Experiment set11IT024 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and L-Glutamine (N); with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS01620 -4.8 -10.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04470 -4.2 -14.7 histidinol dehydrogenase compare
PFLU_RS01900 -4.1 -11.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS02490 -3.7 -14.8 phosphoserine phosphatase SerB compare
PFLU_RS13580 -3.6 -6.1 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS08125 -3.5 -4.9 integration host factor subunit beta compare
PFLU_RS01605 -3.4 -10.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20515 -3.3 -3.9 amidophosphoribosyltransferase compare
PFLU_RS02590 -3.3 -11.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01625 -3.3 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS09055 -3.3 -3.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23070 -3.1 -1.7 50S ribosomal protein L32 compare
PFLU_RS25715 -2.9 -11.1 RNA polymerase-binding protein DksA compare
PFLU_RS01610 -2.7 -13.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS05690 -2.6 -3.0 Grx4 family monothiol glutaredoxin compare
PFLU_RS00175 -2.6 -11.3 tryptophan synthase subunit alpha compare
PFLU_RS04445 -2.6 -8.3 ABC transporter substrate-binding protein compare
PFLU_RS20540 -2.5 -10.6 phosphoribosylanthranilate isomerase compare
PFLU_RS04440 -2.5 -12.0 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS27370 -2.5 -10.7 anthranilate phosphoribosyltransferase compare
PFLU_RS04435 -2.5 -8.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS04465 -2.4 -8.6 ATP phosphoribosyltransferase compare
PFLU_RS00180 -2.4 -8.3 tryptophan synthase subunit beta compare
PFLU_RS22095 -2.3 -14.6 GTP diphosphokinase compare
PFLU_RS28165 -2.3 -12.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04430 -2.3 -9.6 ATP-binding cassette domain-containing protein compare
PFLU_RS20510 -2.3 -12.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25585 -2.2 -4.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS02275 -2.2 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS25595 -2.2 -3.0 exodeoxyribonuclease V subunit gamma compare
PFLU_RS07785 -2.1 -10.3 VacJ family lipoprotein compare
PFLU_RS19165 -2.1 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS19170 -2.0 -4.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS24555 -2.0 -5.1 thioredoxin fold domain-containing protein compare
PFLU_RS28695 -2.0 -6.3 phosphoglycerate dehydrogenase compare
PFLU_RS22105 -1.8 -4.2 cysteine synthase CysM compare
PFLU_RS29515 -1.8 -9.1 RidA family protein compare
PFLU_RS22595 -1.7 -3.6 OmpA family protein compare
PFLU_RS02775 -1.7 -1.3 urease accessory protein UreF compare
PFLU_RS28615 -1.7 -8.9 heavy metal translocating P-type ATPase compare
PFLU_RS18530 -1.7 -4.8 DNA translocase FtsK compare
PFLU_RS13010 -1.6 -4.3 Fe-S biogenesis protein NfuA compare
PFLU_RS23065 -1.6 -5.1 phosphate acyltransferase PlsX compare
PFLU_RS24205 -1.6 -2.4 DNA binding protein compare
PFLU_RS08165 -1.5 -2.5 acyl carrier protein compare
PFLU_RS28390 -1.5 -7.3 methionine biosynthesis protein MetW compare
PFLU_RS01955 -1.5 -6.6 DUF971 domain-containing protein compare
PFLU_RS24095 -1.5 -3.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS05655 -1.4 -3.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS08650 -1.4 -1.8 heme exporter protein CcmB compare
PFLU_RS25360 -1.4 -5.0 glutamate 5-kinase compare
PFLU_RS07665 -1.4 -2.6 type I DNA topoisomerase compare
PFLU_RS26565 -1.4 -1.8 rRNA maturation RNase YbeY compare
PFLU_RS00695 -1.4 -1.4 DUF2789 domain-containing protein compare
PFLU_RS02565 -1.3 -5.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS00530 -1.3 -1.2 DUF2388 domain-containing protein compare
PFLU_RS27365 -1.3 -5.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS18885 -1.3 -2.2 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS13540 -1.3 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS17850 -1.2 -3.7 hypothetical protein compare
PFLU_RS12980 -1.2 -6.1 nitrite/sulfite reductase compare
PFLU_RS24085 -1.2 -3.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS27475 -1.2 -6.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS28385 -1.2 -7.2 homoserine O-acetyltransferase compare
PFLU_RS22030 -1.2 -2.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS21985 -1.2 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS24125 -1.2 -4.4 cold-shock protein compare
PFLU_RS03675 -1.2 -5.6 acyloxyacyl hydrolase compare
PFLU_RS12975 -1.2 -3.2 DUF934 domain-containing protein compare
PFLU_RS14805 -1.1 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS09500 -1.1 -0.9 hypothetical protein compare
PFLU_RS29480 -1.1 -6.6 exodeoxyribonuclease III compare
PFLU_RS15410 -1.1 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS28120 -1.1 -2.4 DUF1090 domain-containing protein compare
PFLU_RS25645 -1.1 -2.3 acetolactate synthase small subunit compare
PFLU_RS02365 -1.1 -6.7 glycosyltransferase compare
PFLU_RS31010 -1.1 -1.5 transposase compare
PFLU_RS12260 -1.1 -2.0 hypothetical protein compare
PFLU_RS25205 -1.1 -3.7 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS04015 -1.1 -1.5 1-phosphofructokinase compare
PFLU_RS05630 -1.0 -1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS02625 -1.0 -6.6 ribonuclease R compare
PFLU_RS16445 -1.0 -2.3 PIG-L family deacetylase compare
PFLU_RS10210 -1.0 -4.9 oligosaccharide flippase family protein compare
PFLU_RS08180 -1.0 -3.3 ketoacyl-ACP synthase III compare
PFLU_RS30790 -1.0 -2.5 hypothetical protein compare
PFLU_RS13225 -1.0 -3.0 hypothetical protein compare
PFLU_RS28895 -1.0 -1.6 DUF2388 domain-containing protein compare
PFLU_RS06310 -1.0 -4.4 sigma E protease regulator RseP compare
PFLU_RS19730 -1.0 -2.2 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS31530 -0.9 -0.9 transposase compare
PFLU_RS04070 -0.9 -2.7 peptide chain release factor 3 compare
PFLU_RS18505 -0.9 -5.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS04565 -0.9 -0.9 TMEM165/GDT1 family protein compare
PFLU_RS08490 -0.9 -1.2 DEAD/DEAH box helicase compare
PFLU_RS22455 -0.9 -4.2 hypothetical protein compare
PFLU_RS28655 -0.9 -6.5 HAD family hydrolase compare
PFLU_RS22070 -0.9 -2.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS20290 -0.9 -1.5 integration host factor subunit alpha compare
PFLU_RS05780 -0.9 -5.8 helix-turn-helix transcriptional regulator compare
PFLU_RS31785 -0.9 -2.8 hypothetical protein compare
PFLU_RS21525 -0.9 -5.6 RNA polymerase factor sigma-70 compare
PFLU_RS25760 -0.9 -5.8 glucose-6-phosphate isomerase compare
PFLU_RS25740 -0.9 -3.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS30505 -0.9 -3.6 hypothetical protein compare
PFLU_RS28820 -0.9 -1.3 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS24355 -0.9 -2.9 heme oxygenase compare
PFLU_RS22190 -0.9 -1.2 hypothetical protein compare
PFLU_RS22520 -0.9 -1.6 GntR family transcriptional regulator compare
PFLU_RS21925 -0.9 -2.4 YecA family protein compare
PFLU_RS12450 -0.9 -5.4 cyclic peptide export ABC transporter compare
PFLU_RS24590 -0.9 -2.4 cytochrome c assembly protein compare
PFLU_RS00870 -0.9 -1.7 hypothetical protein compare
PFLU_RS05020 -0.8 -1.2 DUF1120 domain-containing protein compare
PFLU_RS00520 -0.8 -1.5 DUF2388 domain-containing protein compare
PFLU_RS30165 -0.8 -3.9 ParA family protein compare
PFLU_RS02880 -0.8 -3.0 urease accessory protein UreD compare
PFLU_RS01315 -0.8 -1.8 Hsp33 family molecular chaperone HslO compare
PFLU_RS07805 -0.8 -6.3 transaldolase compare
PFLU_RS04370 -0.8 -4.6 superoxide dismutase compare
PFLU_RS02825 -0.8 -0.9 phosphate starvation-inducible protein PsiF compare
PFLU_RS06165 -0.8 -1.6 hypothetical protein compare
PFLU_RS08185 -0.8 -4.8 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS04395 -0.8 -3.5 ribosome-associated translation inhibitor RaiA compare
PFLU_RS08410 -0.8 -3.6 HTH-type transcriptional regulator CysB compare
PFLU_RS30160 -0.8 -1.3 ParB/RepB/Spo0J family partition protein compare
PFLU_RS11545 -0.8 -3.0 amino acid synthesis family protein compare
PFLU_RS24765 -0.8 -5.1 2-isopropylmalate synthase compare
PFLU_RS13750 -0.8 -1.4 hypothetical protein compare
PFLU_RS18670 -0.8 -1.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS30470 -0.8 -1.8 addiction module antidote protein compare
PFLU_RS09430 -0.7 -3.0 IS66 family insertion sequence element accessory protein TnpB compare
PFLU_RS01485 -0.7 -4.8 cellulase compare
PFLU_RS19435 -0.7 -3.6 efflux transporter outer membrane subunit compare
PFLU_RS18930 -0.7 -3.5 exodeoxyribonuclease III compare
PFLU_RS17160 -0.7 -1.0 hypothetical protein compare
PFLU_RS08900 -0.7 -5.4 serine protein kinase PrkA compare
PFLU_RS03995 -0.7 -1.0 hypothetical protein compare
PFLU_RS25755 -0.7 -2.1 pantoate--beta-alanine ligase compare
PFLU_RS02980 -0.7 -1.0 precorrin-8X methylmutase compare
PFLU_RS11490 -0.7 -2.4 ABC transporter ATP-binding protein compare
PFLU_RS15970 -0.7 -2.2 DUF861 domain-containing protein compare
PFLU_RS26735 -0.7 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS14545 -0.7 -1.6 hypothetical protein compare
PFLU_RS22740 -0.7 -2.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS20955 -0.7 -1.4 DUF1028 domain-containing protein compare
PFLU_RS07780 -0.7 -1.3 hypothetical protein compare
PFLU_RS00195 -0.7 -1.4 dodecin domain-containing protein compare
PFLU_RS29580 -0.7 -1.7 ABC transporter ATP-binding protein compare
PFLU_RS03960 -0.7 -1.7 tRNA-Thr compare
PFLU_RS21185 -0.7 -2.8 polyphosphate:AMP phosphotransferase compare
PFLU_RS08100 -0.7 -2.7 histidinol-phosphate transaminase compare
PFLU_RS23585 -0.7 -3.2 GntP family permease compare
PFLU_RS22010 -0.7 -3.0 threonine-phosphate decarboxylase compare
PFLU_RS06620 -0.7 -2.1 DUF2282 domain-containing protein compare
PFLU_RS24375 -0.7 -4.2 c-type cytochrome compare
PFLU_RS25955 -0.7 -1.2 hypothetical protein compare
PFLU_RS03665 -0.7 -2.5 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS04140 -0.7 -1.7 response regulator transcription factor compare
PFLU_RS24300 -0.7 -1.9 hypothetical protein compare
PFLU_RS12205 -0.7 -1.4 DNA binding protein compare
PFLU_RS02175 -0.7 -2.4 hypothetical protein compare
PFLU_RS29560 -0.7 -0.7 hypothetical protein compare
PFLU_RS12495 -0.7 -2.8 macrolide transporter subunit MacA compare
PFLU_RS03785 -0.7 -2.5 DUF3565 domain-containing protein compare
PFLU_RS15005 -0.7 -1.0 hypothetical protein compare
PFLU_RS30550 -0.7 -2.2 IS66 family insertion sequence hypothetical protein compare
PFLU_RS27305 -0.6 -3.1 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS26690 -0.6 -2.3 hypothetical protein compare
PFLU_RS13975 -0.6 -1.6 hypothetical protein compare
PFLU_RS16285 -0.6 -2.3 hypothetical protein compare
PFLU_RS00875 -0.6 -2.4 hypothetical protein compare
PFLU_RS31755 -0.6 -1.0 hypothetical protein compare
PFLU_RS11850 -0.6 -1.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS16665 -0.6 -2.5 cysteine hydrolase compare
PFLU_RS07540 -0.6 -1.0 class II glutamine amidotransferase compare
PFLU_RS18225 -0.6 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS30535 -0.6 -2.1 DUF2897 family protein compare
PFLU_RS12010 -0.6 -3.0 amino acid metabolite efflux pump compare
PFLU_RS30795 -0.6 -3.3 tail fiber domain-containing protein compare
PFLU_RS03035 -0.6 -2.1 50S ribosomal protein L11 methyltransferase compare
PFLU_RS12915 -0.6 -1.7 methyltransferase domain-containing protein compare
PFLU_RS16390 -0.6 -1.1 DUF411 domain-containing protein compare
PFLU_RS23220 -0.6 -1.5 tRNA-Arg compare
PFLU_RS14450 -0.6 -1.7 AzlD domain-containing protein compare
PFLU_RS01895 -0.6 -2.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS23445 -0.6 -1.7 DUF1003 domain-containing protein compare
PFLU_RS24090 -0.6 -1.7 Holliday junction branch migration protein RuvA compare
PFLU_RS08675 -0.6 -1.4 DsbE family thiol:disulfide interchange protein compare
PFLU_RS19520 -0.6 -1.5 substrate-binding domain-containing protein compare
PFLU_RS08895 -0.6 -3.8 VacJ family lipoprotein compare
PFLU_RS09535 -0.6 -0.8 TIGR03750 family conjugal transfer protein compare
PFLU_RS18005 -0.6 -1.8 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS11675 -0.6 -2.6 glutathione S-transferase family protein compare
PFLU_RS25480 -0.6 -2.5 muconate cycloisomerase compare
PFLU_RS24370 -0.6 -1.9 NAD(P)H nitroreductase compare
PFLU_RS30015 -0.6 -3.8 class I SAM-dependent methyltransferase compare
PFLU_RS05380 -0.6 -1.6 group 1 truncated hemoglobin compare
PFLU_RS02670 -0.6 -1.8 hypothetical protein compare
PFLU_RS23920 -0.6 -1.0 septation protein A compare


Specific Phenotypes

For 3 genes in this experiment

For no stress control Sucrose in Pseudomonas fluorescens SBW25-INTG

For no stress control Sucrose across organisms