Experiment set11IT032 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 5mM

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_3325 +2.0 3.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1212 +1.8 5.7 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_5249 +1.7 3.8 Outer membrane protein A precursor compare
Pf1N1B4_1180 +1.7 3.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_2154 +1.6 3.2 hypothetical protein compare
Pf1N1B4_1463 +1.5 7.8 hypothetical protein compare
Pf1N1B4_2232 +1.4 4.0 Ferric iron ABC transporter, iron-binding protein compare
Pf1N1B4_4602 +1.4 2.3 Transcriptional regulators, LysR family compare
Pf1N1B4_644 +1.3 2.0 Cold shock protein CspC compare
Pf1N1B4_1464 +1.3 6.5 Glycosyl transferase compare
Pf1N1B4_4132 +1.3 2.2 Mobile element protein compare
Pf1N1B4_4644 +1.3 2.3 hypothetical protein compare
Pf1N1B4_2054 +1.3 2.7 FIG00964469: hypothetical protein compare
Pf1N1B4_2774 +1.3 2.1 hypothetical protein compare
Pf1N1B4_2820 +1.3 2.4 FIG00953647: hypothetical protein compare
Pf1N1B4_4874 +1.3 1.8 hypothetical protein compare
Pf1N1B4_4123 +1.3 1.4 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_3594 +1.2 1.6 Flagellin protein FlaA compare
Pf1N1B4_855 +1.2 3.9 FIG021952: putative membrane protein compare
Pf1N1B4_2368 +1.2 3.9 Malonate transporter, MadL subunit compare
Pf1N1B4_3657 +1.2 2.8 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_1465 +1.2 8.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_5917 +1.2 2.6 Multimeric flavodoxin WrbA compare
Pf1N1B4_4201 +1.2 3.4 Transcriptional regulator, LysR family compare
Pf1N1B4_1991 +1.1 2.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf1N1B4_1334 +1.1 1.6 FIG00955840: hypothetical protein compare
Pf1N1B4_4438 +1.1 2.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_4872 +1.1 1.7 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_114 +1.1 3.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_4154 +1.1 2.4 Transcriptional regulator, AraC family compare
Pf1N1B4_4250 +1.1 1.4 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_5652 +1.1 2.3 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4368 +1.1 3.8 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_441 +1.1 1.9 hypothetical protein compare
Pf1N1B4_841 +1.1 3.0 ABC-type sugar transport systems, ATPase components compare
Pf1N1B4_5294 +1.1 1.7 hypothetical protein compare
Pf1N1B4_3413 +1.0 1.5 Transcriptional regulator, LysR family compare
Pf1N1B4_2071 +1.0 1.9 Protein phosphatase ImpM compare
Pf1N1B4_157 +1.0 1.8 ThiJ/PfpI family protein compare
Pf1N1B4_1527 +1.0 2.2 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_4969 +1.0 1.2 FIG00956189: hypothetical protein compare
Pf1N1B4_1683 +1.0 1.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_1248 +1.0 2.1 Probable short-chain dehydrogenase compare
Pf1N1B4_3141 +1.0 2.1 FIG00959768: hypothetical protein compare
Pf1N1B4_3836 +1.0 2.1 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_2401 +1.0 0.7 Lipoprotein, putative compare
Pf1N1B4_5718 +1.0 1.8 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_1461 +1.0 2.7 Protein fixF compare
Pf1N1B4_5649 +1.0 1.7 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_188 +1.0 1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5824 +1.0 2.2 Na(+) H(+) antiporter subunit D compare
Pf1N1B4_1457 +1.0 5.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_5897 +1.0 2.6 FIG00963512: hypothetical protein compare
Pf1N1B4_448 +1.0 1.0 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_1105 +1.0 2.0 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_5809 +1.0 3.2 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf1N1B4_773 +0.9 3.7 ABC transporter for L-asparagine and L-glutamate, permease subunit 2 (from data) compare
Pf1N1B4_5275 +0.9 1.5 hypothetical protein compare
Pf1N1B4_1458 +0.9 4.2 Probable transcription regulator Mig-14 compare
Pf1N1B4_4855 +0.9 1.4 Response regulator compare
Pf1N1B4_4870 +0.9 1.7 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_3582 +0.9 1.7 C-methyltransferase compare
Pf1N1B4_115 +0.9 2.3 Membrane protein mosC compare
Pf1N1B4_2958 +0.9 1.4 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_1660 +0.9 2.0 FIG00953324: hypothetical protein compare
Pf1N1B4_5880 +0.9 2.0 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_5077 +0.9 1.6 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_4601 +0.9 1.8 Streptothricin acetyltransferase, Streptomyces lavendulae type compare
Pf1N1B4_2924 +0.9 1.4 FIG00955589: hypothetical protein compare
Pf1N1B4_108 +0.9 2.4 FIG00954456: hypothetical protein compare
Pf1N1B4_29 +0.9 1.1 FIG00967200: hypothetical protein compare
Pf1N1B4_1687 +0.9 3.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Pf1N1B4_4156 +0.9 1.6 putative secreted protein compare
Pf1N1B4_2679 +0.9 2.1 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_5995 +0.9 1.5 Transporter, MFS superfamily compare
Pf1N1B4_2417 +0.9 2.4 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_5864 +0.9 1.5 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_118 +0.9 1.9 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_3619 +0.9 3.1 Flagellar biosynthesis protein FliQ compare
Pf1N1B4_2145 +0.9 0.8 Translation initiation inhibitor compare
Pf1N1B4_4611 +0.9 2.4 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_5004 +0.9 2.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_4459 +0.9 2.8 Thermostable hemolysin delta-VPH compare
Pf1N1B4_479 +0.9 1.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_4648 +0.9 1.5 transcriptional regulator, MerR family compare
Pf1N1B4_2974 +0.9 2.2 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf1N1B4_1770 +0.9 2.5 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Pf1N1B4_5860 +0.9 2.0 Two-component response regulator compare
Pf1N1B4_4670 +0.9 2.9 Sensory box/GGDEF family protein compare
Pf1N1B4_3917 +0.9 2.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_4688 +0.9 2.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2370 +0.8 2.9 Malonate utilization transcriptional regulator compare
Pf1N1B4_2411 +0.8 1.6 FIG00953568: hypothetical protein compare
Pf1N1B4_5119 +0.8 2.2 Putative hemagglutinin/hemolysin-related protein compare
Pf1N1B4_616 +0.8 1.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2623 +0.8 3.2 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_4139 +0.8 1.9 Transcriptional regulator, MerR family compare
Pf1N1B4_2651 +0.8 3.3 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_967 +0.8 1.3 hypothetical protein compare
Pf1N1B4_137 +0.8 1.7 Pyoverdine biosynthesis related protein PvdP compare
Pf1N1B4_3362 +0.8 1.4 Multidrug resistance protein B compare
Pf1N1B4_1284 +0.8 2.5 Flp pilus assembly protein TadG compare
Pf1N1B4_5393 +0.8 1.7 hypothetical protein compare
Pf1N1B4_2825 +0.8 1.8 EF hand domain protein compare
Pf1N1B4_2695 +0.8 1.7 Rare lipoprotein A precursor compare
Pf1N1B4_4318 +0.8 1.8 hypothetical protein compare
Pf1N1B4_710 +0.8 1.6 Transporter, LysE family compare
Pf1N1B4_1331 +0.8 2.2 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_2632 +0.8 2.6 FIG003003: hypothetical protein compare
Pf1N1B4_1340 +0.8 1.0 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_4582 +0.8 1.3 hypothetical protein compare
Pf1N1B4_6037 +0.8 1.4 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_2427 +0.8 1.8 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf1N1B4_2707 +0.8 1.4 Putative membrane protein compare
Pf1N1B4_1840 +0.8 3.3 lipoprotein, putative compare
Pf1N1B4_2856 +0.8 1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2083 +0.8 1.8 Uncharacterized protein ImpB compare
Pf1N1B4_228 +0.8 0.9 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_740 +0.8 0.9 Leucyl-tRNA synthetase compare
Pf1N1B4_4571 +0.8 1.5 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_4509 +0.8 1.3 Aldose 1-epimerase compare
Pf1N1B4_545 +0.8 2.5 MadN protein compare
Pf1N1B4_3895 +0.8 1.0 hypothetical protein compare
Pf1N1B4_2674 +0.8 1.4 hypothetical protein compare
Pf1N1B4_1310 +0.8 2.3 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_552 +0.8 2.2 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_5760 +0.8 2.1 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_5056 +0.8 1.6 Uncharacterized glutathione S-transferase-like protein compare
Pf1N1B4_4673 +0.8 1.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_5002 +0.8 2.9 Protein rarD compare
Pf1N1B4_2711 +0.8 1.7 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_733 +0.7 1.0 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5607 +0.7 1.9 C4-dicarboxylate transport protein compare
Pf1N1B4_5589 +0.7 1.8 3-ketoacyl-CoA thiolase (EC 2.3.1.16) compare
Pf1N1B4_4076 +0.7 2.1 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_516 +0.7 1.3 Sensor histidine kinase compare
Pf1N1B4_1914 +0.7 2.3 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_81 +0.7 1.4 Putative sulfate permease compare
Pf1N1B4_3777 +0.7 2.1 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf1N1B4_4175 +0.7 1.7 Universal stress protein family 5 compare
Pf1N1B4_90 +0.7 2.1 Putative outer membrane lipoprotein compare
Pf1N1B4_1721 +0.7 1.2 DNA-binding heavy metal response regulator compare
Pf1N1B4_5618 +0.7 1.6 Excinuclease ABC subunit C compare
Pf1N1B4_5653 +0.7 2.1 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_2727 +0.7 2.1 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) compare
Pf1N1B4_1118 +0.7 1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3981 +0.7 1.3 Predicted carboxypeptidase compare
Pf1N1B4_3722 +0.7 1.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3591 +0.7 3.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_2868 +0.7 2.5 ABC-type hemin transport system, ATPase component compare
Pf1N1B4_2935 +0.7 1.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_4570 +0.7 1.2 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_1339 +0.7 1.1 ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component compare
Pf1N1B4_4335 +0.7 0.9 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_5997 +0.7 1.2 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4604 +0.7 2.4 FMN reductase, NADPH-dependent compare
Pf1N1B4_2150 +0.7 0.7 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_5463 +0.7 0.9 hypothetical protein compare
Pf1N1B4_3985 +0.7 1.4 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_1501 +0.7 2.5 3-oxoacyl-[ACP] synthase compare
Pf1N1B4_1374 +0.7 1.5 HupE-UreJ family metal transporter compare
Pf1N1B4_1613 +0.7 1.3 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_3176 +0.7 1.7 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_5982 +0.7 3.2 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_4370 +0.7 1.5 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 compare
Pf1N1B4_233 +0.7 2.0 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
Pf1N1B4_4305 +0.7 1.6 PUTATIVE METHYLTRANSFERASE compare
Pf1N1B4_2362 +0.7 1.9 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf1N1B4_3365 +0.7 2.0 Sialic acid transporter (permease) NanT compare
Pf1N1B4_407 +0.7 0.9 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_5243 +0.7 1.2 hypothetical protein compare
Pf1N1B4_1279 +0.7 1.6 Flp pilus assembly protein TadB compare
Pf1N1B4_107 +0.7 2.0 FIG00857858: hypothetical protein compare
Pf1N1B4_1545 +0.7 3.8 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_4687 +0.7 3.0 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
Pf1N1B4_3771 +0.7 1.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_78 +0.7 2.1 FIG00956937: hypothetical protein compare
Pf1N1B4_2047 +0.7 1.7 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_3715 +0.7 1.4 Cobalamin synthase compare
Pf1N1B4_2317 +0.7 1.6 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Pf1N1B4_1466 +0.7 1.9 hypothetical protein compare
Pf1N1B4_4112 +0.7 1.8 hypothetical protein compare
Pf1N1B4_4087 +0.7 1.8 MISCELLANEOUS; Unknown compare
Pf1N1B4_3730 +0.7 1.1 Sodium-dependent transporter compare
Pf1N1B4_1456 +0.7 3.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_2392 +0.7 2.1 Cytochrome c556 compare
Pf1N1B4_5951 +0.7 3.3 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf1N1B4_2843 +0.7 2.5 Type IV pilin PilA compare
Pf1N1B4_5099 +0.7 1.7 Proline iminopeptidase (EC 3.4.11.5) compare
Pf1N1B4_5954 +0.7 1.9 hypothetical protein compare
Pf1N1B4_3044 +0.7 1.5 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf1N1B4_2870 +0.7 0.9 Regulator of competence-specific genes compare
Pf1N1B4_5480 +0.6 2.1 hypothetical protein compare
Pf1N1B4_1351 +0.6 2.0 Tabtoxin resistance protein compare
Pf1N1B4_885 +0.6 1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_590 +0.6 3.7 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_4603 +0.6 1.2 hypothetical protein compare
Pf1N1B4_5058 +0.6 1.5 D-galactarate permease compare
Pf1N1B4_5930 +0.6 3.2 Exopolysaccharide production protein ExoZ compare
Pf1N1B4_5863 +0.6 1.7 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms