Experiment set11IT025 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Cyclopamine 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_2767 +1.5 3.7 Glycoside hydrolase, family 19 compare
Psyr_4335 +1.2 2.5 transcriptional regulator, AsnC family compare
Psyr_4183 +1.0 3.7 protein translocase subunit secG compare
Psyr_2879 +1.0 2.3 VirK compare
Psyr_2538 +0.9 1.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1881 +0.9 3.6 conserved hypothetical protein compare
Psyr_2887 +0.8 2.4 Endoribonuclease L-PSP compare
Psyr_2386 +0.8 2.1 hypothetical protein compare
Psyr_3673 +0.8 1.3 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_3555 +0.8 2.0 aspartate kinase compare
Psyr_3692 +0.8 1.4 conserved hypothetical protein compare
Psyr_3394 +0.7 3.2 conserved hypothetical protein compare
Psyr_0037 +0.7 1.7 Protein of unknown function DUF1458 compare
Psyr_2752 +0.7 1.2 conserved hypothetical protein compare
Psyr_2733 +0.7 1.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_0531 +0.7 2.0 LmbE-like protein compare
Psyr_3146 +0.7 1.4 general secretion pathway protein J, putative compare
Psyr_2223 +0.7 1.1 sarcosine oxidase, delta subunit compare
Psyr_3545 +0.7 2.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_2873 +0.7 2.6 Acyl-CoA dehydrogenase, C-terminal compare
Psyr_4831 +0.7 2.6 ABC transporter compare
Psyr_1895 +0.7 2.1 conserved hypothetical protein compare
Psyr_2890 +0.7 2.4 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_3459 +0.7 1.8 Helix-turn-helix, Fis-type compare
Psyr_2107 +0.6 2.5 Ribosome modulation factor compare
Psyr_1202 +0.6 1.7 negative regulator of hrp expression HrpV compare
Psyr_2594 +0.6 0.9 unknown conserved protein in bacilli compare
Psyr_3095 +0.6 2.1 transport system permease protein compare
Psyr_1893 +0.6 3.1 Isochorismatase hydrolase compare
Psyr_2124 +0.6 3.4 Benzoate transport compare
Psyr_1780 +0.6 1.4 transcriptional regulator, TetR family compare
Psyr_2266 +0.6 1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3896 +0.6 1.8 BFD-like [2Fe-2S]-binding region compare
Psyr_0623 +0.6 1.5 Peptidase S24, S26A and S26B compare
Psyr_4586 +0.6 2.2 tail protein, putative compare
Psyr_3023 +0.6 1.9 conserved hypothetical protein compare
Psyr_2743 +0.6 2.0 Lysine exporter protein (LYSE/YGGA) compare
Psyr_2829 +0.6 1.9 conserved hypothetical protein compare
Psyr_1377 +0.6 2.1 CinA, C-terminal compare
Psyr_0153 +0.6 1.9 conserved hypothetical protein compare
Psyr_4068 +0.6 2.2 conserved hypothetical protein compare
Psyr_3262 +0.6 1.5 dnaK suppressor protein, putative compare
Psyr_1839 +0.6 2.6 Benzoate membrane transport protein compare
Psyr_2507 +0.6 2.0 Endoribonuclease L-PSP compare
Psyr_0674 +0.6 1.9 Protein of unknown function UPF0029 compare
Psyr_2508 +0.6 1.6 transcriptional regulator, IclR family compare
Psyr_1111 +0.6 1.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1247 +0.6 1.4 conserved hypothetical protein compare
Psyr_2057 +0.6 2.1 acyl-CoA thioesterase II, putative compare
Psyr_4001 +0.6 1.4 conserved domain protein compare
Psyr_3783 +0.6 2.3 conserved hypothetical protein compare
Psyr_3698 +0.6 2.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_2340 +0.6 2.1 Peptidylprolyl isomerase, FKBP-type compare
Psyr_4789 +0.6 1.8 lipoprotein, putative compare
Psyr_3518 +0.5 2.7 hypothetical protein compare
Psyr_0436 +0.5 1.4 Phosphopantetheine-binding protein compare
Psyr_1719 +0.5 1.8 conserved hypothetical protein compare
Psyr_4153 +0.5 2.1 conserved hypothetical protein compare
Psyr_0441 +0.5 1.4 conserved hypothetical protein compare
Psyr_2364 +0.5 1.8 conserved hypothetical protein compare
Psyr_2342 +0.5 1.9 CBS:Transporter-associated region:Integral membrane protein TerC compare
Psyr_0791 +0.5 0.8 MOSC compare
Psyr_1424 +0.5 1.6 Peptidase S24, S26A and S26B compare
Psyr_4127 +0.5 2.3 S23 ribosomal compare
Psyr_1104 +0.5 1.7 Heme oxygenase compare
Psyr_1937 +0.5 1.6 UspA compare
Psyr_2461 +0.5 1.4 Uncharacterized conserved protein UCP030820 compare
Psyr_2903 +0.5 2.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0746 +0.5 2.3 IS66 Orf2 like protein compare
Psyr_3473 +0.5 1.5 Flagellar P-ring protein compare
Psyr_2402 +0.5 2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_2487 +0.5 1.8 Short-chain dehydrogenase/reductase SDR compare
Psyr_2827 +0.5 2.3 phage-related protein compare
Psyr_3233 +0.5 2.0 FMN reductase compare
Psyr_3103 +0.5 2.0 phosphate ABC transporter ATP-binding protein, PhoT family compare
Psyr_3315 +0.5 1.4 conserved hypothetical protein compare
Psyr_2274 +0.5 2.8 glutamate synthase (NADPH) GltB1 subunit compare
Psyr_2741 +0.5 1.9 Beta-lactamase compare
Psyr_2098 +0.5 2.2 uroporphyrinogen-III C-methyltransferase compare
Psyr_1829 +0.5 1.8 conserved hypothetical protein compare
Psyr_1381 +0.5 2.1 conserved hypothetical protein compare
Psyr_2938 +0.5 2.1 transcriptional regulator, LysR family compare
Psyr_4842 +0.5 2.9 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_2318 +0.5 1.3 CDS compare
Psyr_3684 +0.5 1.4 NLP/P60 compare
Psyr_0873 +0.5 2.0 GCN5-related N-acetyltransferase compare
Psyr_2984 +0.5 1.5 conserved hypothetical protein compare
Psyr_2586 +0.5 2.2 Drug resistance transporter EmrB/QacA subfamily compare
Psyr_2955 +0.5 1.8 Surfeit locus 4-related protein compare
Psyr_3512 +0.5 1.4 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2557 +0.5 1.2 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_3676 +0.5 1.6 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3288 +0.5 1.8 conserved hypothetical protein compare
Psyr_1251 +0.5 1.9 quinoprotein compare
Psyr_3601 +0.5 0.8 conserved hypothetical protein compare
Psyr_2409 +0.5 1.3 Protein of unknown function DUF1185 compare
Psyr_2866 +0.5 2.2 Secretion protein HlyD compare
Psyr_4168 +0.5 2.2 K+-dependent Na+/Ca+ exchanger related-protein compare
Psyr_4582 +0.5 0.7 hypothetical protein compare
Psyr_2027 +0.5 2.7 epoxide hydrolase, Serine peptidase, MEROPS family S33 compare
Psyr_1480 +0.5 1.9 conserved hypothetical protein compare
Psyr_3053 +0.5 1.3 conserved hypothetical protein compare
Psyr_3701 +0.5 1.2 thioredoxin, putative compare
Psyr_3000 +0.5 0.9 methyltransferase, putative compare
Psyr_1226 +0.5 1.9 hypothetical protein compare
Psyr_1087 +0.5 1.8 CDS compare
Psyr_2781 +0.5 1.3 hypothetical protein compare
Psyr_3591 +0.4 2.0 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3241 +0.4 1.9 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_3825 +0.4 2.4 transcriptional regulator, LysR family compare
Psyr_0449 +0.4 2.1 Malonate transporter MadL subunit compare
Psyr_2759 +0.4 2.1 Eukaryotic-like DNA topoisomerase I compare
Psyr_4466 +0.4 1.3 Thioredoxin compare
Psyr_0356 +0.4 0.6 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_0954 +0.4 1.5 Protein of unknown function UPF0153 compare
Psyr_4404 +0.4 1.5 tRNA-U20-dihydrouridine synthase compare
Psyr_2069 +0.4 1.2 conserved hypothetical protein compare
Psyr_1949 +0.4 1.6 ABC-3 compare
Psyr_4487 +0.4 1.2 Carbohydrate kinase, PfkB compare
Psyr_0635 +0.4 1.4 MaoC-like dehydratase compare
Psyr_3662 +0.4 1.8 NAD(P)H dehydrogenase (quinone) compare
Psyr_2150 +0.4 1.2 protein of unknown function DUF903 compare
Psyr_5036 +0.4 1.0 Response regulator receiver compare
Psyr_1871 +0.4 2.3 Transglutaminase-like protein compare
Psyr_2605 +0.4 1.7 transposase, putative compare
Psyr_3462 +0.4 0.7 conserved hypothetical protein compare
Psyr_0032 +0.4 2.1 conserved hypothetical protein compare
Psyr_1624 +0.4 1.3 transcriptional regulator, MarR family compare
Psyr_2396 +0.4 1.2 Tartrate dehydrogenase compare
Psyr_2732 +0.4 2.3 conserved hypothetical protein; putative signal peptide compare
Psyr_3272 +0.4 2.4 5-deoxyglucuronate isomerase compare
Psyr_0132 +0.4 1.5 conserved hypothetical protein compare
Psyr_3578 +0.4 2.4 Major facilitator superfamily compare
Psyr_3484 +0.4 2.0 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_1335 +0.4 2.1 Aminotransferase, class V compare
Psyr_0736 +0.4 1.7 umuC protein compare
Psyr_3837 +0.4 1.4 conserved hypothetical protein compare
Psyr_4044 +0.4 1.6 Phospholipase D/Transphosphatidylase compare
Psyr_4139 +0.4 1.9 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_0264 +0.4 2.0 Alginate biosynthesis sensor protein KinB compare
Psyr_4175 +0.4 2.2 Transport-associated protein compare
Psyr_1963 +0.4 2.1 Cyclic peptide transporter compare
Psyr_4169 +0.4 0.9 4-carboxymuconolactone decarboxylase compare
Psyr_3932 +0.4 1.3 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4086 +0.4 2.6 MscS Mechanosensitive ion channel compare
Psyr_2524 +0.4 2.1 conserved hypothetical protein compare
Psyr_1040 +0.4 2.1 RNA polymerase sigma factor, ECF subfamily compare
Psyr_1274 +0.4 1.2 transferase hexapeptide repeat protein compare
Psyr_0400 +0.4 1.8 nuclease (SNase-like) compare
Psyr_2279 +0.4 2.0 conserved hypothetical protein compare
Psyr_0447 +0.4 1.0 malonate decarboxylase subunit, putative compare
Psyr_1807 +0.4 1.4 Allantoicase compare
Psyr_2681 +0.4 2.2 gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03 compare
Psyr_4920 +0.4 0.6 conserved hypothetical bacteriophage protein compare
Psyr_0261 +0.4 2.0 conserved hypothetical protein compare
Psyr_2894 +0.4 0.8 conserved hypothetical protein compare
Psyr_0735 +0.4 1.3 Peptidase S24, S26A and S26B compare
Psyr_0784 +0.4 1.1 CheW-like protein compare
Psyr_3483 +0.4 2.4 Cyanase compare
Psyr_0541 +0.4 1.5 Small multidrug resistance protein compare
Psyr_2926 +0.4 2.4 General substrate transporter:Major facilitator superfamily compare
Psyr_1887 +0.4 1.1 CDS compare
Psyr_2088 +0.4 0.9 2-methylaconitate cis-trans isomerase compare
Psyr_3405 +0.4 2.1 Abortive infection protein compare
Psyr_2998 +0.4 1.6 conserved hypothetical protein compare
Psyr_2922 +0.4 2.3 Permease for cytosine/purines, uracil, thiamine, allantoin compare
Psyr_3480 +0.4 1.5 Flagellar basal-body rod protein FlgC compare
Psyr_1273 +0.4 2.1 NUDIX hydrolase compare
Psyr_2737 +0.4 1.2 hypothetical protein compare
Psyr_3381 +0.4 1.5 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1786 +0.4 1.2 membrane protein, putative compare
Psyr_0576 +0.4 1.3 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1892 +0.4 1.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_2685 +0.4 2.7 ornithine carbamoyltransferase compare
Psyr_2374 +0.4 2.4 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_1616 +0.4 0.9 Rieske [2Fe-2S] region compare
Psyr_1997 +0.4 1.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_4861 +0.4 2.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1984 +0.4 1.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_0385 +0.4 0.8 phosphoribosyl-ATP pyrophosphatase compare
Psyr_2051 +0.4 1.5 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0845 +0.4 1.2 conserved hypothetical protein compare
Psyr_4802 +0.4 1.1 Secretion protein HlyD compare
Psyr_2560 +0.4 1.5 hypothetical protein compare
Psyr_3482 +0.4 2.1 Protein of unknown function DUF1348 compare
Psyr_2417 +0.4 1.7 conserved hypothetical protein compare
Psyr_3249 +0.4 2.3 conserved hypothetical protein compare
Psyr_2915 +0.4 1.7 transcriptional regulator, AraC family with amidase-like domain protein compare
Psyr_4455 +0.4 0.8 conserved hypothetical protein compare
Psyr_4620 +0.4 1.8 conserved hypothetical protein compare
Psyr_2452 +0.4 2.0 Enoyl-CoA hydratase/isomerase compare
Psyr_2562 +0.4 0.7 hypothetical protein compare
Psyr_2177 +0.4 1.5 probable sulfopyruvate decarboxylase compare
Psyr_2360 +0.4 0.8 CBS compare
Psyr_4262 +0.4 0.8 lipoprotein, putative compare
Psyr_3211 +0.4 1.9 ATP-binding region, ATPase-like:Histidine kinase, HAMP region compare
Psyr_4418 +0.4 1.1 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_2327 +0.4 1.1 GTP cyclohydrolase subunit MoaA compare
Psyr_3229 +0.4 2.1 Glycosyl transferase, group 1 compare
Psyr_2529 +0.4 1.7 Amidohydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Cyclopamine across organisms