Experiment set11IT031 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 20mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5115 -6.3 -4.4 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_2547 -5.2 -3.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_5665 -5.2 -8.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5666 -5.2 -6.1 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_6 -5.0 -6.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -4.7 -17.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_15 -4.6 -5.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1533 -4.3 -13.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_4038 -4.3 -4.1 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1408 -4.1 -5.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2272 -4.1 -6.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_350 -4.0 -9.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_600 -3.9 -9.6 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_5113 -3.9 -6.2 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_1534 -3.8 -22.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1626 -3.8 -11.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_742 -3.7 -13.0 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1831 -3.7 -14.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2545 -3.6 -17.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2338 -3.6 -12.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1624 -3.6 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2384 -3.5 -11.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2879 -3.5 -9.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_5116 -3.5 -7.3 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
Pf1N1B4_2303 -3.5 -14.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2850 -3.5 -11.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_58 -3.4 -8.9 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1315 -3.4 -8.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2526 -3.2 -16.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1434 -3.2 -9.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3812 -3.2 -11.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1627 -3.2 -4.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2112 -3.2 -16.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1610 -3.1 -5.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1067 -3.1 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2858 -3.1 -13.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2005 -3.1 -3.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4029 -3.0 -5.9 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2282 -3.0 -10.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3697 -3.0 -10.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_4041 -3.0 -6.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4039 -3.0 -7.7 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1565 -2.9 -5.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2009 -2.9 -7.3 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_12 -2.8 -5.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_762 -2.8 -8.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2548 -2.8 -6.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_4065 -2.8 -7.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1307 -2.7 -3.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5112 -2.7 -3.4 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_3506 -2.7 -7.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_4030 -2.6 -3.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_5619 -2.6 -3.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_4040 -2.6 -2.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1024 -2.6 -6.2 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_3501 -2.6 -9.2 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_2010 -2.6 -7.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_4851 -2.5 -4.1 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_5926 -2.5 -16.4 hypothetical protein compare
Pf1N1B4_1617 -2.4 -8.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5925 -2.4 -12.2 hypothetical protein compare
Pf1N1B4_1668 -2.4 -6.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_3081 -2.4 -16.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1057 -2.4 -4.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1830 -2.4 -8.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2878 -2.4 -9.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1611 -2.3 -5.7 Nitrogen regulation protein NR(I) compare
Pf1N1B4_847 -2.3 -6.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2337 -2.3 -5.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3906 -2.2 -4.3 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_602 -2.2 -5.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_4035 -2.2 -2.3 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_578 -2.2 -4.6 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2549 -2.1 -6.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2011 -2.1 -8.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_3153 -2.1 -3.7 hypothetical protein compare
Pf1N1B4_1234 -2.1 -5.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_275 -2.0 -2.8 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_3833 -2.0 -6.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2859 -2.0 -10.7 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1625 -2.0 -3.8 FIG00956267: hypothetical protein compare
Pf1N1B4_2380 -1.9 -12.2 Cytochrome B561 compare
Pf1N1B4_5224 -1.9 -3.3 tRNA-Arg-CCT compare
Pf1N1B4_4028 -1.8 -3.4 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1535 -1.8 -3.3 hypothetical protein compare
Pf1N1B4_2381 -1.7 -10.9 Protein yceI precursor compare
Pf1N1B4_1679 -1.6 -2.3 Membrane-fusion protein compare
Pf1N1B4_27 -1.6 -3.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_327 -1.6 -3.2 hypothetical protein compare
Pf1N1B4_1619 -1.6 -8.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_974 -1.6 -4.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_2280 -1.5 -6.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4845 -1.5 -3.6 Xylulose kinase (EC 2.7.1.17) compare
Pf1N1B4_4849 -1.5 -3.4 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_2039 -1.5 -3.4 hypothetical protein compare
Pf1N1B4_3143 -1.5 -2.5 RecA protein compare
Pf1N1B4_4299 -1.5 -4.4 sensor histidine kinase compare
Pf1N1B4_1 -1.5 -1.4 Colicin V production protein compare
Pf1N1B4_718 -1.4 -6.3 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_2283 -1.4 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_5509 -1.4 -2.0 hypothetical protein compare
Pf1N1B4_1236 -1.4 -5.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2105 -1.4 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1906 -1.3 -2.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2885 -1.3 -5.8 Paraquat-inducible protein A compare
Pf1N1B4_4850 -1.3 -4.0 Various polyols ABC transporter, periplasmic substrate-binding protein compare
Pf1N1B4_2114 -1.3 -5.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_717 -1.3 -5.8 Iron-regulated protein A precursor compare
Pf1N1B4_2886 -1.3 -8.8 Paraquat-inducible protein B compare
Pf1N1B4_1492 -1.3 -1.8 FIG00959437: hypothetical protein compare
Pf1N1B4_715 -1.3 -6.1 Iron-regulated protein A precursor compare
Pf1N1B4_3518 -1.3 -1.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_652 -1.3 -7.8 Sensory box histidine kinase compare
Pf1N1B4_5383 -1.2 -8.2 hypothetical protein compare
Pf1N1B4_2884 -1.2 -3.7 Paraquat-inducible protein A compare
Pf1N1B4_5650 -1.2 -4.3 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf1N1B4_1566 -1.2 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2209 -1.2 -6.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1462 -1.2 -7.5 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_5659 -1.1 -8.2 NfuA Fe-S protein maturation compare
Pf1N1B4_2851 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_2486 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_4212 -1.1 -2.0 Gfa-like protein compare
Pf1N1B4_2917 -1.1 -6.0 FIG140336: TPR domain protein compare
Pf1N1B4_866 -1.1 -2.5 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_1370 -1.1 -1.8 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_3325 -1.1 -1.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_4847 -1.1 -2.2 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_3768 -1.0 -2.0 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_1235 -1.0 -4.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_3866 -1.0 -2.1 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_769 -1.0 -4.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_5542 -1.0 -3.2 hypothetical protein compare
Pf1N1B4_777 -1.0 -4.9 Membrane protein glpM compare
Pf1N1B4_681 -1.0 -3.8 FOG: GGDEF domain compare
Pf1N1B4_3764 -1.0 -3.0 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_835 -1.0 -2.7 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_5433 -1.0 -3.2 hypothetical protein compare
Pf1N1B4_4485 -1.0 -1.9 membrane protein, putative compare
Pf1N1B4_348 -1.0 -3.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_3396 -1.0 -1.6 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_2783 -1.0 -2.2 Transcription elongation factor GreB-related protein compare
Pf1N1B4_5829 -1.0 -2.0 FIG005107: hypothetical protein compare
Pf1N1B4_3864 -1.0 -3.2 Recombination protein RecR compare
Pf1N1B4_3093 -1.0 -1.8 Outer membrane protein H precursor compare
Pf1N1B4_2854 -1.0 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_5708 -1.0 -2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_5508 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_5584 -0.9 -2.0 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_6024 -0.9 -1.6 FIG00953292: hypothetical protein compare
Pf1N1B4_3627 -0.9 -2.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_5498 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_2031 -0.9 -5.2 Aldose 1-epimerase conserved
Pf1N1B4_2975 -0.9 -1.3 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_1317 -0.9 -1.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_890 -0.9 -2.2 DNA recombination and repair protein RecO compare
Pf1N1B4_2688 -0.9 -3.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_3356 -0.9 -1.7 Cyclic nucleotide-binding protein compare
Pf1N1B4_5991 -0.9 -2.5 Transcriptional regulator, AraC family compare
Pf1N1B4_1153 -0.9 -2.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_106 -0.9 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1366 -0.9 -2.3 FMN-dependent NADH-azoreductase compare
Pf1N1B4_13 -0.9 -2.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_1113 -0.9 -4.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_603 -0.9 -2.2 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_1872 -0.9 -4.9 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_3074 -0.9 -2.3 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_3125 -0.8 -2.6 FIG00954242: hypothetical protein compare
Pf1N1B4_2487 -0.8 -4.2 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_5924 -0.8 -3.1 hypothetical protein compare
Pf1N1B4_3113 -0.8 -5.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_2465 -0.8 -1.8 Two-component response regulator CreB compare
Pf1N1B4_3692 -0.8 -2.8 Chaperone protein HtpG compare
Pf1N1B4_3078 -0.8 -1.8 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_899 -0.8 -1.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_4857 -0.8 -2.9 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_4027 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2004 -0.8 -2.2 putative membrane protein compare
Pf1N1B4_1869 -0.8 -4.0 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_2527 -0.8 -4.6 ApaG protein compare
Pf1N1B4_1403 -0.8 -4.0 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4592 -0.8 -2.1 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_79 -0.8 -2.6 Lactoylglutathione lyase and related lyases compare
Pf1N1B4_2489 -0.8 -2.4 Biotin synthesis protein BioH compare
Pf1N1B4_4478 -0.8 -1.2 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_2048 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_4882 -0.7 -3.2 Transcriptional regulator MexT compare
Pf1N1B4_291 -0.7 -3.9 Major outer membrane lipoprotein I compare
Pf1N1B4_475 -0.7 -3.7 ABC-type multidrug transport system, permease component compare
Pf1N1B4_2441 -0.7 -2.7 Electron transfer flavoprotein, alpha subunit compare
Pf1N1B4_716 -0.7 -1.7 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_1181 -0.7 -2.0 UPF0125 protein yfjF compare
Pf1N1B4_2352 -0.7 -3.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1475 -0.7 -2.5 FIG00962376: hypothetical protein compare
Pf1N1B4_695 -0.7 -2.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_4974 -0.7 -2.9 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_4864 -0.7 -4.4 Multidrug efflux transporter MexF compare
Pf1N1B4_4582 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_846 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_3451 -0.7 -2.8 Aspartokinase (EC 2.7.2.4) compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms