Experiment set11IT022 for Burkholderia phytofirmans PsJN

Compare to:

Sebacic acid carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -7.5 -4.3 phosphoglycerate kinase compare
BPHYT_RS33875 -7.4 -5.1 tryptophan synthase subunit alpha compare
BPHYT_RS06405 -6.8 -8.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS12530 -6.7 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16245 -6.6 -6.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17690 -6.6 -11.9 imidazole glycerol phosphate synthase compare
BPHYT_RS17670 -6.3 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17675 -6.3 -1.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17395 -6.1 -1.8 anthranilate synthase subunit II compare
BPHYT_RS16835 -6.0 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17400 -6.0 -9.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS12815 -6.0 -7.2 IclR family transcriptional regulator compare
BPHYT_RS04955 -5.9 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS02590 -5.9 -7.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14190 -5.9 -9.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS18320 -5.9 -12.5 orotate phosphoribosyltransferase compare
BPHYT_RS15920 -5.9 -11.2 argininosuccinate synthase compare
BPHYT_RS08955 -5.8 -4.0 homoserine dehydrogenase compare
BPHYT_RS17685 -5.6 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS09515 -5.6 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS03150 -5.5 -12.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS25035 -5.5 -7.7 long-chain fatty acid--CoA ligase compare
BPHYT_RS06545 -5.5 -13.7 acetolactate synthase compare
BPHYT_RS04965 -5.5 -7.5 ATP-binding protein compare
BPHYT_RS33880 -5.4 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06900 -5.3 -6.3 aspartate aminotransferase compare
BPHYT_RS17680 -5.2 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS28705 -5.2 -1.5 IclR family transcriptional regulator compare
BPHYT_RS33645 -5.1 -3.6 homoserine kinase compare
BPHYT_RS14915 -5.1 -4.7 phosphoserine aminotransferase compare
BPHYT_RS15915 -5.1 -10.3 ornithine carbamoyltransferase compare
BPHYT_RS06555 -5.0 -6.9 ketol-acid reductoisomerase compare
BPHYT_RS03645 -5.0 -2.8 tRNA dimethylallyltransferase compare
BPHYT_RS17855 -5.0 -16.5 glutamate synthase compare
BPHYT_RS01435 -4.9 -22.7 LysR family transcriptional regulator compare
BPHYT_RS14895 -4.9 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS15620 -4.8 -4.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03640 -4.8 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS25030 -4.7 -5.2 gluconate 2-dehydrogenase compare
BPHYT_RS17890 -4.6 -2.3 shikimate kinase compare
BPHYT_RS33865 -4.6 -8.7 tryptophan synthase alpha chain compare
BPHYT_RS33840 -4.6 -9.8 amidophosphoribosyltransferase compare
BPHYT_RS12985 -4.6 -2.6 amino acid acetyltransferase compare
BPHYT_RS17390 -4.5 -12.6 anthranilate synthase subunit I compare
BPHYT_RS01595 -4.5 -7.8 homoserine O-acetyltransferase compare
BPHYT_RS01455 -4.5 -1.3 peptide deformylase compare
BPHYT_RS17380 -4.5 -9.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS04740 -4.4 -8.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS12845 -4.4 -14.1 ATPase compare
BPHYT_RS33900 -4.3 -10.1 3-isopropylmalate dehydrogenase compare
BPHYT_RS02610 -4.3 -4.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17700 -4.3 -3.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS16255 -4.3 -2.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS01590 -4.3 -6.0 methionine biosynthesis protein MetW compare
BPHYT_RS09315 -4.2 -1.2 chemotaxis protein CheY compare
BPHYT_RS13705 -4.2 -5.1 chorismate synthase compare
BPHYT_RS06610 -4.2 -1.6 triosephosphate isomerase compare
BPHYT_RS33915 -4.1 -5.8 isopropylmalate isomerase compare
BPHYT_RS17405 -4.1 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS12285 -4.0 -7.1 isocitrate lyase compare
BPHYT_RS04725 -4.0 -6.9 sulfite reductase compare
BPHYT_RS33535 -4.0 -18.9 RNA polymerase sigma factor RpoD compare
BPHYT_RS04730 -4.0 -4.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS33835 -4.0 -7.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS29520 -3.9 -1.1 hypothetical protein compare
BPHYT_RS17715 -3.8 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS16905 -3.8 -4.7 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS14195 -3.7 -3.1 carbamoyl phosphate synthase small subunit compare
BPHYT_RS33905 -3.7 -1.5 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS15645 -3.7 -9.2 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS10100 -3.7 -5.8 dihydroxy-acid dehydratase compare
BPHYT_RS09500 -3.6 -5.6 glucose-6-phosphate isomerase compare
BPHYT_RS13220 -3.6 -6.4 phosphomethylpyrimidine synthase compare
BPHYT_RS16675 -3.6 -2.2 dihydroorotase compare
BPHYT_RS08565 -3.5 -1.4 dihydroorotate dehydrogenase compare
BPHYT_RS09565 -3.5 -1.4 acetyl-CoA acetyltransferase compare
BPHYT_RS17885 -3.3 -5.0 3-dehydroquinate synthase compare
BPHYT_RS13555 -3.3 -1.9 acyl-CoA dehydrogenase compare
BPHYT_RS06410 -3.2 -3.3 transcriptional regulator compare
BPHYT_RS30465 -3.2 -1.3 short-chain dehydrogenase compare
BPHYT_RS04720 -3.1 -3.6 transcriptional regulator compare
BPHYT_RS12465 -3.1 -4.7 inositol monophosphatase compare
BPHYT_RS04920 -3.0 -3.0 aspartate 1-decarboxylase compare
BPHYT_RS16085 -3.0 -3.8 DeoR faimly transcriptional regulator compare
BPHYT_RS15670 -3.0 -4.2 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS35885 -2.9 -4.7 hypothetical protein compare
BPHYT_RS03535 -2.8 -4.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS30415 -2.7 -2.1 AraC family transcriptional regulator compare
BPHYT_RS16840 -2.7 -2.9 transketolase compare
BPHYT_RS03625 -2.7 -9.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS18705 -2.6 -2.0 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS20970 -2.5 -1.7 hypothetical protein compare
BPHYT_RS08960 -2.5 -1.4 threonine synthase compare
BPHYT_RS04745 -2.4 -3.3 sulfate adenylyltransferase compare
BPHYT_RS14845 -2.4 -1.5 cysteine synthase compare
BPHYT_RS02865 -2.4 -2.3 hypothetical protein compare
BPHYT_RS13550 -2.4 -2.7 acyl-CoA dehydrogenase compare
BPHYT_RS06530 -2.3 -1.6 membrane protein compare
BPHYT_RS02965 -2.3 -2.4 membrane protein compare
BPHYT_RS16340 -2.3 -5.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS17095 -2.2 -2.0 proline--tRNA ligase compare
BPHYT_RS15650 -2.2 -8.7 quinolinate synthetase compare
BPHYT_RS29810 -2.2 -1.2 hexapeptide transferase compare
BPHYT_RS25770 -2.2 -1.1 hypothetical protein compare
BPHYT_RS03725 -2.1 -1.0 serine hydroxymethyltransferase compare
BPHYT_RS25780 -2.0 -0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS14910 -2.0 -7.1 chorismate mutase compare
BPHYT_RS34810 -2.0 -2.8 RND transporter compare
BPHYT_RS09280 -2.0 -1.3 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS11635 -2.0 -0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS13605 -2.0 -1.1 tRNA-Pro compare
BPHYT_RS16555 -2.0 -3.9 cation transporter compare
BPHYT_RS15640 -2.0 -9.3 L-aspartate oxidase compare
BPHYT_RS29945 -1.9 -2.2 histidine kinase compare
BPHYT_RS33540 -1.9 -2.1 hypothetical protein compare
BPHYT_RS06600 -1.9 -2.0 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS24585 -1.9 -2.1 NUDIX hydrolase compare
BPHYT_RS16345 -1.9 -2.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS35315 -1.9 -2.3 threonyl-tRNA synthetase compare
BPHYT_RS08385 -1.9 -1.4 secretion protein compare
BPHYT_RS09560 -1.9 -2.6 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS06375 -1.9 -3.6 ribonuclease compare
BPHYT_RS18590 -1.8 -0.9 hypothetical protein compare
BPHYT_RS05290 -1.8 -1.2 hypothetical protein compare
BPHYT_RS04455 -1.8 -1.1 glycosyl transferase compare
BPHYT_RS34640 -1.8 -2.2 TetR family transcriptional regulator compare
BPHYT_RS18760 -1.7 -2.8 flagellar biosynthesis protein FliT compare
BPHYT_RS26660 -1.7 -2.3 precorrin-4 C11-methyltransferase compare
BPHYT_RS09155 -1.7 -5.2 3-ketoacyl-ACP reductase compare
BPHYT_RS29620 -1.7 -0.9 hypothetical protein compare
BPHYT_RS14900 -1.7 -2.2 prephenate dehydrogenase compare
BPHYT_RS13540 -1.7 -7.0 LysR family transcriptional regulator compare
BPHYT_RS20790 -1.7 -1.5 TetR family transcriptional regulator compare
BPHYT_RS13545 -1.6 -4.4 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data) compare
BPHYT_RS08135 -1.6 -1.3 hypothetical protein compare
BPHYT_RS20070 -1.6 -2.6 hypothetical protein compare
BPHYT_RS08360 -1.6 -1.9 LysR family transcriptional regulator compare
BPHYT_RS02435 -1.6 -1.4 hypothetical protein compare
BPHYT_RS32525 -1.6 -1.2 hypothetical protein compare
BPHYT_RS21805 -1.6 -1.3 transcriptional regulator compare
BPHYT_RS28300 -1.6 -1.1 histone nucleoid-structuring protein H-NS compare
BPHYT_RS08405 -1.6 -1.2 hypothetical protein compare
BPHYT_RS01585 -1.6 -6.2 major facilitator superfamily protein compare
BPHYT_RS14835 -1.6 -5.1 deacetylase compare
BPHYT_RS03015 -1.6 -1.0 aldolase compare
BPHYT_RS20665 -1.6 -1.0 LysR family transcriptional regulator compare
BPHYT_RS01115 -1.6 -1.5 hypothetical protein compare
BPHYT_RS06975 -1.6 -1.5 glutamate racemase compare
BPHYT_RS03570 -1.6 -3.0 heat-inducible transcription repressor HrcA compare
BPHYT_RS07605 -1.5 -3.5 hypothetical protein compare
BPHYT_RS11680 -1.5 -1.4 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS20840 -1.5 -1.0 beta-lactamase compare
BPHYT_RS26390 -1.5 -0.8 antibiotic resistance protein compare
BPHYT_RS34445 -1.5 -2.3 GntR family transcriptional regulator compare
BPHYT_RS30485 -1.5 -1.0 ABC transporter ATP-binding protein compare
BPHYT_RS18255 -1.4 -1.8 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS09365 -1.4 -1.5 cytochrome C2 compare
BPHYT_RS33765 -1.4 -0.5 membrane protein compare
BPHYT_RS03280 -1.4 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS08340 -1.4 -0.4 chemotaxis protein CheY compare
BPHYT_RS26975 -1.4 -1.8 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS31125 -1.4 -2.0 hypothetical protein compare
BPHYT_RS11265 -1.4 -1.4 hypothetical protein compare
BPHYT_RS22485 -1.4 -3.3 NADP-dependent aryl-alcohol dehydrogenase compare
BPHYT_RS02285 -1.4 -3.8 cell division protein compare
BPHYT_RS28860 -1.4 -1.0 haloacid dehalogenase compare
BPHYT_RS28360 -1.4 -1.3 carboxymuconolactone decarboxylase compare
BPHYT_RS09650 -1.4 -1.9 hypothetical protein compare
BPHYT_RS17100 -1.4 -4.7 RNA pyrophosphohydrolase compare
BPHYT_RS32360 -1.3 -1.4 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS30860 -1.3 -1.5 sugar ABC transporter permease compare
BPHYT_RS33920 -1.3 -3.9 type II citrate synthase compare
BPHYT_RS33655 -1.3 -2.8 MarR family transcriptional regulator compare
BPHYT_RS03520 -1.3 -1.8 ATP--cobalamin adenosyltransferase compare
BPHYT_RS26925 -1.3 -1.1 NIPSNAP family containing protein compare
BPHYT_RS25935 -1.3 -1.6 type III secretion protein compare
BPHYT_RS10725 -1.3 -1.6 polyketide cyclase compare
BPHYT_RS28660 -1.3 -0.9 polyvinylalcohol dehydrogenase compare
BPHYT_RS08985 -1.3 -3.8 Rrf2 family transcriptional regulator compare
BPHYT_RS28280 -1.3 -1.9 hypothetical protein compare
BPHYT_RS08125 -1.3 -4.8 ATPase compare
BPHYT_RS09735 -1.3 -1.4 glycosyl transferase compare
BPHYT_RS08060 -1.2 -5.7 ribosome maturation factor RimP compare
BPHYT_RS21485 -1.2 -0.9 hypothetical protein compare
BPHYT_RS23030 -1.2 -1.0 gluconate 2-dehydrogenase compare
BPHYT_RS16975 -1.2 -3.3 shikimate 5-dehydrogenase compare
BPHYT_RS06685 -1.2 -1.7 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS20165 -1.2 -1.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS08245 -1.2 -4.0 anti-sigma factor compare
BPHYT_RS10925 -1.2 -1.1 aldehyde dehydrogenase compare
BPHYT_RS20440 -1.2 -1.2 IclR family transcriptional regulator compare
BPHYT_RS11810 -1.2 -1.3 LysR family transcriptional regulator compare
BPHYT_RS03235 -1.2 -1.5 enoyl-CoA hydratase compare
BPHYT_RS29800 -1.2 -1.5 hypothetical protein compare
BPHYT_RS35955 -1.2 -1.1 hypothetical protein compare
BPHYT_RS29485 -1.2 -1.8 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS03135 -1.2 -5.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS31690 -1.2 -2.4 hypothetical protein compare
BPHYT_RS24745 -1.2 -1.3 transcriptional regulator compare
BPHYT_RS05730 -1.2 -3.7 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sebacic acid in Burkholderia phytofirmans PsJN

For carbon source Sebacic acid across organisms