Experiment set11IT026 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_4991 -3.8 -2.6 hypothetical protein compare
Psyr_3008 -3.8 -9.3 Undecaprenyl-diphosphatase compare
Psyr_0951 -3.5 -4.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4340 -3.5 -9.0 phosphomethylpyrimidine kinase, putative compare
Psyr_4740 -3.2 -6.1 thiazole-phosphate synthase compare
Psyr_4580 -3.2 -3.1 anthranilate phosphoribosyltransferase compare
Psyr_1663 -3.1 -3.6 phosphoribosylanthranilate isomerase compare
Psyr_1544 -3.0 -5.3 SirA-like protein compare
Psyr_4203 -2.9 -2.8 SsrA-binding protein compare
Psyr_4686 -2.8 -6.3 8-amino-7-oxononanoate synthase compare
Psyr_1613 -2.8 -5.4 septum site-determining protein MinC compare
Psyr_4683 -2.7 -5.1 dethiobiotin synthase compare
Psyr_4341 -2.5 -6.2 thiamine-phosphate diphosphorylase compare
Psyr_4684 -2.5 -3.7 biotin synthesis protein BioC compare
Psyr_4687 -2.5 -7.8 biotin synthase compare
Psyr_0383 -2.5 -2.9 Twin-arginine translocation protein TatB compare
Psyr_0475 -2.4 -2.8 Protein of unknown function YGGT compare
Psyr_4091 -2.4 -4.8 8-oxo-dGTPase compare
Psyr_0849 -2.3 -10.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_1419 -2.2 -3.9 preQ(0) biosynthesis protein QueC compare
Psyr_0917 -2.1 -10.7 ABC-2 compare
Psyr_0454 -2.1 -5.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0259 -2.0 -4.2 Osmolarity sensor protein envZ compare
Psyr_1373 -2.0 -3.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_1907 -2.0 -3.8 GTP cyclohydrolase I compare
Psyr_3208 -2.0 -2.9 NADH dehydrogenase subunit M compare
Psyr_3419 -1.9 -5.1 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_4634 -1.9 -2.7 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3620 -1.9 -2.6 hypothetical protein compare
Psyr_0493 -1.9 -3.0 CheW-like protein compare
Psyr_0575 -1.7 -3.7 protease FtsH subunit HflC compare
Psyr_0918 -1.7 -10.1 ABC transporter compare
Psyr_1408 -1.7 -3.3 Holliday junction endonuclease RuvC compare
Psyr_5132 -1.7 -3.5 Glucose-inhibited division protein A subfamily compare
Psyr_1751 -1.7 -4.5 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_2980 -1.7 -3.6 UDP-glucose pyrophosphorylase compare
Psyr_1975 -1.6 -2.8 Integrase, catalytic region compare
Psyr_1556 -1.6 -2.4 hypothetical protein compare
Psyr_5133 -1.6 -3.8 tRNA modification GTPase trmE compare
Psyr_0574 -1.6 -4.9 protease FtsH subunit HflK compare
Psyr_4627 -1.6 -2.8 dimethyladenosine transferase compare
Psyr_1747 -1.5 -4.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0826 -1.4 -6.2 glucose-6-phosphate isomerase compare
Psyr_1748 -1.4 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_2462 -1.4 -4.0 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_3610 -1.4 -2.7 GAF compare
Psyr_4884 -1.3 -5.6 Rhodanese-like protein compare
Psyr_4464 -1.3 -1.6 lipoprotein, putative compare
Psyr_0281 -1.3 -2.5 ABC transporter compare
Psyr_2255 -1.2 -2.8 ABC transporter compare
Psyr_3193 -1.2 -2.2 Transcription factor jumonji, jmjC compare
Psyr_1667 -1.2 -5.0 Colicin V production protein compare
Psyr_1227 -1.2 -1.9 Queuosine biosynthesis protein compare
Psyr_2227 -1.2 -2.4 conserved hypothetical protein compare
Psyr_0571 -1.2 -3.0 tRNA isopentenyltransferase compare
Psyr_2095 -1.1 -4.3 Conserved TM helix compare
Psyr_2112 -1.1 -2.1 Protein with unknown function DUF469 compare
Psyr_3728 -1.1 -4.1 hypothetical protein compare
Psyr_0529 -1.1 -3.6 Glycosyl transferase, group 1 compare
Psyr_3954 -1.1 -3.8 GTP-binding protein LepA compare
Psyr_3807 -1.1 -4.3 hypothetical protein compare
Psyr_2346 -1.1 -3.3 conserved hypothetical protein compare
Psyr_0550 -1.1 -4.0 Protein of unknown function UPF0227 compare
Psyr_0215 -1.1 -6.8 Exodeoxyribonuclease III xth compare
Psyr_0034 -1.1 -1.0 tryptophan synthase, beta chain compare
Psyr_2855 -1.0 -2.8 methionine synthase (B12-independent) compare
Psyr_0487 -1.0 -2.1 glutathione synthase compare
Psyr_1934 -1.0 -4.2 conserved hypothetical protein compare
Psyr_0491 -1.0 -2.1 chemotaxis sensory transducer compare
Psyr_3287 -1.0 -1.7 DNA topoisomerase I compare
Psyr_0014 -1.0 -3.0 lipid A biosynthesis acyltransferase compare
Psyr_2833 -1.0 -1.9 CDS compare
Psyr_3581 -1.0 -4.3 ribosomal large subunit pseudouridine synthase B compare
Psyr_1250 -1.0 -3.1 conserved hypothetical protein compare
Psyr_0444 -1.0 -1.3 Malonate decarboxylase delta subunit compare
Psyr_2973 -1.0 -2.2 Glyoxalase I compare
Psyr_2642 -1.0 -2.9 hypothetical protein compare
Psyr_4519 -1.0 -5.0 General substrate transporter:Major facilitator superfamily compare
Psyr_0184 -1.0 -2.6 Protein of unknown function DUF484 compare
Psyr_1779 -0.9 -1.5 hypothetical protein compare
Psyr_3808 -0.9 -1.1 hypothetical protein compare
Psyr_4822 -0.9 -1.8 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_0954 -0.9 -1.6 Protein of unknown function UPF0153 compare
Psyr_1885 -0.9 -1.8 hypothetical protein compare
Psyr_4089 -0.9 -3.8 PAS compare
Psyr_1094 -0.9 -2.6 cold-shock DNA-binding protein family compare
Psyr_2540 -0.9 -1.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2779 -0.9 -2.0 Phage minor tail compare
Psyr_0565 -0.9 -3.5 Protein of unknown function UPF0126 compare
Psyr_0774 -0.9 -2.7 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_0060 -0.9 -3.4 Protein of unknown function DUF513 compare
Psyr_3293 -0.9 -1.5 UspA compare
Psyr_1097 -0.9 -2.1 glycine cleavage system H protein compare
Psyr_1930 -0.9 -2.0 hypothetical protein compare
Psyr_4262 -0.9 -1.3 lipoprotein, putative compare
Psyr_2285 -0.8 -1.7 Twin-arginine translocation pathway signal compare
Psyr_2824 -0.8 -2.4 conserved hypothetical protein compare
Psyr_2345 -0.8 -2.8 ea59 protein compare
Psyr_4979 -0.8 -4.3 hypothetical protein compare
Psyr_4566 -0.8 -5.2 Peptidase M23B compare
Psyr_3104 -0.8 -2.2 phosphate ABC transporter membrane protein 2, PhoT family compare
Psyr_2664 -0.8 -3.9 hypothetical protein compare
Psyr_4581 -0.8 -1.6 anthranilate synthase, component II compare
Psyr_5135 -0.8 -1.5 Protein of unknown function DUF37 compare
Psyr_4051 -0.8 -2.1 transcriptional regulator, ArsR family compare
Psyr_2925 -0.8 -2.1 Helix-turn-helix motif protein compare
Psyr_4194 -0.8 -2.6 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3202 -0.8 -1.3 NADH dehydrogenase subunit G compare
Psyr_4920 -0.8 -1.2 conserved hypothetical bacteriophage protein compare
Psyr_3199 -0.8 -1.9 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4754 -0.8 -1.7 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4093 -0.8 -2.9 glutamate N-acetyltransferase compare
Psyr_3840 -0.8 -2.6 conserved hypothetical protein compare
Psyr_2262 -0.8 -1.3 Peptidase M20:Peptidase M20 compare
Psyr_4362 -0.8 -1.9 Rare lipoprotein A compare
Psyr_4788 -0.8 -1.8 lipoprotein, putative compare
Psyr_1371 -0.8 -3.7 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0282 -0.8 -2.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1404 -0.8 -4.2 Ferritin and Dps compare
Psyr_2225 -0.8 -2.1 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_4622 -0.8 -3.1 Nucleotidyl transferase compare
Psyr_0579 -0.7 -5.2 RNAse R compare
Psyr_3594 -0.7 -2.3 membrane protein-like protein compare
Psyr_4460 -0.7 -1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_0916 -0.7 -4.4 GDP-mannose 4,6-dehydratase compare
Psyr_4408 -0.7 -4.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2899 -0.7 -2.4 conserved hypothetical protein compare
Psyr_1554 -0.7 -2.2 hypothetical protein compare
Psyr_0863 -0.7 -3.1 PhnA protein compare
Psyr_2840 -0.7 -2.1 hypothetical protein compare
Psyr_0919 -0.7 -4.7 Chromosome segregation ATPase-like protein compare
Psyr_1121 -0.7 -1.6 6-phosphogluconolactonase compare
Psyr_1123 -0.7 -2.7 conserved hypothetical protein compare
Psyr_2347 -0.7 -1.5 hypothetical protein compare
Psyr_1919 -0.7 -2.9 hypothetical protein compare
Psyr_3088 -0.7 -2.8 Glycosyl transferase, group 1 compare
Psyr_3084 -0.7 -1.6 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2639 -0.7 -3.8 hypothetical protein compare
Psyr_3107 -0.7 -1.4 conserved hypothetical protein compare
Psyr_4118 -0.7 -3.2 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_4112 -0.7 -4.4 Protein of unknown function UPF0011 compare
Psyr_3346 -0.7 -2.6 conserved hypothetical protein compare
Psyr_2294 -0.7 -1.9 conserved hypothetical protein compare
Psyr_1935 -0.7 -2.7 Protein of unknown function DUF796 compare
Psyr_0920 -0.7 -5.8 Glycosyl transferase, group 1 compare
Psyr_3644 -0.7 -2.3 prephenate dehydrogenase compare
Psyr_1410 -0.7 -2.0 Holliday junction DNA helicase RuvB compare
Psyr_1555 -0.7 -1.8 Cobyrinic acid a,c-diamide synthase compare
Psyr_3290 -0.7 -2.3 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_2498 -0.7 -3.0 GCN5-related N-acetyltransferase compare
Psyr_0255 -0.7 -1.4 glutamate-cysteine ligase compare
Psyr_2854 -0.7 -2.1 conserved hypothetical protein compare
Psyr_0535 -0.7 -1.9 toluene tolerance protein, putative compare
Psyr_3806 -0.7 -2.9 hypothetical protein compare
Psyr_2617 -0.6 -1.6 Secretion protein HlyD compare
Psyr_1021 -0.6 -3.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_2428 -0.6 -2.2 GCN5-related N-acetyltransferase compare
Psyr_1931 -0.6 -2.5 hypothetical protein compare
Psyr_1749 -0.6 -3.4 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_2117 -0.6 -1.1 conserved hypothetical protein compare
Psyr_3425 -0.6 -1.4 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_4019 -0.6 -2.1 H-NS family protein MvaT compare
Psyr_3867 -0.6 -0.8 hypothetical protein compare
Psyr_0202 -0.6 -3.8 transcriptional regulator, LysR family compare
Psyr_2848 -0.6 -2.0 hypothetical protein compare
Psyr_2771 -0.6 -3.4 conserved domain protein compare
Psyr_3446 -0.6 -1.5 Surface presentation of antigens (SPOA) protein compare
Psyr_5065 -0.6 -3.5 ATP-dependent DNA helicase UvrD compare
Psyr_0294 -0.6 -2.4 Exopolyphosphatase compare
Psyr_4361 -0.6 -1.7 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_2160 -0.6 -1.8 cold-shock DNA-binding protein family compare
Psyr_2669 -0.6 -1.8 Aminoglycoside phosphotransferase compare
Psyr_2065 -0.6 -2.5 transcription elongation factor GreB compare
Psyr_4716 -0.6 -2.1 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_2601 -0.6 -3.3 regulatory protein, LuxR compare
Psyr_1460 -0.6 -2.0 hypothetical protein compare
Psyr_0119 -0.6 -2.3 CDS compare
Psyr_0528 -0.6 -1.4 Carbamoyltransferase compare
Psyr_3636 -0.6 -4.1 Polysaccharide biosynthesis protein CapD compare
Psyr_1722 -0.6 -1.5 Amidohydrolase 2 compare
Psyr_4138 -0.6 -1.6 Toluene tolerance compare
Psyr_3618 -0.6 -1.4 Catalytic LigB subunit of aromatic ring-opening dioxygenase compare
Psyr_5130 -0.6 -3.3 chromosome segregation ATPase compare
Psyr_4609 -0.6 -4.5 anthranilate synthase, component I compare
Psyr_2184 -0.6 -1.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_2769 -0.6 -1.6 conserved hypothetical protein compare
Psyr_2842 -0.6 -2.8 hypothetical protein compare
Psyr_2320 -0.6 -2.7 YD repeat protein compare
Psyr_1212 -0.6 -1.2 type III secretion protein HrpO compare
Psyr_2773 -0.6 -3.2 hypothetical protein compare
Psyr_3616 -0.6 -3.2 Heat shock protein, Metallo peptidase, MEROPS family M48B compare
Psyr_2739 -0.6 -1.9 ThiJ/PfpI compare
Psyr_3164 -0.6 -3.5 Protein of unknown function UPF0005 compare
Psyr_1588 -0.6 -1.8 Putative exonuclease, RdgC compare
Psyr_2590 -0.6 -1.9 Periplasmic binding protein compare
Psyr_4658 -0.6 -0.9 CDS compare
Psyr_3089 -0.6 -4.4 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_3624 -0.6 -2.3 transcriptional regulator, LysR family compare
Psyr_2114 -0.6 -1.6 two component transcriptional regulator, LuxR family compare
Psyr_3116 -0.5 -1.3 transcriptional regulator, CdaR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Gamma-Aminobutyric Acid Hydrochloride across organisms