Experiment set11IT017 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Cimicifugoside H1 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.0 -3.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -4.4 -3.0 SirA-like protein compare
Psyr_1556 -3.6 -3.4 hypothetical protein compare
Psyr_1613 -3.5 -4.7 septum site-determining protein MinC compare
Psyr_4340 -3.5 -9.2 phosphomethylpyrimidine kinase, putative compare
Psyr_4203 -3.5 -2.4 SsrA-binding protein compare
Psyr_4740 -3.2 -6.8 thiazole-phosphate synthase compare
Psyr_4686 -3.2 -6.1 8-amino-7-oxononanoate synthase compare
Psyr_4822 -3.1 -4.9 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_3886 -3.1 -2.9 methionyl-tRNA synthetase compare
Psyr_4341 -2.9 -8.4 thiamine-phosphate diphosphorylase compare
Psyr_4683 -2.9 -4.7 dethiobiotin synthase compare
Psyr_4687 -2.8 -7.5 biotin synthase compare
Psyr_0849 -2.6 -10.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0454 -2.4 -6.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0475 -2.4 -2.3 Protein of unknown function YGGT compare
Psyr_3008 -2.3 -6.4 Undecaprenyl-diphosphatase compare
Psyr_4580 -2.3 -3.0 anthranilate phosphoribosyltransferase compare
Psyr_4754 -2.3 -3.3 16S rRNA m(2)G-966 methyltransferase compare
Psyr_1663 -2.3 -3.9 phosphoribosylanthranilate isomerase compare
Psyr_5132 -2.1 -4.1 Glucose-inhibited division protein A subfamily compare
Psyr_4362 -2.0 -4.3 Rare lipoprotein A compare
Psyr_0918 -2.0 -11.5 ABC transporter compare
Psyr_3152 -2.0 -1.7 hypothetical protein compare
Psyr_0917 -2.0 -10.2 ABC-2 compare
Psyr_4091 -2.0 -4.2 8-oxo-dGTPase compare
Psyr_4634 -1.9 -2.7 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_0259 -1.9 -4.3 Osmolarity sensor protein envZ compare
Psyr_0281 -1.9 -2.9 ABC transporter compare
Psyr_1373 -1.8 -2.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0574 -1.8 -5.5 protease FtsH subunit HflK compare
Psyr_0575 -1.7 -3.8 protease FtsH subunit HflC compare
Psyr_0282 -1.6 -5.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_5135 -1.5 -2.2 Protein of unknown function DUF37 compare
Psyr_2769 -1.5 -3.3 conserved hypothetical protein compare
Psyr_4884 -1.5 -4.6 Rhodanese-like protein compare
Psyr_0565 -1.5 -5.3 Protein of unknown function UPF0126 compare
Psyr_3854 -1.5 -1.9 OmpA/MotB compare
Psyr_2471 -1.5 -2.7 hydroxymethylglutaryl-CoA lyase compare
Psyr_4684 -1.4 -2.9 biotin synthesis protein BioC compare
Psyr_0255 -1.4 -2.5 glutamate-cysteine ligase compare
Psyr_4991 -1.4 -2.3 hypothetical protein compare
Psyr_1212 -1.4 -3.2 type III secretion protein HrpO compare
Psyr_0826 -1.4 -5.3 glucose-6-phosphate isomerase compare
Psyr_1460 -1.4 -3.4 hypothetical protein compare
Psyr_2854 -1.4 -3.9 conserved hypothetical protein compare
Psyr_1408 -1.3 -2.6 Holliday junction endonuclease RuvC compare
Psyr_1748 -1.3 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4627 -1.3 -1.6 dimethyladenosine transferase compare
Psyr_2346 -1.3 -4.2 conserved hypothetical protein compare
Psyr_2617 -1.3 -2.7 Secretion protein HlyD compare
Psyr_0383 -1.3 -1.1 Twin-arginine translocation protein TatB compare
Psyr_4622 -1.2 -4.0 Nucleotidyl transferase compare
Psyr_1350 -1.2 -3.8 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_3419 -1.2 -4.0 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3290 -1.2 -3.3 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_3581 -1.2 -4.9 ribosomal large subunit pseudouridine synthase B compare
Psyr_1930 -1.2 -2.7 hypothetical protein compare
Psyr_1935 -1.2 -3.5 Protein of unknown function DUF796 compare
Psyr_2641 -1.2 -2.6 hypothetical protein compare
Psyr_2808 -1.2 -2.2 hypothetical protein compare
Psyr_1751 -1.2 -3.6 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0529 -1.2 -4.6 Glycosyl transferase, group 1 compare
Psyr_1419 -1.2 -2.8 preQ(0) biosynthesis protein QueC compare
Psyr_2095 -1.2 -4.4 Conserved TM helix compare
Psyr_4609 -1.2 -7.2 anthranilate synthase, component I compare
Psyr_3728 -1.1 -4.1 hypothetical protein compare
Psyr_4089 -1.1 -4.4 PAS compare
Psyr_2927 -1.1 -1.8 transcriptional regulator, TetR family compare
Psyr_2990 -1.1 -3.2 conserved hypothetical protein compare
Psyr_4460 -1.1 -2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_0034 -1.1 -1.0 tryptophan synthase, beta chain compare
Psyr_1667 -1.1 -4.1 Colicin V production protein compare
Psyr_0941 -1.1 -5.3 Conserved hypothetical protein 92 compare
Psyr_2642 -1.1 -3.2 hypothetical protein compare
Psyr_3807 -1.0 -4.0 hypothetical protein compare
Psyr_0831 -1.0 -1.8 Two-component response regulator CbrB compare
Psyr_0487 -1.0 -2.1 glutathione synthase compare
Psyr_0549 -1.0 -2.1 Metallophosphoesterase compare
Psyr_1418 -1.0 -2.6 Radical SAM compare
Psyr_2200 -1.0 -2.1 UreE urease accessory, N-terminal compare
Psyr_1227 -1.0 -2.2 Queuosine biosynthesis protein compare
Psyr_0014 -1.0 -2.8 lipid A biosynthesis acyltransferase compare
Psyr_4051 -1.0 -2.5 transcriptional regulator, ArsR family compare
Psyr_1953 -1.0 -1.8 conserved hypothetical protein compare
Psyr_0579 -1.0 -6.9 RNAse R compare
Psyr_2538 -1.0 -1.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2855 -1.0 -2.3 methionine synthase (B12-independent) compare
Psyr_2664 -0.9 -4.7 hypothetical protein compare
Psyr_1885 -0.9 -2.0 hypothetical protein compare
Psyr_4860 -0.9 -1.4 Integrase, catalytic region compare
Psyr_2221 -0.9 -2.0 sarcosine oxidase, gamma subunit compare
Psyr_0524 -0.9 -2.7 Lipopolysaccharide kinase compare
Psyr_3179 -0.9 -1.9 DNA translocase FtsK compare
Psyr_1975 -0.9 -2.1 Integrase, catalytic region compare
Psyr_4519 -0.9 -4.8 General substrate transporter:Major facilitator superfamily compare
Psyr_1907 -0.9 -1.7 GTP cyclohydrolase I compare
Psyr_4989 -0.9 -2.5 hypothetical protein compare
Psyr_2594 -0.9 -0.9 unknown conserved protein in bacilli compare
Psyr_3450 -0.9 -3.5 Hpt compare
Psyr_2980 -0.9 -2.0 UDP-glucose pyrophosphorylase compare
Psyr_1250 -0.9 -2.4 conserved hypothetical protein compare
Psyr_4512 -0.9 -4.8 putative phage-related protein compare
Psyr_2847 -0.9 -2.1 hypothetical protein compare
Psyr_0215 -0.9 -5.7 Exodeoxyribonuclease III xth compare
Psyr_3127 -0.9 -1.7 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1749 -0.9 -4.2 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_3806 -0.8 -3.3 hypothetical protein compare
Psyr_1931 -0.8 -3.4 hypothetical protein compare
Psyr_4464 -0.8 -1.2 lipoprotein, putative compare
Psyr_3107 -0.8 -2.0 conserved hypothetical protein compare
Psyr_3677 -0.8 -2.0 Aminotransferase, class I and II compare
Psyr_4581 -0.8 -1.4 anthranilate synthase, component II compare
Psyr_2984 -0.8 -1.8 conserved hypothetical protein compare
Psyr_2848 -0.8 -2.8 hypothetical protein compare
Psyr_2348 -0.8 -1.7 hypothetical protein compare
Psyr_1455 -0.8 -2.9 conserved hypothetical protein compare
Psyr_1140 -0.8 -2.0 Disulfide bond formation protein DsbB compare
Psyr_4118 -0.8 -3.6 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0493 -0.8 -1.5 CheW-like protein compare
Psyr_4788 -0.8 -1.1 lipoprotein, putative compare
Psyr_2778 -0.8 -2.0 Phage minor tail protein L compare
Psyr_2060 -0.8 -3.0 Sec-independent protein translocase TatD compare
Psyr_1371 -0.8 -4.2 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_2065 -0.8 -2.8 transcription elongation factor GreB compare
Psyr_3808 -0.8 -1.2 hypothetical protein compare
Psyr_3954 -0.8 -2.7 GTP-binding protein LepA compare
Psyr_1404 -0.8 -4.6 Ferritin and Dps compare
Psyr_3199 -0.8 -2.0 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0372 -0.8 -1.3 CDS compare
Psyr_3164 -0.8 -5.0 Protein of unknown function UPF0005 compare
Psyr_0919 -0.8 -5.2 Chromosome segregation ATPase-like protein compare
Psyr_4155 -0.8 -1.1 Protein of unknown function DUF615 compare
Psyr_0827 -0.8 -3.2 pantothenate synthetase compare
Psyr_3287 -0.7 -1.4 DNA topoisomerase I compare
Psyr_2350 -0.7 -2.1 Protein of unknown function UPF0025 compare
Psyr_3193 -0.7 -1.6 Transcription factor jumonji, jmjC compare
Psyr_2824 -0.7 -2.7 conserved hypothetical protein compare
Psyr_1379 -0.7 -1.9 Regulatory protein RecX compare
Psyr_RNA61 -0.7 -1.5 tRNA-Gly compare
Psyr_3446 -0.7 -1.8 Surface presentation of antigens (SPOA) protein compare
Psyr_0535 -0.7 -1.7 toluene tolerance protein, putative compare
Psyr_3154 -0.7 -2.8 transcriptional regulator, TetR family compare
Psyr_3358 -0.7 -1.8 transmembrane pair compare
Psyr_2860 -0.7 -1.8 hypothetical protein compare
Psyr_2356 -0.7 -2.6 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_0201 -0.7 -4.4 ATP-dependent DNA helicase RecG compare
Psyr_0350 -0.7 -2.2 ABC transporter compare
Psyr_4019 -0.7 -2.5 H-NS family protein MvaT compare
Psyr_4087 -0.7 -1.0 Protein of unknown function DUF520 compare
Psyr_4408 -0.7 -3.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4476 -0.7 -2.7 dTDP-4-dehydrorhamnose reductase compare
Psyr_2535 -0.7 -2.1 GGDEF domain protein compare
Psyr_1193 -0.7 -1.8 type III helper protein HrpZ1 compare
Psyr_1190 -0.7 -3.0 type III transcriptional regulator HrpR compare
Psyr_5072 -0.7 -1.0 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4480 -0.7 -1.4 outer membrane transport energization protein TonB compare
Psyr_1410 -0.7 -2.2 Holliday junction DNA helicase RuvB compare
Psyr_0680 -0.7 -2.6 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_0081 -0.7 -1.4 ABC transporter compare
Psyr_3208 -0.7 -1.3 NADH dehydrogenase subunit M compare
Psyr_1489 -0.7 -2.6 hypothetical protein compare
Psyr_2739 -0.7 -1.9 ThiJ/PfpI compare
Psyr_2160 -0.7 -1.7 cold-shock DNA-binding protein family compare
Psyr_4978 -0.7 -1.2 hypothetical protein compare
Psyr_2112 -0.7 -1.3 Protein with unknown function DUF469 compare
Psyr_3896 -0.7 -1.1 BFD-like [2Fe-2S]-binding region compare
Psyr_0552 -0.7 -2.7 conserved hypothetical protein compare
Psyr_1688 -0.7 -1.4 Protein of unknown function DUF1315 compare
Psyr_1588 -0.7 -1.8 Putative exonuclease, RdgC compare
Psyr_1638 -0.7 -2.0 RNAse E compare
Psyr_1864 -0.7 -2.2 spermidine synthase compare
Psyr_3934 -0.6 -1.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_2770 -0.6 -3.5 tail fiber domain protein compare
Psyr_1008 -0.6 -1.8 conserved hypothetical protein compare
Psyr_5130 -0.6 -4.0 chromosome segregation ATPase compare
Psyr_1944 -0.6 -1.4 Thioesterase compare
Psyr_2872 -0.6 -0.9 hypothetical protein compare
Psyr_3088 -0.6 -2.2 Glycosyl transferase, group 1 compare
Psyr_0511 -0.6 -2.3 conserved hypothetical protein compare
Psyr_1069 -0.6 -2.5 molybdopterin synthase subunit MoaE compare
Psyr_2071 -0.6 -1.0 outer membrane lipoprotein OprI compare
Psyr_1779 -0.6 -1.9 hypothetical protein compare
Psyr_1097 -0.6 -1.5 glycine cleavage system H protein compare
Psyr_4801 -0.6 -2.2 Outer membrane efflux protein compare
Psyr_3005 -0.6 -1.1 3-oxoadipate enol-lactonase compare
Psyr_4566 -0.6 -4.0 Peptidase M23B compare
Psyr_0261 -0.6 -2.8 conserved hypothetical protein compare
Psyr_1934 -0.6 -2.6 conserved hypothetical protein compare
Psyr_0444 -0.6 -0.9 Malonate decarboxylase delta subunit compare
Psyr_0184 -0.6 -1.5 Protein of unknown function DUF484 compare
Psyr_4309 -0.6 -2.8 hypothetical protein compare
Psyr_5133 -0.6 -2.0 tRNA modification GTPase trmE compare
Psyr_3952 -0.6 -1.7 conserved hypothetical protein compare
Psyr_4112 -0.6 -3.7 Protein of unknown function UPF0011 compare
Psyr_2275 -0.6 -1.5 glutamate synthase (NADPH) GltB3 subunit compare
Psyr_0435 -0.6 -1.0 membrane protein, putative compare
Psyr_3675 -0.6 -1.3 adenosylcobinamide kinase compare
Psyr_3701 -0.6 -1.2 thioredoxin, putative compare
Psyr_0863 -0.6 -2.5 PhnA protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Cimicifugoside H1 across organisms