Experiment set11IT020 for Pseudomonas fluorescens FW300-N2E2

Compare to:

RCH2_defined

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -5.7 -3.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3630 -5.3 -3.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3253 -5.1 -3.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_77 -5.0 -3.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3783 -5.0 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -4.9 -4.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3782 -4.9 -9.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4564 -4.8 -10.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4279 -4.8 -15.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5728 -4.8 -6.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3752 -4.6 -20.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4048 -4.6 -8.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4826 -4.6 -7.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3382 -4.6 -8.7 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF compare
Pf6N2E2_5177 -4.5 -12.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3248 -4.5 -4.0 Probable transmembrane protein compare
Pf6N2E2_4597 -4.5 -6.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3612 -4.3 -3.0 HflK protein compare
Pf6N2E2_4278 -4.2 -14.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3839 -4.0 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3932 -4.0 -5.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_64 -3.9 -3.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3841 -3.9 -4.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2073 -3.9 -7.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3381 -3.9 -9.4 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE compare
Pf6N2E2_3751 -3.9 -12.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4277 -3.9 -11.7 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3826 -3.8 -6.4 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2129 -3.8 -4.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4047 -3.8 -5.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5175 -3.6 -5.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4825 -3.6 -8.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4596 -3.6 -10.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3940 -3.5 -11.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3251 -3.5 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3383 -3.5 -6.6 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF compare
Pf6N2E2_3610 -3.4 -5.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5723 -3.3 -7.0 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5176 -3.3 -4.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3384 -3.1 -6.5 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_5150 -3.1 -7.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3825 -3.1 -6.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5316 -3.0 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3252 -3.0 -7.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_50 -3.0 -6.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5605 -3.0 -2.7 FxsA protein compare
Pf6N2E2_66 -2.9 -8.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_302 -2.9 -6.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3380 -2.9 -9.7 L-lactate permease compare
Pf6N2E2_4624 -2.8 -1.1 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_2277 -2.7 -3.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2465 -2.7 -4.6 Cys regulon transcriptional activator CysB compare
Pf6N2E2_63 -2.7 -3.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2899 -2.7 -6.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_3627 -2.5 -7.7 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Pf6N2E2_2274 -2.5 -4.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3461 -2.5 -1.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3261 -2.5 -11.8 hypothetical protein compare
Pf6N2E2_5328 -2.5 -6.0 FIG00958649: hypothetical protein compare
Pf6N2E2_1239 -2.4 -8.0 Putative TEGT family carrier/transport protein compare
Pf6N2E2_4272 -2.4 -3.6 putative membrane protein compare
Pf6N2E2_1083 -2.4 -1.8 hypothetical protein compare
Pf6N2E2_3170 -2.4 -6.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5178 -2.3 -3.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2074 -2.3 -1.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2121 -2.3 -2.2 hypothetical protein compare
Pf6N2E2_4072 -2.3 -6.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5574 -2.3 -7.3 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_1014 -2.2 -1.6 Nitrate/nitrite transporter compare
Pf6N2E2_760 -2.2 -12.7 Na+/H+ antiporter NhaB compare
Pf6N2E2_1673 -2.2 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_5014 -2.2 -0.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5666 -2.2 -10.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3908 -2.2 -5.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2261 -2.1 -5.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_5704 -2.1 -4.3 Transcriptional regulatory protein PhoP compare
Pf6N2E2_3696 -2.1 -1.1 hypothetical protein compare
Pf6N2E2_2022 -2.0 -1.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3351 -2.0 -3.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3611 -2.0 -2.5 HflC protein compare
Pf6N2E2_2681 -2.0 -3.0 3-phosphoglycerate kinase compare
Pf6N2E2_5258 -2.0 -9.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2810 -2.0 -4.7 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_5579 -2.0 -7.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2286 -2.0 -2.5 FIG00953287: hypothetical protein compare
Pf6N2E2_2753 -1.9 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_1534 -1.9 -1.4 Probable transmembrane protein compare
Pf6N2E2_4162 -1.9 -4.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3872 -1.9 -2.7 hypothetical protein compare
Pf6N2E2_4599 -1.9 -2.5 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_2381 -1.9 -4.4 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_6093 -1.9 -2.5 hypothetical protein compare
Pf6N2E2_4988 -1.8 -3.5 Antiholin-like protein LrgA compare
Pf6N2E2_3323 -1.8 -2.7 hypothetical protein compare
Pf6N2E2_288 -1.8 -1.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3096 -1.8 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3941 -1.8 -1.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_237 -1.8 -2.3 hypothetical protein compare
Pf6N2E2_4579 -1.8 -1.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5676 -1.8 -3.8 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3255 -1.8 -3.7 YrbA protein compare
Pf6N2E2_5241 -1.8 -1.6 Aminopeptidase N compare
Pf6N2E2_4584 -1.7 -1.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5536 -1.7 -1.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_895 -1.7 -4.5 Transcriptional regulator, HxlR family compare
Pf6N2E2_3938 -1.7 -10.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2072 -1.7 -3.0 hypothetical protein compare
Pf6N2E2_4640 -1.7 -2.3 hypothetical protein compare
Pf6N2E2_5252 -1.7 -4.1 FIG00956396: hypothetical protein compare
Pf6N2E2_4394 -1.7 -4.6 Putrescine utilization regulator compare
Pf6N2E2_1606 -1.7 -5.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_4372 -1.7 -1.6 FIG00460773: hypothetical protein compare
Pf6N2E2_1776 -1.6 -2.4 Chemotaxis protein CheD compare
Pf6N2E2_3300 -1.6 -2.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5667 -1.6 -6.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2675 -1.6 -1.2 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5001 -1.6 -1.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_882 -1.6 -3.4 FIG00961517: hypothetical protein compare
Pf6N2E2_3933 -1.6 -7.1 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_2182 -1.6 -3.1 hypothetical protein compare
Pf6N2E2_2281 -1.6 -3.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2586 -1.6 -1.7 Hpt domain protein compare
Pf6N2E2_2823 -1.6 -5.2 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5919 -1.6 -3.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_3258 -1.6 -2.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3003 -1.6 -2.2 Bacteriophage protein GP46 compare
Pf6N2E2_1896 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_987 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_1450 -1.6 -2.2 FIG00960438: hypothetical protein compare
Pf6N2E2_3132 -1.6 -3.5 FIG00954548: hypothetical protein compare
Pf6N2E2_4298 -1.6 -3.4 Uncharacterized protein ImpB compare
Pf6N2E2_2588 -1.6 -2.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1987 -1.6 -2.1 hypothetical protein compare
Pf6N2E2_5575 -1.5 -2.5 Glycerol uptake facilitator protein compare
Pf6N2E2_2510 -1.5 -2.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5103 -1.5 -1.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3072 -1.5 -9.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4399 -1.5 -4.1 GGDEF domain/EAL domain protein compare
Pf6N2E2_3885 -1.5 -1.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_1545 -1.5 -2.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_906 -1.5 -2.5 ISPpu14, transposase Orf2 compare
Pf6N2E2_1056 -1.5 -0.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1444 -1.5 -3.0 Transcriptional regulator, LysR family compare
Pf6N2E2_5277 -1.4 -5.7 FIG00953110: hypothetical protein compare
Pf6N2E2_5342 -1.4 -1.6 21 kDa hemolysin precursor compare
Pf6N2E2_84 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_4074 -1.4 -12.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2509 -1.4 -2.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2970 -1.4 -2.4 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_3257 -1.4 -1.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2964 -1.4 -2.8 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_2514 -1.4 -3.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_1095 -1.4 -2.5 Opine oxidase subunit C compare
Pf6N2E2_4454 -1.4 -5.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5571 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_919 -1.4 -1.6 FIG00954373: hypothetical protein compare
Pf6N2E2_3820 -1.4 -2.3 hypothetical protein compare
Pf6N2E2_4762 -1.4 -1.3 Biotin synthesis protein BioH compare
Pf6N2E2_4476 -1.4 -3.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_3666 -1.4 -2.6 InaA protein compare
Pf6N2E2_464 -1.4 -1.5 Sensory histidine kinase QseC compare
Pf6N2E2_3899 -1.4 -6.9 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5520 -1.4 -6.0 Sensory box histidine kinase compare
Pf6N2E2_2424 -1.3 -3.4 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_1783 -1.3 -2.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_51 -1.3 -5.0 hypothetical protein compare
Pf6N2E2_4797 -1.3 -1.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2880 -1.3 -2.6 FIG00959696: hypothetical protein compare
Pf6N2E2_1935 -1.3 -1.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3138 -1.3 -3.2 YaeQ protein compare
Pf6N2E2_2852 -1.3 -4.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_2870 -1.3 -2.2 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_659 -1.3 -2.0 Transcriptional regulatory protein ompR compare
Pf6N2E2_1797 -1.3 -1.8 Transcriptional regulator compare
Pf6N2E2_3095 -1.3 -0.4 hypothetical protein compare
Pf6N2E2_2258 -1.3 -6.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_1383 -1.3 -3.3 YD repeat protein compare
Pf6N2E2_4359 -1.3 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3504 -1.3 -6.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_5793 -1.3 -3.5 Aspartyl aminopeptidase compare
Pf6N2E2_3077 -1.3 -2.6 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_5794 -1.3 -0.8 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5153 -1.3 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_5534 -1.3 -2.5 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4391 -1.2 -4.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_1141 -1.2 -2.4 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_3264 -1.2 -6.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5006 -1.2 -4.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2025 -1.2 -5.5 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_2746 -1.2 -3.9 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_831 -1.2 -2.3 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_1870 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_4508 -1.2 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_342 -1.2 -0.9 DNA-binding response regulator compare
Pf6N2E2_2646 -1.2 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_88 -1.2 -1.0 hypothetical protein compare
Pf6N2E2_3729 -1.2 -3.1 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_5669 -1.2 -4.4 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_5257 -1.2 -5.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2752 -1.2 -4.2 Exported zinc metalloprotease YfgC precursor compare


Specific Phenotypes

For 4 genes in this experiment