Experiment set11IT024 for Burkholderia phytofirmans PsJN

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS33455 -7.8 -2.3 protocatechuate 3,4-dioxygenase subunit beta compare
BPHYT_RS01590 -7.6 -6.7 methionine biosynthesis protein MetW compare
BPHYT_RS04725 -7.3 -5.1 sulfite reductase compare
BPHYT_RS16835 -7.3 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS21420 -7.2 -4.5 3-oxoadipate CoA-transferase subunit B compare
BPHYT_RS06555 -6.9 -4.8 ketol-acid reductoisomerase compare
BPHYT_RS18320 -6.3 -9.7 orotate phosphoribosyltransferase compare
BPHYT_RS17670 -6.2 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33875 -6.1 -7.3 tryptophan synthase subunit alpha compare
BPHYT_RS17675 -6.1 -1.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17690 -6.1 -8.8 imidazole glycerol phosphate synthase compare
BPHYT_RS33900 -6.1 -9.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS29385 -6.0 -4.2 acetyl-CoA acetyltransferase conserved
BPHYT_RS16270 -6.0 -3.9 phosphoglycerate kinase compare
BPHYT_RS17395 -6.0 -1.8 anthranilate synthase subunit II compare
BPHYT_RS14910 -6.0 -10.7 chorismate mutase compare
BPHYT_RS21425 -5.9 -2.5 3-carboxy-cis,cis-muconate cycloisomerase compare
BPHYT_RS16245 -5.9 -7.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS12055 -5.8 -18.4 phosphoenolpyruvate synthase compare
BPHYT_RS17685 -5.7 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17400 -5.7 -6.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS33880 -5.6 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14195 -5.6 -3.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS06900 -5.6 -6.6 aspartate aminotransferase compare
BPHYT_RS06545 -5.5 -10.7 acetolactate synthase compare
BPHYT_RS15920 -5.5 -12.3 argininosuccinate synthase compare
BPHYT_RS09515 -5.5 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06405 -5.5 -9.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS33835 -5.5 -6.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS02590 -5.5 -7.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14915 -5.4 -7.4 phosphoserine aminotransferase compare
BPHYT_RS08955 -5.4 -5.3 homoserine dehydrogenase compare
BPHYT_RS14190 -5.3 -10.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16905 -5.3 -7.2 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17855 -5.3 -12.3 glutamate synthase compare
BPHYT_RS33915 -5.3 -7.2 isopropylmalate isomerase compare
BPHYT_RS21415 -5.2 -3.6 3-oxoadipate CoA-transferase subunit A compare
BPHYT_RS33865 -5.2 -7.9 tryptophan synthase alpha chain compare
BPHYT_RS09500 -5.1 -10.2 glucose-6-phosphate isomerase compare
BPHYT_RS13705 -5.1 -4.7 chorismate synthase compare
BPHYT_RS33980 -4.9 -11.5 aconitate hydratase compare
BPHYT_RS03150 -4.9 -10.1 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS04740 -4.9 -6.7 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS12845 -4.9 -15.6 ATPase compare
BPHYT_RS33645 -4.8 -4.7 homoserine kinase compare
BPHYT_RS15620 -4.7 -4.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS15915 -4.7 -9.6 ornithine carbamoyltransferase compare
BPHYT_RS14895 -4.7 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS15890 -4.6 -1.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS03535 -4.5 -4.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12530 -4.5 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17890 -4.5 -2.2 shikimate kinase compare
BPHYT_RS01595 -4.4 -7.3 homoserine O-acetyltransferase compare
BPHYT_RS33840 -4.4 -9.0 amidophosphoribosyltransferase compare
BPHYT_RS02610 -4.4 -3.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17390 -4.4 -10.2 anthranilate synthase subunit I compare
BPHYT_RS10100 -4.4 -5.4 dihydroxy-acid dehydratase compare
BPHYT_RS15710 -4.3 -2.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS15645 -4.2 -7.2 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS17680 -4.2 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS03625 -4.2 -9.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS15650 -4.1 -9.6 quinolinate synthetase compare
BPHYT_RS03640 -4.1 -4.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17715 -4.1 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS06610 -4.1 -1.7 triosephosphate isomerase compare
BPHYT_RS04965 -4.0 -6.6 ATP-binding protein compare
BPHYT_RS17405 -4.0 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS03645 -4.0 -2.6 tRNA dimethylallyltransferase compare
BPHYT_RS04720 -3.9 -6.7 transcriptional regulator compare
BPHYT_RS15640 -3.7 -15.4 L-aspartate oxidase compare
BPHYT_RS03570 -3.6 -6.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS17920 -3.6 -1.0 protein CyaY compare
BPHYT_RS03480 -3.6 -6.3 ferritin compare
BPHYT_RS16255 -3.6 -5.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS08565 -3.5 -1.4 dihydroorotate dehydrogenase compare
BPHYT_RS16675 -3.4 -2.2 dihydroorotase compare
BPHYT_RS17700 -3.4 -3.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04745 -3.4 -3.4 sulfate adenylyltransferase compare
BPHYT_RS12985 -3.3 -2.5 amino acid acetyltransferase compare
BPHYT_RS04750 -3.3 -3.0 uroporphyrin-III C-methyltransferase compare
BPHYT_RS14855 -3.3 -2.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04955 -3.3 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS15570 -3.3 -8.2 NAD-dependent dehydratase compare
BPHYT_RS17380 -3.3 -6.3 ribulose-phosphate 3-epimerase compare
BPHYT_RS33460 -3.3 -0.9 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS21505 -3.2 -2.7 amidohydrolase compare
BPHYT_RS08960 -3.2 -1.6 threonine synthase compare
BPHYT_RS33920 -3.1 -7.2 type II citrate synthase compare
BPHYT_RS16555 -3.0 -3.4 cation transporter compare
BPHYT_RS16840 -3.0 -2.9 transketolase compare
BPHYT_RS12465 -3.0 -2.8 inositol monophosphatase compare
BPHYT_RS04730 -3.0 -4.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS30245 -2.9 -9.9 porin compare
BPHYT_RS36275 -2.8 -2.6 hypothetical protein compare
BPHYT_RS09480 -2.8 -1.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08850 -2.8 -1.6 transcriptional regulator compare
BPHYT_RS17885 -2.8 -3.9 3-dehydroquinate synthase compare
BPHYT_RS15670 -2.8 -6.6 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS09315 -2.8 -1.1 chemotaxis protein CheY compare
BPHYT_RS08665 -2.8 -1.1 hypothetical protein compare
BPHYT_RS30250 -2.7 -4.1 4-hydroxybenzoate transporter compare
BPHYT_RS12900 -2.7 -2.0 transposase compare
BPHYT_RS06685 -2.7 -1.7 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS13220 -2.6 -5.5 phosphomethylpyrimidine synthase compare
BPHYT_RS12615 -2.6 -1.5 dihydrodipicolinate synthase compare
BPHYT_RS11635 -2.6 -1.0 RNA polymerase subunit sigma-24 compare
BPHYT_RS20665 -2.5 -1.3 LysR family transcriptional regulator compare
BPHYT_RS20155 -2.5 -1.3 hypothetical protein compare
BPHYT_RS06530 -2.4 -2.7 membrane protein compare
BPHYT_RS21625 -2.4 -1.0 LysR family transcriptional regulator compare
BPHYT_RS14845 -2.2 -1.4 cysteine synthase compare
BPHYT_RS29485 -2.2 -2.2 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS07900 -2.2 -2.2 hypothetical protein compare
BPHYT_RS09145 -2.2 -9.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS20900 -2.2 -2.7 phytanoyl-CoA dioxygenase compare
BPHYT_RS02165 -2.1 -4.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
BPHYT_RS04455 -2.1 -1.0 glycosyl transferase compare
BPHYT_RS04005 -2.1 -2.3 GDP-L-fucose synthase compare
BPHYT_RS17520 -2.1 -3.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS22000 -2.0 -1.9 hypothetical protein compare
BPHYT_RS03725 -2.0 -0.9 serine hydroxymethyltransferase compare
BPHYT_RS06985 -2.0 -6.7 fumarate hydratase compare
BPHYT_RS35400 -2.0 -2.1 ABC transporter compare
BPHYT_RS28300 -2.0 -1.3 histone nucleoid-structuring protein H-NS compare
BPHYT_RS04290 -2.0 -1.3 glycosyl transferase family 2 compare
BPHYT_RS13890 -1.9 -2.6 RpiR family transcriptional regulator compare
BPHYT_RS06390 -1.9 -3.6 ribosome-associated protein IOJAP compare
BPHYT_RS26490 -1.9 -1.1 hypothetical protein compare
BPHYT_RS23225 -1.9 -1.6 hypothetical protein compare
BPHYT_RS17050 -1.9 -2.5 hypothetical protein compare
BPHYT_RS20940 -1.9 -3.4 citrate synthase compare
BPHYT_RS35245 -1.9 -1.7 hypothetical protein compare
BPHYT_RS22265 -1.9 -1.1 hypothetical protein compare
BPHYT_RS27060 -1.9 -1.2 photosystem reaction center subunit H compare
BPHYT_RS04820 -1.9 -6.5 LysR family transcriptional regulator compare
BPHYT_RS25770 -1.8 -1.2 hypothetical protein compare
BPHYT_RS05960 -1.8 -5.2 endoribonuclease L-PSP compare
BPHYT_RS08125 -1.8 -7.2 ATPase compare
BPHYT_RS20070 -1.8 -2.6 hypothetical protein compare
BPHYT_RS02860 -1.8 -0.7 membrane protein compare
BPHYT_RS06375 -1.8 -4.8 ribonuclease compare
BPHYT_RS04370 -1.8 -1.0 glycosyl transferase compare
BPHYT_RS10095 -1.7 -1.3 integrase compare
BPHYT_RS11705 -1.7 -1.3 hypothetical protein compare
BPHYT_RS22500 -1.7 -3.2 transcriptional regulator compare
BPHYT_RS20475 -1.7 -1.6 hypothetical protein compare
BPHYT_RS27890 -1.7 -1.2 hypothetical protein compare
BPHYT_RS05730 -1.7 -3.0 hypothetical protein compare
BPHYT_RS08060 -1.6 -3.7 ribosome maturation factor RimP compare
BPHYT_RS14660 -1.6 -2.1 hypothetical protein compare
BPHYT_RS34810 -1.6 -2.1 RND transporter compare
BPHYT_RS34815 -1.6 -1.8 ABC transporter compare
BPHYT_RS16135 -1.6 -4.4 ABC transporter ATP-binding protein compare
BPHYT_RS14755 -1.6 -2.3 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS17095 -1.6 -1.7 proline--tRNA ligase compare
BPHYT_RS32880 -1.5 -1.2 alanine acetyltransferase compare
BPHYT_RS14900 -1.5 -2.0 prephenate dehydrogenase compare
BPHYT_RS02865 -1.5 -1.9 hypothetical protein compare
BPHYT_RS10005 -1.5 -1.4 hypothetical protein compare
BPHYT_RS06400 -1.5 -3.3 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS00770 -1.5 -0.9 conjugal transfer protein TraC compare
BPHYT_RS01730 -1.5 -1.9 serine/threonine protein kinase compare
BPHYT_RS33030 -1.5 -0.9 hypothetical protein compare
BPHYT_RS01455 -1.5 -0.9 peptide deformylase compare
BPHYT_RS12990 -1.5 -1.7 iron transporter compare
BPHYT_RS21075 -1.5 -1.8 (2Fe-2S)-binding protein compare
BPHYT_RS18705 -1.4 -1.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS23650 -1.4 -0.7 hypothetical protein compare
BPHYT_RS22930 -1.4 -1.0 type II secretion system protein compare
BPHYT_RS01315 -1.4 -1.9 cupin compare
BPHYT_RS08340 -1.4 -0.4 chemotaxis protein CheY compare
BPHYT_RS25095 -1.4 -1.7 AraC family transcriptional regulator compare
BPHYT_RS22940 -1.4 -1.3 pilus assembly protein TadE compare
BPHYT_RS23035 -1.4 -1.8 hypothetical protein compare
BPHYT_RS19680 -1.4 -7.6 glutamate--cysteine ligase compare
BPHYT_RS00815 -1.4 -0.8 hypothetical protein compare
BPHYT_RS15615 -1.4 -2.6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS20095 -1.4 -0.8 transcriptional regulator compare
BPHYT_RS05285 -1.4 -1.0 hypothetical protein compare
BPHYT_RS08950 -1.4 -4.5 aminotransferase compare
BPHYT_RS16250 -1.4 -0.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS20000 -1.4 -1.8 serine/threonine protein kinase compare
BPHYT_RS16880 -1.4 -0.8 malic enzyme compare
BPHYT_RS11080 -1.4 -1.5 hypothetical protein compare
BPHYT_RS33905 -1.4 -0.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS16175 -1.4 -1.1 hemolysin D compare
BPHYT_RS20590 -1.4 -2.4 methionine sulfoxide reductase A compare
BPHYT_RS26975 -1.4 -1.7 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS28905 -1.4 -1.0 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS06175 -1.3 -4.4 LPS biosynthesis compare
BPHYT_RS02965 -1.3 -2.1 membrane protein compare
BPHYT_RS17525 -1.3 -1.9 glutaredoxin compare
BPHYT_RS26685 -1.3 -1.4 precorrin-8X methylmutase compare
BPHYT_RS07930 -1.3 -2.7 hypothetical protein compare
BPHYT_RS26925 -1.3 -1.5 NIPSNAP family containing protein compare
BPHYT_RS02160 -1.3 -2.5 8-amino-7-oxononanoate synthase compare
BPHYT_RS28575 -1.3 -1.0 transcriptional regulator compare
BPHYT_RS08385 -1.3 -1.2 secretion protein compare
BPHYT_RS17640 -1.3 -1.5 2-alkenal reductase compare
BPHYT_RS09355 -1.3 -1.3 LysR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Protocatechuic Acid in Burkholderia phytofirmans PsJN

For carbon source Protocatechuic Acid across organisms