Experiment set11IT017 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM

200 most important genes:

  gene name fitness t score description  
BT2417 -3.7 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1641 -3.3 -2.2 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT3757 -3.3 -6.9 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT1857 -3.2 -5.4 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT1868 -3.1 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1377 -3.1 -2.1 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT2401 -3.0 -7.0 threonine synthase (NCBI ptt file) compare
BT1859 -3.0 -2.1 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3718 -3.0 -6.4 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT3933 -2.9 -6.7 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT0175 -2.9 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT3761 -2.8 -4.6 N-succinylglutamate synthase (from data) compare
BT1375 -2.8 -10.0 aspartokinase (NCBI ptt file) compare
BT2837 -2.7 -11.3 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT2402 -2.7 -10.3 phosphoglycerate mutase (NCBI ptt file) compare
BT3918 -2.7 -3.6 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT2003 -2.7 -1.7 putative membrane peptidase (NCBI ptt file) compare
BT3759 -2.6 -8.2 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT4028 -2.6 -0.9 hypothetical protein (NCBI ptt file) compare
BT0528 -2.6 -2.5 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT1379 -2.6 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT1979 -2.6 -2.5 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT4702 -2.6 -1.7 dihydroxynapthoic acid synthetase (NCBI ptt file) compare
BT2074 -2.5 -8.5 ketol-acid reductoisomerase (NCBI ptt file) compare
BT3395 -2.5 -8.3 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT0532 -2.5 -2.4 anthranilate synthase component I (NCBI ptt file) compare
BT2415 -2.5 -9.7 aspartate aminotransferase (NCBI ptt file) compare
BT3549 -2.4 -5.6 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT3936 -2.4 -1.6 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1374 -2.4 -1.7 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT2403 -2.4 -8.3 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT2078 -2.4 -8.6 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT0134 -2.4 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT4515 -2.4 -4.1 hypothetical protein (NCBI ptt file) compare
BT1858 -2.3 -4.7 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT3193 -2.3 -10.3 putative coenzyme A transferase (NCBI ptt file) compare
BT1843 -2.3 -5.2 adenylosuccinate synthetase (NCBI ptt file) compare
BT0530 -2.2 -2.2 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT1194 -2.2 -2.1 outer membrane protein, OmpA family (NCBI ptt file) compare
BT0427 -2.2 -2.1 xanthine phosphoribosyltransferase (NCBI ptt file) compare
BT0202 -2.2 -3.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT3184 -2.2 -10.0 L-aspartate oxidase (NCBI ptt file) compare
BT0887 -2.2 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT3361 -2.2 -5.1 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT4551 -2.1 -1.5 putative GTPase, ThdF family (NCBI ptt file) compare
BT0405 -2.1 -1.7 hypothetical protein (NCBI ptt file) compare
BT0203 -2.1 -1.5 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT0397 -2.1 -1.0 conserved hypothetical protein (NCBI ptt file) compare
BT1381 -2.1 -3.5 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT2853 -2.1 -1.4 hypothetical protein (NCBI ptt file) compare
BT3733 -2.1 -9.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT3758 -2.1 -2.8 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT2836 -2.1 -10.9 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT1607 -2.1 -2.8 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT1153 -2.1 -3.9 phosphoserine aminotransferase (NCBI ptt file) compare
BT3320 -2.1 -4.3 dihydrodipicolinate reductase (NCBI ptt file) compare
BT1983 -2.1 -7.3 hemolysin III (NCBI ptt file) compare
BT3164 -2.0 -7.5 quinolinate synthetase A (NCBI ptt file) compare
BT3394 -2.0 -9.0 putative arginine decarboxylase (NCBI ptt file) compare
BT0529 -2.0 -1.4 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT3717 -2.0 -1.4 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT0201 -2.0 -1.9 histidinol dehydrogenase (NCBI ptt file) compare
BT0019 -1.9 -3.1 hypothetical protein (NCBI ptt file) compare
BT2077 -1.9 -4.3 acetolactate synthase large subunit (NCBI ptt file) compare
BT3819 -1.9 -3.1 conserved hypothetical protein (NCBI ptt file) compare
BT0514 -1.9 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT2449 -1.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT3760 -1.9 -3.8 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT1860 -1.9 -3.3 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT1188 -1.9 -1.3 putative transcription regulator (NCBI ptt file) compare
BT4556 -1.8 -1.3 hypothetical protein (NCBI ptt file) compare
BT1316 -1.8 -1.3 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT1411 -1.8 -1.2 methylated-DNA--protein-cysteine methyltransferase (NCBI ptt file) compare
BT0799 -1.8 -2.1 hypothetical protein (NCBI ptt file) compare
BT2129 -1.8 -3.2 aspartate--ammonia ligase (NCBI ptt file) compare
BT1861 -1.8 -5.4 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT3035 -1.8 -7.7 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT0738 -1.8 -3.5 serine hydroxymethyltransferase (NCBI ptt file) compare
BT0533 -1.8 -1.2 tryptophan synthase beta chain (NCBI ptt file) compare
BT1844 -1.8 -2.9 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT0731 -1.7 -1.6 hypothetical protein (NCBI ptt file) compare
BT1203 -1.7 -2.2 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT2076 -1.7 -5.8 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT0527 -1.7 -2.0 tryptophan synthase alpha chain (NCBI ptt file) compare
BT3935 -1.7 -1.1 aminotransferase (NCBI ptt file) compare
BT3805 -1.7 -2.5 two-component system sensor histidine kinase (NCBI ptt file) compare
BT1152 -1.7 -2.0 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT0700 -1.7 -3.1 GTP pyrophosphokinase (NCBI ptt file) compare
BT1476 -1.6 -2.4 aspartate aminotransferase (NCBI ptt file) compare
BT2742 -1.6 -0.7 integrase, site-specific recombinase (NCBI ptt file) compare
BT3980 -1.6 -1.1 hypothetical protein (NCBI ptt file) compare
BT3968 -1.6 -2.7 cation efflux system protein (NCBI ptt file) compare
BT0985 -1.6 -1.5 putative sialic acid-specific acetylesterase II (NCBI ptt file) compare
BT2080 -1.6 -2.6 L-cysteine desulfidase cdsB (from data) compare
BT0545 -1.6 -1.1 nitrogen regulatory protein P-II (NCBI ptt file) compare
BT1466 -1.6 -2.1 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0596 -1.6 -1.0 putative transcriptional regulator (NCBI ptt file) compare
BT1137 -1.5 -1.2 hypothetical protein (NCBI ptt file) compare
BT1565 -1.5 -1.6 hypothetical protein (NCBI ptt file) compare
BT4406 -1.5 -3.6 hypothetical protein (NCBI ptt file) compare
BT4002 -1.5 -1.0 ATPase, ParA family (NCBI ptt file) compare
BT1385 -1.5 -1.5 transcriptional regulator (NCBI ptt file) compare
BT4765 -1.5 -3.1 conserved hypothetical protein (NCBI ptt file) compare
BT3762 -1.5 -2.8 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT0923 -1.5 -1.0 putative periplasmic protein (NCBI ptt file) compare
BT4255 -1.5 -2.0 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT1117 -1.5 -1.4 conserved hypothetical protein, with a cAMP-binding domain (NCBI ptt file) compare
BT3719 -1.5 -2.8 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT1256 -1.5 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT2418 -1.5 -2.5 hypothetical protein (NCBI ptt file) compare
BT0193 -1.5 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1378 -1.4 -1.9 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT0400 -1.4 -1.0 putative tyrosine-protein kinase in capsular polysaccharide biosynthesis region (NCBI ptt file) compare
BT1680 -1.4 -2.1 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT2684 -1.4 -1.5 hypothetical protein (NCBI ptt file) compare
BT1363 -1.4 -1.0 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT0531 -1.4 -1.3 anthranilate synthase component II (NCBI ptt file) compare
BT1270 -1.4 -3.2 putative Na+/H+ antiporter (NCBI ptt file) compare
BT0279 -1.4 -2.1 hypothetical protein (NCBI ptt file) compare
BT4753 -1.4 -1.1 hypothetical protein (NCBI ptt file) compare
BT3904 -1.4 -4.6 conserved hypothetical protein (NCBI ptt file) compare
BT4421 -1.4 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT1098 -1.4 -1.9 methylglyoxal synthase (NCBI ptt file) compare
BT1588 -1.4 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT1970 -1.4 -5.1 glutamate dehydrogenase (NCBI ptt file) compare
BT2173 -1.4 -3.7 hypothetical protein (NCBI ptt file) compare
BT0896 -1.4 -1.3 putative patatin-like phospholipase (NCBI ptt file) compare
BT0880 -1.4 -1.3 hypothetical protein (NCBI ptt file) compare
BT3253 -1.4 -2.0 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT1258 -1.3 -1.5 putative acetyltransferase (NCBI ptt file) compare
BT0616 -1.3 -0.9 conserved hypothetical protein (NCBI ptt file) compare
BT0160 -1.3 -2.5 hypothetical protein (NCBI ptt file) compare
BT0869 -1.3 -0.9 hypothetical protein (NCBI ptt file) compare
BT1179 -1.3 -2.1 glycosyltransferase, family 8 (NCBI ptt file) compare
BT0617 -1.3 -0.9 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) compare
BT4698 -1.3 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1206 -1.3 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT4478 -1.3 -2.3 hypothetical protein (NCBI ptt file) compare
BT3375 -1.3 -4.5 aspartate aminotransferase (NCBI ptt file) compare
BT2321 -1.3 -1.5 putative integrase (NCBI ptt file) compare
BT4524 -1.3 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT2546 -1.3 -4.8 transcriptional regulator (NCBI ptt file) compare
BT0091 -1.3 -2.7 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT0084 -1.2 -1.8 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2042 -1.2 -1.3 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT0200 -1.2 -1.7 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT1981 -1.2 -2.5 hypothetical protein (NCBI ptt file) compare
BT4393 -1.2 -2.7 hypothetical protein (NCBI ptt file) compare
BT0032 -1.2 -3.0 hypothetical protein (NCBI ptt file) compare
BT0505 -1.2 -2.9 conserved hypothetical protein (NCBI ptt file) compare
BT0067 -1.2 -1.1 hypothetical protein (NCBI ptt file) compare
BT3373 -1.2 -2.6 spermidine n1-acetyltransferase (NCBI ptt file) compare
BT0876 -1.2 -0.8 conserved hypothetical protein (NCBI ptt file) compare
BT0519 -1.2 -3.3 hypothetical protein (NCBI ptt file) compare
BT4699 -1.2 -2.2 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT1340 -1.2 -2.4 putative lipopolysaccharide biosynthesis glycosyltransferase (NCBI ptt file) compare
BT1211 -1.2 -1.1 hypothetical protein (NCBI ptt file) compare
BT1230 -1.2 -1.5 hypothetical protein (NCBI ptt file) compare
BT0098 -1.2 -1.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2155 -1.1 -3.1 hypothetical protein (NCBI ptt file) compare
BT0954 -1.1 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT4644 -1.1 -2.1 putative anti-sigma factor (NCBI ptt file) compare
BT0087 -1.1 -1.6 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4386 -1.1 -1.1 hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file) compare
BT0848 -1.1 -1.0 hypothetical protein (NCBI ptt file) compare
BT1608 -1.1 -3.1 capsule biosynthesis protein capA (NCBI ptt file) compare
BT1894 -1.1 -4.2 TPR-repeat-containing proteins (NCBI ptt file) compare
BT4211 -1.1 -1.3 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT1145 -1.1 -1.2 glucose-inhibited division protein (NCBI ptt file) compare
BT4258 -1.1 -4.0 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT1141 -1.1 -2.6 cation efflux family protein (NCBI ptt file) compare
BT4158 -1.1 -2.6 hypothetical protein (NCBI ptt file) compare
BT3405 -1.1 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1343 -1.1 -2.8 putative capsule biosynthesis protein (NCBI ptt file) compare
BT1173 -1.1 -1.8 hypothetical protein (NCBI ptt file) compare
BT4454 -1.1 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT3342 -1.1 -1.8 hypothetical protein (NCBI ptt file) compare
BT1380 -1.1 -1.0 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT4234 -1.1 -2.5 hypothetical protein (NCBI ptt file) compare
BT4756 -1.1 -3.2 hypothetical protein (NCBI ptt file) compare
BT2843 -1.1 -2.4 integrase (NCBI ptt file) compare
BT2691 -1.1 -1.9 methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT0395 -1.1 -1.8 hypothetical protein (NCBI ptt file) compare
BT2169 -1.1 -1.7 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3075 -1.1 -5.7 NAD-dependent epimerase/dehydratase family protein (NCBI ptt file) compare
BT1817 -1.0 -1.9 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3224 -1.0 -2.4 putative lysine decarboxylase (NCBI ptt file) compare
BT0322 -1.0 -1.5 putative oxidoreductase (NCBI ptt file) compare
BT0661 -1.0 -2.4 hypothetical protein (NCBI ptt file) compare
BT2170 -1.0 -2.9 hypothetical protein (NCBI ptt file) compare
BT2468 -1.0 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT4271 -1.0 -1.3 hypothetical protein (NCBI ptt file) compare
BT0851 -1.0 -1.8 hypothetical protein (NCBI ptt file) compare
BT0524 -1.0 -2.6 putative two-component system response regulator (NCBI ptt file) compare
BT0772 -1.0 -2.3 hypothetical protein (NCBI ptt file) compare
BT2646 -1.0 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1250 -1.0 -2.1 conserved hypothetical protein, putative outer membrane efflux protein (NCBI ptt file) compare
BT2184 -1.0 -2.2 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2875 -1.0 -3.5 serine O-acetyltransferase (NCBI ptt file) compare
BT0606 -1.0 -1.9 hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in stress experiments

For stress Rifampicin across organisms