Experiment set11IT024 for Pseudomonas fluorescens FW300-N2E2

Compare to:

RCH2_defined

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -5.7 -7.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3248 -5.7 -5.5 Probable transmembrane protein compare
Pf6N2E2_3783 -5.2 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4048 -5.2 -7.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4826 -5.2 -7.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_64 -5.0 -3.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_77 -4.9 -3.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3752 -4.7 -19.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3630 -4.6 -5.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3382 -4.6 -8.7 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF compare
Pf6N2E2_4279 -4.5 -15.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3383 -4.5 -8.1 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF compare
Pf6N2E2_2129 -4.5 -4.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3751 -4.5 -14.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_71 -4.5 -5.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4047 -4.4 -3.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3932 -4.4 -7.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5177 -4.4 -12.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4597 -4.3 -7.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4564 -4.3 -9.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4596 -4.3 -7.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3381 -4.2 -9.7 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE compare
Pf6N2E2_2681 -4.2 -2.8 3-phosphoglycerate kinase compare
Pf6N2E2_3842 -4.0 -5.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3841 -4.0 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3839 -4.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4278 -4.0 -13.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3253 -3.9 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4277 -3.9 -11.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4825 -3.9 -8.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3611 -3.8 -3.5 HflC protein compare
Pf6N2E2_2073 -3.7 -7.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3610 -3.7 -6.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_50 -3.7 -9.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2588 -3.7 -4.3 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_66 -3.6 -10.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_63 -3.6 -6.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_1083 -3.6 -2.3 hypothetical protein compare
Pf6N2E2_3380 -3.5 -11.5 L-lactate permease compare
Pf6N2E2_3252 -3.5 -7.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5723 -3.4 -5.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5175 -3.4 -8.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3826 -3.3 -6.9 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5176 -3.2 -4.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4272 -3.2 -2.2 putative membrane protein compare
Pf6N2E2_2074 -3.1 -1.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_302 -3.1 -5.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3251 -3.1 -11.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5728 -3.0 -5.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4072 -2.9 -7.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2519 -2.8 -1.1 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_3940 -2.8 -9.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4416 -2.8 -1.9 Tyrosine recombinase XerC compare
Pf6N2E2_3825 -2.8 -6.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2586 -2.8 -2.6 Hpt domain protein compare
Pf6N2E2_3568 -2.7 -2.9 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_2465 -2.7 -5.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1776 -2.6 -3.4 Chemotaxis protein CheD compare
Pf6N2E2_5103 -2.5 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3666 -2.5 -3.3 InaA protein compare
Pf6N2E2_4206 -2.5 -2.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3461 -2.5 -1.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2899 -2.5 -3.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_3627 -2.5 -8.8 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Pf6N2E2_1656 -2.4 -2.1 hypothetical protein compare
Pf6N2E2_1896 -2.4 -1.5 hypothetical protein compare
Pf6N2E2_5316 -2.4 -2.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3170 -2.4 -6.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3261 -2.3 -10.4 hypothetical protein compare
Pf6N2E2_3908 -2.3 -5.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3384 -2.3 -4.7 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_1239 -2.3 -7.8 Putative TEGT family carrier/transport protein compare
Pf6N2E2_3820 -2.3 -2.3 hypothetical protein compare
Pf6N2E2_2510 -2.2 -1.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2121 -2.2 -2.1 hypothetical protein compare
Pf6N2E2_2646 -2.2 -1.4 FIG00953416: hypothetical protein compare
Pf6N2E2_1673 -2.2 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_4987 -2.2 -0.8 MaoC-like domain protein compare
Pf6N2E2_5153 -2.1 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_760 -2.1 -11.8 Na+/H+ antiporter NhaB compare
Pf6N2E2_4797 -2.1 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5667 -2.1 -9.4 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5990 -2.0 -2.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_5704 -2.0 -2.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5666 -2.0 -10.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2277 -2.0 -2.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_342 -2.0 -1.2 DNA-binding response regulator compare
Pf6N2E2_2323 -2.0 -1.3 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3534 -2.0 -2.4 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3933 -1.9 -7.3 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_5676 -1.9 -3.4 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5328 -1.9 -5.6 FIG00958649: hypothetical protein compare
Pf6N2E2_4057 -1.9 -0.7 lipoprotein, putative compare
Pf6N2E2_4414 -1.9 -1.2 FIG00953808: hypothetical protein compare
Pf6N2E2_5258 -1.8 -6.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2022 -1.8 -2.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5950 -1.8 -3.1 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2274 -1.8 -3.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_288 -1.8 -1.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3351 -1.8 -3.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4579 -1.8 -1.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2281 -1.8 -2.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3206 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_3849 -1.8 -2.3 FIG00954739: hypothetical protein compare
Pf6N2E2_2261 -1.7 -5.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_5794 -1.7 -1.5 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_659 -1.7 -1.7 Transcriptional regulatory protein ompR compare
Pf6N2E2_3938 -1.7 -10.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_5150 -1.7 -5.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1034 -1.7 -1.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5574 -1.7 -6.0 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_1534 -1.7 -1.0 Probable transmembrane protein compare
Pf6N2E2_2152 -1.7 -0.8 hypothetical protein compare
Pf6N2E2_2518 -1.7 -4.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_638 -1.7 -2.7 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_4372 -1.6 -1.6 FIG00460773: hypothetical protein compare
Pf6N2E2_5188 -1.6 -2.8 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5527 -1.6 -1.4 Cold shock protein CspC compare
Pf6N2E2_3134 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_3271 -1.6 -2.2 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3899 -1.6 -7.2 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2714 -1.6 -2.4 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_987 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_5006 -1.6 -4.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5236 -1.5 -3.1 hypothetical protein compare
Pf6N2E2_1247 -1.5 -4.4 hypothetical protein compare
Pf6N2E2_5571 -1.5 -1.6 hypothetical protein compare
Pf6N2E2_3255 -1.5 -3.0 YrbA protein compare
Pf6N2E2_895 -1.5 -4.4 Transcriptional regulator, HxlR family compare
Pf6N2E2_1288 -1.5 -2.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_2088 -1.5 -2.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5605 -1.5 -1.8 FxsA protein compare
Pf6N2E2_1705 -1.5 -2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_248 -1.5 -4.6 hypothetical protein compare
Pf6N2E2_2381 -1.5 -3.2 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2753 -1.5 -1.7 HtrA protease/chaperone protein compare
Pf6N2E2_2938 -1.5 -4.2 Outer membrane lipoprotein compare
Pf6N2E2_5640 -1.5 -1.6 FIG00955597: hypothetical protein compare
Pf6N2E2_4394 -1.5 -4.3 Putrescine utilization regulator compare
Pf6N2E2_2885 -1.5 -5.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1056 -1.5 -0.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3300 -1.5 -2.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_601 -1.4 -3.0 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_2810 -1.4 -3.8 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_2513 -1.4 -2.1 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5579 -1.4 -5.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4928 -1.4 -1.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_2823 -1.4 -4.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3279 -1.4 -2.7 FIG138315: Putative alpha helix protein compare
Pf6N2E2_1435 -1.4 -2.4 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_3480 -1.4 -0.7 Transcriptional regulator, ArsR family compare
Pf6N2E2_4584 -1.4 -1.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5575 -1.4 -2.4 Glycerol uptake facilitator protein compare
Pf6N2E2_4762 -1.4 -2.1 Biotin synthesis protein BioH compare
Pf6N2E2_5257 -1.4 -7.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2072 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_2503 -1.4 -1.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4074 -1.4 -11.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2746 -1.4 -4.1 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_2418 -1.4 -2.0 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4599 -1.4 -2.2 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_4763 -1.4 -6.3 Biotin synthesis protein BioC compare
Pf6N2E2_4476 -1.4 -3.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_4007 -1.4 -4.0 FIG00956018: hypothetical protein compare
Pf6N2E2_4988 -1.3 -2.7 Antiholin-like protein LrgA compare
Pf6N2E2_4477 -1.3 -2.9 Z-ring-associated protein ZapA compare
Pf6N2E2_70 -1.3 -3.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4764 -1.3 -4.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_522 -1.3 -2.5 Inositol transport system sugar-binding protein compare
Pf6N2E2_1545 -1.3 -2.8 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3840 -1.3 -2.7 FIG00956267: hypothetical protein compare
Pf6N2E2_1287 -1.3 -2.3 Mobile element protein compare
Pf6N2E2_5733 -1.3 -3.9 NLP/P60 family protein compare
Pf6N2E2_3696 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_4615 -1.3 -1.5 type IV pili signal transduction protein PilI compare
Pf6N2E2_3986 -1.3 -3.6 PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN compare
Pf6N2E2_1434 -1.3 -1.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2357 -1.3 -3.5 Invasion protein iagA compare
Pf6N2E2_2059 -1.3 -1.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_5780 -1.3 -5.5 Periplasmic protease compare
Pf6N2E2_37 -1.3 -2.1 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_5955 -1.2 -2.6 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_3095 -1.2 -0.4 hypothetical protein compare
Pf6N2E2_4454 -1.2 -5.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3428 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_5178 -1.2 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2825 -1.2 -4.4 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5156 -1.2 -1.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1391 -1.2 -1.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3258 -1.2 -2.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_882 -1.2 -2.8 FIG00961517: hypothetical protein compare
Pf6N2E2_1599 -1.2 -3.6 Cytochrome c-type protein NapC compare
Pf6N2E2_4517 -1.2 -3.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_2752 -1.2 -4.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3612 -1.2 -1.7 HflK protein compare
Pf6N2E2_237 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_4399 -1.2 -3.2 GGDEF domain/EAL domain protein compare
Pf6N2E2_3264 -1.2 -6.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4187 -1.2 -6.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1935 -1.2 -2.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare


Specific Phenotypes

For 2 genes in this experiment