Experiment set11IT025 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Nitrate reduction, replicate C

200 most important genes:

  gene name fitness t score description  
AO353_19060 -3.0 -7.0 CysB family transcriptional regulator compare
AO353_15170 -2.5 -4.2 cytochrome D ubiquinol oxidase subunit III compare
AO353_05115 -2.3 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20635 -2.2 -7.1 3-isopropylmalate dehydrogenase compare
AO353_22105 -2.0 -3.1 nitrate reductase compare
AO353_05110 -2.0 -7.2 histidinol dehydrogenase compare
AO353_09720 -1.9 -1.3 hypothetical protein compare
AO353_20800 -1.9 -1.2 hypothetical protein compare
AO353_15490 -1.9 -1.9 hypothetical protein compare
AO353_08995 -1.9 -11.1 chemotaxis protein CheY compare
AO353_12365 -1.9 -2.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_08185 -1.9 -8.9 methionine biosynthesis protein MetW compare
AO353_22110 -1.9 -1.8 nitrate reductase compare
AO353_12085 -1.8 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12090 -1.8 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_23790 -1.8 -2.3 metal-binding protein compare
AO353_13165 -1.7 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07230 -1.7 -7.7 anthranilate synthase compare
AO353_05800 -1.7 -1.7 hypothetical protein compare
AO353_20625 -1.7 -3.0 3-isopropylmalate dehydratase compare
AO353_22305 -1.7 -1.6 LysR family transcriptional regulator compare
AO353_22135 -1.7 -2.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_26115 -1.7 -1.6 hypothetical protein compare
AO353_22075 -1.7 -3.3 hypothetical protein compare
AO353_23590 -1.7 -1.6 ArsR family transcriptional regulator compare
AO353_00955 -1.7 -1.7 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_20665 -1.7 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_00125 -1.6 -2.0 hypothetical protein compare
AO353_22125 -1.6 -7.4 anaerobic ribonucleoside-triphosphate reductase conserved
AO353_12520 -1.6 -5.1 glutamate synthase compare
AO353_15925 -1.6 -7.1 2-isopropylmalate synthase compare
AO353_12515 -1.6 -9.0 glutamate synthase compare
AO353_05520 -1.6 -3.5 nicotinate-nucleotide pyrophosphorylase compare
AO353_07220 -1.6 -4.3 anthranilate synthase compare
AO353_05105 -1.5 -6.7 histidinol-phosphate aminotransferase compare
AO353_16195 -1.5 -1.9 DNA mismatch repair protein MutT compare
AO353_20300 -1.5 -7.8 anti-sigma factor compare
AO353_14505 -1.5 -5.8 ketol-acid reductoisomerase compare
AO353_24340 -1.5 -1.0 TetR family transcriptional regulator compare
AO353_07445 -1.5 -1.7 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_04865 -1.4 -4.1 hypothetical protein compare
AO353_21455 -1.4 -1.9 cation:proton antiporter compare
AO353_10320 -1.4 -1.8 hypothetical protein compare
AO353_12240 -1.4 -4.4 histidine utilization repressor compare
AO353_13070 -1.4 -5.4 phosphoserine phosphatase compare
AO353_12665 -1.4 -2.1 glycosyl transferase compare
AO353_02070 -1.4 -3.3 prephenate dehydratase compare
AO353_20095 -1.3 -2.5 histidine kinase compare
AO353_00185 -1.3 -1.9 phage tail protein compare
AO353_08475 -1.3 -4.5 phosphoserine phosphatase compare
AO353_04830 -1.3 -3.3 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_27040 -1.3 -3.6 molybdenum ABC transporter ATP-binding protein compare
AO353_19055 -1.3 -4.2 universal stress protein UspA compare
AO353_12070 -1.3 -4.9 imidazoleglycerol-phosphate dehydratase compare
AO353_18700 -1.3 -2.1 flagellar biogenesis protein compare
AO353_16155 -1.3 -1.9 antibiotic biosynthesis monooxygenase compare
AO353_23985 -1.3 -2.9 isochorismate-pyruvate lyase compare
AO353_26045 -1.3 -1.5 hypothetical protein compare
AO353_05075 -1.3 -4.2 adenylylsulfate kinase compare
AO353_00260 -1.3 -1.5 hypothetical protein compare
AO353_00170 -1.3 -1.9 lysozyme compare
AO353_03020 -1.3 -4.1 arginine N-succinyltransferase compare
AO353_08180 -1.3 -5.5 homoserine O-acetyltransferase compare
AO353_00660 -1.3 -3.0 transcriptional regulator compare
AO353_04220 -1.3 -2.5 chemotaxis protein CheY compare
AO353_26190 -1.3 -3.0 hypothetical protein compare
AO353_10315 -1.3 -7.9 sulfate transporter conserved
AO353_14775 -1.2 -2.9 hypothetical protein compare
AO353_21290 -1.2 -1.5 hypothetical protein compare
AO353_05205 -1.2 -6.9 peptidase PmbA compare
AO353_20565 -1.2 -0.8 tRNA-Ala compare
AO353_12565 -1.2 -1.8 type II secretion system protein GspH compare
AO353_22095 -1.2 -6.0 nitrate reductase conserved
AO353_23950 -1.2 -2.0 hypothetical protein compare
AO353_15295 -1.2 -4.1 division/cell wall cluster transcriptional repressor MraZ compare
AO353_24130 -1.2 -1.9 hypothetical protein compare
AO353_17750 -1.2 -1.9 transcriptional regulator compare
AO353_27335 -1.2 -1.6 hypothetical protein compare
AO353_27030 -1.2 -3.7 molybdate ABC transporter substrate-binding protein compare
AO353_20695 -1.2 -2.5 O-succinylhomoserine sulfhydrylase compare
AO353_17885 -1.2 -1.2 hypothetical protein compare
AO353_00505 -1.2 -3.2 3-ketoacyl-CoA thiolase compare
AO353_07290 -1.2 -4.5 mannose-1-phosphate guanylyltransferase compare
AO353_08345 -1.2 -2.8 dihydroxy-acid dehydratase compare
AO353_28390 -1.2 -2.3 hypothetical protein compare
AO353_27350 -1.2 -1.8 hypothetical protein compare
AO353_04870 -1.2 -3.4 AraC family transcriptional regulator compare
AO353_25255 -1.1 -4.3 large subunit of pyruvate transporter (CstA) (from data) compare
AO353_21995 -1.1 -6.1 nitric oxide reductase conserved
AO353_05080 -1.1 -4.1 sulfate adenylyltransferase compare
AO353_22215 -1.1 -2.0 hypothetical protein compare
AO353_09030 -1.1 -1.1 iron donor protein CyaY compare
AO353_07215 -1.1 -2.9 anthranilate phosphoribosyltransferase compare
AO353_24415 -1.1 -1.6 glutamine ABC transporter ATP-binding protein compare
AO353_05125 -1.1 -1.5 BolA family transcriptional regulator compare
AO353_12075 -1.1 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_22985 -1.1 -1.8 hypothetical protein compare
AO353_13515 -1.1 -2.2 Urease (EC 3.5.1.5) (from data) compare
AO353_06355 -1.1 -1.7 thiamine-phosphate pyrophosphorylase compare
AO353_27380 -1.1 -0.7 pyocin R2, holin compare
AO353_27500 -1.1 -1.5 hypothetical protein compare
AO353_05130 -1.1 -1.4 anti-anti-sigma factor compare
AO353_07210 -1.1 -2.6 indole-3-glycerol-phosphate synthase compare
AO353_22100 -1.1 -4.0 nitrate reductase compare
AO353_22195 -1.1 -1.5 metal ABC transporter permease compare
AO353_08100 -1.0 -1.0 chemotaxis protein CheY compare
AO353_18335 -1.0 -1.7 hypothetical protein compare
AO353_19295 -1.0 -1.1 hypothetical protein compare
AO353_18960 -1.0 -1.6 terminase compare
AO353_20620 -1.0 -2.9 isopropylmalate isomerase compare
AO353_06480 -1.0 -1.5 50S rRNA methyltransferase compare
AO353_05215 -1.0 -4.7 protease TldD compare
AO353_11695 -1.0 -1.7 hypothetical protein compare
AO353_21920 -1.0 -3.3 cytochrome C oxidase Cbb3 compare
AO353_02590 -1.0 -1.9 MarR family transcriptional regulator compare
AO353_18400 -1.0 -3.0 agmatinase compare
AO353_08210 -1.0 -2.8 tRNA (guanine-N7)-methyltransferase compare
AO353_05885 -1.0 -2.5 glyoxalase compare
AO353_09560 -0.9 -0.9 type VI secretion protein compare
AO353_17855 -0.9 -2.0 ribonuclease D compare
AO353_00150 -0.9 -2.0 hypothetical protein compare
AO353_25740 -0.9 -2.2 FMN-dependent NADH-azoreductase compare
AO353_02685 -0.9 -1.6 phosphoribosylglycinamide formyltransferase compare
AO353_23165 -0.9 -1.6 cupin compare
AO353_17620 -0.9 -5.9 L-aspartate oxidase compare
AO353_03525 -0.9 -3.8 quinolinate synthase A compare
AO353_22500 -0.9 -1.2 hypothetical protein compare
AO353_01780 -0.9 -4.1 heat-shock protein Hsp90 compare
AO353_28890 -0.9 -1.8 hypothetical protein compare
AO353_07575 -0.9 -2.9 DNA polymerase III subunit epsilon compare
AO353_26405 -0.9 -2.1 hypothetical protein compare
AO353_21530 -0.9 -1.8 type VI secretion protein compare
AO353_28965 -0.9 -2.0 hypothetical protein compare
AO353_16845 -0.9 -4.0 LysR family transcriptional regulator compare
AO353_26315 -0.9 -2.3 hypothetical protein compare
AO353_29000 -0.9 -1.6 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_13980 -0.9 -2.9 DNA repair protein RadA compare
AO353_05185 -0.9 -4.5 hypothetical protein compare
AO353_11945 -0.9 -0.9 4-oxalocrotonate tautomerase compare
AO353_06490 -0.9 -1.9 nicotinate-nucleotide adenylyltransferase compare
AO353_06495 -0.9 -2.7 gamma-glutamyl phosphate reductase compare
AO353_04230 -0.9 -1.9 chemotaxis protein CheW compare
AO353_19170 -0.9 -3.8 histidine kinase compare
AO353_12560 -0.9 -2.9 type II secretion system protein GspG compare
AO353_20265 -0.9 -1.4 spore coat protein compare
AO353_19605 -0.9 -1.1 hypothetical protein compare
AO353_25245 -0.9 -2.7 regulator compare
AO353_19395 -0.9 -2.3 hypothetical protein compare
AO353_02270 -0.9 -2.5 isochorismatase compare
AO353_02630 -0.9 -1.7 5,6-dimethylbenzimidazole synthase compare
AO353_19735 -0.9 -3.1 hypothetical protein compare
AO353_19630 -0.8 -4.1 glucoamylase compare
AO353_26450 -0.8 -2.0 hypothetical protein compare
AO353_27035 -0.8 -2.4 molybdenum ABC transporter permease compare
AO353_28475 -0.8 -2.1 NmrA family transcriptional regulator compare
AO353_21320 -0.8 -1.4 glutathione S-transferase compare
AO353_06405 -0.8 -1.4 hypothetical protein compare
AO353_12015 -0.8 -1.1 antitoxin compare
AO353_14370 -0.8 -3.4 glucose-6-phosphate isomerase compare
AO353_25900 -0.8 -3.2 mannitol dehydrogenase compare
AO353_22015 -0.8 -2.1 short-chain dehydrogenase compare
AO353_11780 -0.8 -1.5 hypothetical protein compare
AO353_10710 -0.8 -1.0 tryptophan synthase subunit beta compare
AO353_13060 -0.8 -3.4 hypothetical protein compare
AO353_03805 -0.8 -1.6 C4-dicarboxylate ABC transporter compare
AO353_22035 -0.8 -1.6 pyridoxine 5'-phosphate oxidase compare
AO353_21975 -0.8 -2.4 AAA family ATPase compare
AO353_14380 -0.8 -1.7 pantoate--beta-alanine ligase compare
AO353_25925 -0.8 -1.3 hypothetical protein compare
AO353_16740 -0.8 -1.2 phage tail protein compare
AO353_17720 -0.8 -2.3 ABC transporter substrate-binding protein compare
AO353_06250 -0.8 -2.1 GNAT family acetyltransferase compare
AO353_08780 -0.8 -2.0 5-formyltetrahydrofolate cyclo-ligase compare
AO353_25870 -0.8 -1.2 peptide ABC transporter ATP-binding protein compare
AO353_05345 -0.8 -2.8 hypothetical protein compare
AO353_21425 -0.8 -2.3 hypothetical protein compare
AO353_27675 -0.8 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_21540 -0.8 -1.5 type VI secretion protein compare
AO353_20815 -0.8 -1.4 LacI family transcriptional regulator compare
AO353_05325 -0.8 -2.0 GntR family transcriptional regulator compare
AO353_14410 -0.8 -2.5 MFS transporter compare
AO353_24550 -0.8 -1.6 hypothetical protein compare
AO353_04035 -0.8 -1.9 exclusion suppressor FxsA compare
AO353_12030 -0.8 -1.9 hypothetical protein compare
AO353_02975 -0.8 -1.6 aspartate kinase compare
AO353_19685 -0.8 -1.4 alkylhydroperoxidase compare
AO353_19280 -0.8 -1.0 hypothetical protein compare
AO353_00455 -0.8 -0.9 beta-hexosaminidase compare
AO353_17175 -0.8 -1.1 beta-ketoadipyl CoA thiolase compare
AO353_01725 -0.8 -1.1 phosphohistidine phosphatase compare
AO353_02040 -0.8 -0.9 integration host factor subunit beta compare
AO353_26955 -0.8 -2.8 lactoylglutathione lyase compare
AO353_27250 -0.8 -2.6 glycoside hydrolase family 19 compare
AO353_07615 -0.8 -2.1 hypothetical protein compare
AO353_14060 -0.8 -1.6 hypothetical protein compare
AO353_16040 -0.8 -1.2 hypothetical protein compare
AO353_27400 -0.7 -1.1 hypothetical protein compare
AO353_26655 -0.7 -1.7 branched-chain amino acid aminotransferase compare
AO353_27025 -0.7 -1.7 2-nitropropane dioxygenase compare
AO353_22390 -0.7 -2.7 aldehyde dehydrogenase compare


Specific Phenotypes

For 5 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N2E3

For denitrifying Sodium pyruvate across organisms