Experiment set11IT024 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Nitrate reduction, replicate B

200 most important genes:

  gene name fitness t score description  
AO353_27435 -2.7 -1.8 hypothetical protein compare
AO353_22075 -2.6 -3.1 hypothetical protein compare
AO353_12090 -2.4 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_16195 -2.4 -2.3 DNA mismatch repair protein MutT compare
AO353_00660 -2.3 -3.4 transcriptional regulator compare
AO353_03815 -2.1 -1.4 heme utilization protein compare
AO353_24130 -2.1 -2.4 hypothetical protein compare
AO353_04055 -2.1 -2.0 methionine--tRNA ligase compare
AO353_27380 -2.1 -2.0 pyocin R2, holin compare
AO353_13165 -2.0 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_15170 -1.9 -3.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_09030 -1.9 -1.8 iron donor protein CyaY compare
AO353_05115 -1.8 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12650 -1.8 -1.3 hypothetical protein compare
AO353_11920 -1.8 -1.7 hypothetical protein compare
AO353_21445 -1.7 -2.3 cation:proton antiporter compare
AO353_23155 -1.6 -2.4 IclR family transcriptional regulator compare
AO353_12085 -1.6 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20625 -1.6 -2.4 3-isopropylmalate dehydratase compare
AO353_12070 -1.6 -4.4 imidazoleglycerol-phosphate dehydratase compare
AO353_13070 -1.5 -5.7 phosphoserine phosphatase compare
AO353_21655 -1.5 -2.1 cobalamin biosynthesis protein CobW compare
AO353_24830 -1.5 -2.5 enoyl-CoA hydratase compare
AO353_12520 -1.5 -4.6 glutamate synthase compare
AO353_05130 -1.5 -1.7 anti-anti-sigma factor compare
AO353_19060 -1.5 -5.3 CysB family transcriptional regulator compare
AO353_20585 -1.5 -1.7 TetR family transcriptional regulator compare
AO353_25260 -1.5 -2.4 hypothetical protein compare
AO353_05110 -1.5 -6.0 histidinol dehydrogenase compare
AO353_20635 -1.5 -6.1 3-isopropylmalate dehydrogenase compare
AO353_08185 -1.5 -7.1 methionine biosynthesis protein MetW compare
AO353_08995 -1.4 -9.2 chemotaxis protein CheY compare
AO353_23590 -1.4 -1.3 ArsR family transcriptional regulator compare
AO353_14485 -1.4 -0.9 pseudouridine synthase compare
AO353_01685 -1.4 -1.6 hypothetical protein compare
AO353_07210 -1.4 -2.5 indole-3-glycerol-phosphate synthase compare
AO353_26100 -1.4 -1.6 lysozyme compare
AO353_06490 -1.4 -2.4 nicotinate-nucleotide adenylyltransferase compare
AO353_22645 -1.4 -1.3 hypothetical protein compare
AO353_06250 -1.4 -2.7 GNAT family acetyltransferase compare
AO353_18500 -1.4 -1.8 chemotaxis protein CheY compare
AO353_22105 -1.3 -2.7 nitrate reductase compare
AO353_13925 -1.3 -1.3 XRE family transcriptional regulator compare
AO353_09885 -1.3 -2.2 transcriptional regulator PhoU compare
AO353_03605 -1.3 -1.0 FmdB family transcriptional regulator compare
AO353_02070 -1.3 -3.0 prephenate dehydratase compare
AO353_20790 -1.3 -2.0 penicillin-binding protein activator LpoB compare
AO353_15605 -1.3 -3.2 histidine kinase compare
AO353_18745 -1.3 -1.7 flagellar biosynthesis protein flip compare
AO353_24340 -1.3 -0.9 TetR family transcriptional regulator compare
AO353_22100 -1.3 -4.0 nitrate reductase compare
AO353_27030 -1.3 -3.3 molybdate ABC transporter substrate-binding protein compare
AO353_19395 -1.3 -2.7 hypothetical protein compare
AO353_00195 -1.3 -1.7 virion morphogenesis protein compare
AO353_24760 -1.3 -2.2 glutamine amidotransferase compare
AO353_28315 -1.3 -1.9 3-demethylubiquinone-9 3-methyltransferase compare
AO353_20620 -1.3 -2.7 isopropylmalate isomerase compare
AO353_17085 -1.2 -1.5 hypothetical protein compare
AO353_12515 -1.2 -7.3 glutamate synthase compare
AO353_04865 -1.2 -3.8 hypothetical protein compare
AO353_25415 -1.2 -2.7 LysR family transcriptional regulator compare
AO353_10320 -1.2 -1.2 hypothetical protein compare
AO353_20665 -1.2 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20300 -1.2 -6.1 anti-sigma factor compare
AO353_18715 -1.2 -0.8 histidine kinase compare
AO353_28110 -1.2 -2.6 TetR family transcriptional regulator compare
AO353_07230 -1.2 -5.9 anthranilate synthase compare
AO353_22095 -1.2 -5.5 nitrate reductase conserved
AO353_07910 -1.2 -1.9 hypothetical protein compare
AO353_03205 -1.2 -2.5 dehydrogenase compare
AO353_05105 -1.2 -5.3 histidinol-phosphate aminotransferase compare
AO353_27040 -1.2 -3.2 molybdenum ABC transporter ATP-binding protein compare
AO353_05240 -1.2 -1.4 rod shape-determining protein MreD compare
AO353_07105 -1.2 -1.2 biotin--protein ligase compare
AO353_25640 -1.2 -0.8 AsnC family transcriptional regulator compare
AO353_15295 -1.1 -3.4 division/cell wall cluster transcriptional repressor MraZ compare
AO353_10290 -1.1 -2.6 LysR family transcriptional regulator compare
AO353_14775 -1.1 -2.2 hypothetical protein compare
AO353_27500 -1.1 -1.4 hypothetical protein compare
AO353_15565 -1.1 -2.6 hypothetical protein compare
AO353_17750 -1.1 -1.7 transcriptional regulator compare
AO353_10315 -1.1 -6.6 sulfate transporter conserved
AO353_20095 -1.1 -1.9 histidine kinase compare
AO353_26520 -1.1 -1.0 TetR family transcriptional regulator compare
AO353_15925 -1.1 -5.3 2-isopropylmalate synthase compare
AO353_22110 -1.1 -1.5 nitrate reductase compare
AO353_08345 -1.1 -2.0 dihydroxy-acid dehydratase compare
AO353_03020 -1.1 -3.4 arginine N-succinyltransferase compare
AO353_28680 -1.1 -1.9 transposase compare
AO353_24790 -1.1 -2.4 Cro/Cl family transcriptional regulator compare
AO353_07145 -1.1 -2.6 anhydro-N-acetylmuramic acid kinase compare
AO353_22270 -1.1 -1.7 antibiotic biosynthesis monooxygenase compare
AO353_20565 -1.1 -0.7 tRNA-Ala compare
AO353_08875 -1.1 -1.4 amino acid ABC transporter ATP-binding protein compare
AO353_26090 -1.1 -1.2 hypothetical protein compare
AO353_26115 -1.0 -1.2 hypothetical protein compare
AO353_09045 -1.0 -1.1 hypothetical protein compare
AO353_14795 -1.0 -1.2 molybdopterin-synthase adenylyltransferase compare
AO353_21940 -1.0 -1.8 protein nirG compare
AO353_19020 -1.0 -2.3 hypothetical protein compare
AO353_19250 -1.0 -1.0 molybdenum cofactor guanylyltransferase compare
AO353_19500 -1.0 -1.9 peptidase S8 and S53 subtilisin kexin sedolisin compare
AO353_21320 -1.0 -1.6 glutathione S-transferase compare
AO353_06105 -1.0 -3.1 short-chain dehydrogenase compare
AO353_17175 -1.0 -1.4 beta-ketoadipyl CoA thiolase compare
AO353_05280 -1.0 -1.4 4-carboxymuconolactone decarboxylase compare
AO353_20205 -1.0 -2.4 hypothetical protein compare
AO353_12580 -1.0 -1.0 type II secretory protein PulK compare
AO353_14380 -1.0 -1.5 pantoate--beta-alanine ligase compare
AO353_11780 -1.0 -1.8 hypothetical protein compare
AO353_19640 -1.0 -2.8 chemotaxis protein CheY compare
AO353_27950 -1.0 -0.9 hypothetical protein compare
AO353_26055 -1.0 -1.2 hypothetical protein compare
AO353_18335 -1.0 -1.5 hypothetical protein compare
AO353_18185 -1.0 -2.8 hypothetical protein compare
AO353_24090 -1.0 -3.3 DNA-binding protein compare
AO353_12075 -1.0 -2.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_22125 -1.0 -5.4 anaerobic ribonucleoside-triphosphate reductase conserved
AO353_18505 -1.0 -1.1 translation initiation factor 2 compare
AO353_09690 -1.0 -2.0 hypothetical protein compare
AO353_24120 -1.0 -1.3 hypothetical protein compare
AO353_24990 -1.0 -1.6 translation elongation factor compare
AO353_09560 -1.0 -1.1 type VI secretion protein compare
AO353_12365 -1.0 -1.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_19055 -1.0 -3.2 universal stress protein UspA compare
AO353_22695 -1.0 -2.0 LysR family transcriptional regulator compare
AO353_22120 -1.0 -2.1 cyclic pyranopterin phosphate synthase MoaA compare
AO353_16375 -1.0 -1.3 hypothetical protein compare
AO353_27690 -1.0 -3.9 isocitrate dehydrogenase compare
AO353_26415 -1.0 -2.0 hypothetical protein compare
AO353_25335 -1.0 -1.1 malonate decarboxylase acyl carrier protein compare
AO353_03945 -0.9 -2.1 hypothetical protein compare
AO353_26285 -0.9 -1.0 hypothetical protein compare
AO353_05010 -0.9 -1.1 HopJ type III effector protein compare
AO353_05800 -0.9 -1.7 hypothetical protein compare
AO353_03525 -0.9 -3.5 quinolinate synthase A compare
AO353_11945 -0.9 -1.1 4-oxalocrotonate tautomerase compare
AO353_21285 -0.9 -2.4 amidase compare
AO353_16980 -0.9 -1.2 isochorismatase compare
AO353_22350 -0.9 -2.1 LuxR family transcriptional regulator compare
AO353_05205 -0.9 -5.0 peptidase PmbA compare
AO353_00505 -0.9 -2.6 3-ketoacyl-CoA thiolase compare
AO353_18005 -0.9 -2.4 allophanate hydrolase compare
AO353_17005 -0.9 -1.5 hypothetical protein compare
AO353_14505 -0.9 -3.9 ketol-acid reductoisomerase compare
AO353_08440 -0.9 -1.8 hypothetical protein compare
AO353_08620 -0.9 -1.3 hypothetical protein compare
AO353_17165 -0.9 -1.2 ATP-dependent helicase compare
AO353_16845 -0.9 -3.7 LysR family transcriptional regulator compare
AO353_16655 -0.9 -1.7 phage baseplate protein compare
AO353_05075 -0.9 -3.0 adenylylsulfate kinase compare
AO353_24635 -0.9 -2.3 hypothetical protein compare
AO353_25870 -0.9 -1.9 peptide ABC transporter ATP-binding protein compare
AO353_26190 -0.9 -2.2 hypothetical protein compare
AO353_04870 -0.9 -2.7 AraC family transcriptional regulator compare
AO353_28285 -0.9 -2.1 hypothetical protein compare
AO353_19520 -0.9 -1.9 quinohemoprotein amine dehydrogenase subunit alpha compare
AO353_12755 -0.9 -3.2 hypothetical protein compare
AO353_08475 -0.9 -3.1 phosphoserine phosphatase compare
AO353_17855 -0.9 -1.8 ribonuclease D compare
AO353_27035 -0.9 -2.0 molybdenum ABC transporter permease compare
AO353_28070 -0.8 -2.0 LysR family transcriptional regulator compare
AO353_17540 -0.8 -1.4 helicase compare
AO353_11610 -0.8 -1.6 glutamine ABC transporter ATP-binding protein compare
AO353_21770 -0.8 -1.3 3-hydroxybutyrate dehydrogenase compare
AO353_04420 -0.8 -1.7 Fe-S protein compare
AO353_05215 -0.8 -3.7 protease TldD compare
AO353_27180 -0.8 -1.5 peptidase M48, Ste24p compare
AO353_22135 -0.8 -1.3 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_18495 -0.8 -2.6 LTXXQ domain protein compare
AO353_25945 -0.8 -1.7 hypothetical protein compare
AO353_25420 -0.8 -2.6 spermidine/putrescine ABC transporter ATP-binding protein compare
AO353_12560 -0.8 -2.4 type II secretion system protein GspG compare
AO353_19170 -0.8 -3.2 histidine kinase compare
AO353_05125 -0.8 -1.1 BolA family transcriptional regulator compare
AO353_08180 -0.8 -3.8 homoserine O-acetyltransferase compare
AO353_16345 -0.8 -1.4 energy transducer TonB compare
AO353_09050 -0.8 -0.8 recombinase XerC compare
AO353_22215 -0.8 -1.0 hypothetical protein compare
AO353_20695 -0.8 -1.7 O-succinylhomoserine sulfhydrylase compare
AO353_21995 -0.8 -4.3 nitric oxide reductase conserved
AO353_22725 -0.8 -1.7 hypothetical protein compare
AO353_20860 -0.8 -0.9 hypothetical protein compare
AO353_06735 -0.8 -2.7 thioredoxin compare
AO353_11305 -0.8 -1.7 adenylylsulfate kinase compare
AO353_27550 -0.8 -1.0 hypothetical protein compare
AO353_22585 -0.8 -2.8 HxlR family transcriptional regulator compare
AO353_16710 -0.8 -1.0 hypothetical protein compare
AO353_22000 -0.8 -2.3 nitric oxide reductase activation protein NorD compare
AO353_28945 -0.8 -1.0 potassium-transporting ATPase subunit B compare
AO353_09265 -0.8 -1.5 hypothetical protein compare
AO353_25665 -0.8 -2.0 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
AO353_05080 -0.8 -2.8 sulfate adenylyltransferase compare
AO353_21935 -0.8 -0.9 nitrite reductase compare
AO353_18450 -0.8 -1.8 hypothetical protein compare
AO353_14735 -0.8 -1.9 hypothetical protein compare
AO353_01795 -0.7 -1.0 hypothetical protein compare
AO353_27350 -0.7 -1.2 hypothetical protein compare
AO353_17180 -0.7 -1.6 hypothetical protein compare
AO353_04445 -0.7 -1.7 GntR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N2E3

For denitrifying Sodium pyruvate across organisms