8 -3.5 carbonic anhydrase, family 3 compare
Pf1N1B4_5926 -2.8 -8.7 hypothetical protein compare
Pf1N1B4_1624 -2.8 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2858 -2.8 -10.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2010 -2.8 -5.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_4065 -2.8 -6.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_5925 -2.7 -9.4 hypothetical protein compare
Pf1N1B4_2004 -2.7 -2.1 putative membrane protein compare
Pf1N1B4_1830 -2.7 -9.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1617 -2.7 -9.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2421 -2.6 -3.3 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_3613 -2.6 -2.6 hypothetical protein compare
Pf1N1B4_3506 -2.6 -6.0 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2337 -2.5 -5.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5699 -2.5 -2.3 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_1057 -2.5 -3.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1668 -2.5 -4.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2377 -2.5 -7.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_606 -2.4 -2.1 Iron siderophore sensor protein compare
Pf1N1B4_5560 -2.4 -2.1 hypothetical protein compare
Pf1N1B4_339 -2.4 -1.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2612 -2.4 -3.7 Putative transport protein compare
Pf1N1B4_4041 -2.3 -2.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2878 -2.3 -8.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1653 -2.3 -5.0 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_2490 -2.3 -6.1 Biotin synthesis protein BioC compare
Pf1N1B4_3408 -2.3 -2.8 Transcriptional regulator, AraC family compare
Pf1N1B4_5924 -2.3 -4.8 hypothetical protein compare
Pf1N1B4_1307 -2.2 -1.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1611 -2.2 -3.5 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3368 -2.2 -1.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_12 -2.2 -4.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2011 -2.2 -6.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2352 -2.2 -5.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1535 -2.2 -3.1 hypothetical protein compare
Pf1N1B4_2885 -2.2 -4.3 Paraquat-inducible protein A compare
Pf1N1B4_5112 -2.2 -2.5 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_4408 -2.2 -1.8 two-component response regulator compare
Pf1N1B4_327 -2.2 -2.0 hypothetical protein compare
Pf1N1B4_5330 -2.1 -1.7 hypothetical protein compare
Pf1N1B4_974 -2.1 -3.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_717 -2.1 -4.6 Iron-regulated protein A precursor compare
Pf1N1B4_5111 -2.1 -3.5 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf1N1B4_6045 -2.0 -2.3 CigR (Putative inner membrane protein) compare
Pf1N1B4_1056 -2.0 -4.0 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf1N1B4_2549 -2.0 -5.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2381 -2.0 -8.0 Protein yceI precursor compare
Pf1N1B4_4043 -2.0 -3.0 Type II and III secretion system family protein compare
Pf1N1B4_4472 -2.0 -2.6 Transcriptional regulator, ArsR family compare
Pf1N1B4_2380 -2.0 -8.0 Cytochrome B561 compare
Pf1N1B4_4745 -2.0 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_3485 -2.0 -2.3 hypothetical protein compare
Pf1N1B4_2854 -1.9 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_4040 -1.9 -2.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3356 -1.9 -1.5 Cyclic nucleotide-binding protein compare
Pf1N1B4_2280 -1.9 -5.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1750 -1.9 -2.3 Death on curing protein, Doc toxin compare
Pf1N1B4_3468 -1.9 -1.1 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_364 -1.9 -3.2 Rhodanese domain protein UPF0176 compare
Pf1N1B4_718 -1.9 -6.3 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_652 -1.9 -7.2 Sensory box histidine kinase compare
Pf1N1B4_5284 -1.9 -2.1 hypothetical protein compare
Pf1N1B4_3446 -1.9 -1.8 Putative GTPases (G3E family) compare
Pf1N1B4_5709 -1.8 -2.7 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_5382 -1.8 -2.1 hypothetical protein compare
Pf1N1B4_3802 -1.8 -1.7 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_3993 -1.8 -2.5 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_777 -1.8 -5.2 Membrane protein glpM compare
Pf1N1B4_2488 -1.8 -5.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_5283 -1.7 -1.4 hypothetical protein compare
Pf1N1B4_5768 -1.7 -1.7 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_2036 -1.7 -2.6 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_3002 -1.7 -2.1 hypothetical protein compare
Pf1N1B4_5278 -1.7 -1.6 hypothetical protein compare
Pf1N1B4_345 -1.7 -1.1 Integration host factor beta subunit compare
Pf1N1B4_3936 -1.7 -2.3 Transcriptional regulator, LysR family compare
Pf1N1B4_2859 -1.7 -7.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3153 -1.7 -2.0 hypothetical protein compare
Pf1N1B4_1235 -1.7 -4.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_4897 -1.7 -1.9 Transcriptional regulator, LysR family compare
Pf1N1B4_4480 -1.7 -3.0 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Pf1N1B4_1872 -1.7 -5.0 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_399 -1.7 -2.2 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_1756 -1.6 -3.0 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_2244 -1.6 -1.5 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_3445 -1.6 -2.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_5591 -1.6 -1.2 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_1054 -1.6 -2.2 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_4259 -1.6 -1.8 hypothetical protein compare
Pf1N1B4_876 -1.6 -2.5 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_3451 -1.6 -2.6 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_2224 -1.6 -1.6 FIG00953390: hypothetical protein compare
Pf1N1B4_751 -1.6 -1.4 hypothetical protein compare
Pf1N1B4_236 -1.6 -1.8 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_4879 -1.6 -2.1 Chromosome segregation ATPases compare
Pf1N1B4_4352 -1.6 -1.8 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_5619 -1.6 -1.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_6034 -1.5 -3.1 D-ribose ABC transporter, ATPase component RbsA (from data) compare
Pf1N1B4_1370 -1.5 -1.0 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_2568 -1.5 -2.3 Translation elongation factor Tu compare
Pf1N1B4_5531 -1.5 -2.2 hypothetical protein compare
Pf1N1B4_4717 -1.5 -1.2 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_709 -1.5 -2.5 FIG00953860: hypothetical protein compare
Pf1N1B4_554 -1.5 -2.7 Putative threonine efflux protein compare
Pf1N1B4_1276 -1.5 -1.6 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_1746 -1.5 -4.9 GTP-binding protein compare
Pf1N1B4_122 -1.5 -1.6 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_349 -1.5 -3.0 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_4568 -1.5 -1.2 FIG00793915: hypothetical protein compare
Pf1N1B4_348 -1.5 -2.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2857 -1.5 -2.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3217 -1.5 -2.1 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Pf1N1B4_1475 -1.5 -4.3 FIG00962376: hypothetical protein compare
Pf1N1B4_3935 -1.5 -2.4 Major facilitator family transporter compare
Pf1N1B4_1887 -1.5 -1.9 probable exported protein YPO0432 compare
Pf1N1B4_556 -1.4 -3.0 Gluconate permease compare
Pf1N1B4_2886 -1.4 -6.5 Paraquat-inducible protein B compare
Pf1N1B4_2491 -1.4 -2.3 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_5659 -1.4 -5.5 NfuA Fe-S protein maturation compare
Pf1N1B4_4612 -1.4 -1.3 FIG00954117: hypothetical protein compare
Pf1N1B4_5498 -1.4 -1.6 hypothetical protein compare
Pf1N1B4_4801 -1.4 -2.2 Polysaccharide deacetylase compare
Pf1N1B4_1566 -1.4 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5266 -1.4 -1.2 hypothetical protein compare
Pf1N1B4_2105 -1.4 -1.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4028 -1.4 -2.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4835 -1.4 -1.5 Carbon starvation protein A compare
Pf1N1B4_749 -1.4 -1.7 hypothetical protein compare
Pf1N1B4_3833 -1.4 -5.0 Major porin and structural outer membrane porin OprF compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms