Experiment set11IT016 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Leucodin 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.0 -3.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0383 -4.5 -3.1 Twin-arginine translocation protein TatB compare
Psyr_4340 -3.8 -8.4 phosphomethylpyrimidine kinase, putative compare
Psyr_1544 -3.5 -4.8 SirA-like protein compare
Psyr_1556 -3.5 -3.3 hypothetical protein compare
Psyr_3008 -3.2 -9.4 Undecaprenyl-diphosphatase compare
Psyr_1613 -3.2 -4.8 septum site-determining protein MinC compare
Psyr_4740 -3.2 -6.3 thiazole-phosphate synthase compare
Psyr_4091 -3.0 -6.9 8-oxo-dGTPase compare
Psyr_4203 -3.0 -2.9 SsrA-binding protein compare
Psyr_4687 -3.0 -7.4 biotin synthase compare
Psyr_4686 -2.9 -6.4 8-amino-7-oxononanoate synthase compare
Psyr_0849 -2.7 -9.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4341 -2.6 -6.7 thiamine-phosphate diphosphorylase compare
Psyr_1663 -2.6 -3.8 phosphoribosylanthranilate isomerase compare
Psyr_0454 -2.4 -5.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4580 -2.4 -3.1 anthranilate phosphoribosyltransferase compare
Psyr_4884 -2.2 -6.6 Rhodanese-like protein compare
Psyr_0826 -2.2 -7.8 glucose-6-phosphate isomerase compare
Psyr_4115 -2.1 -2.8 phosphoheptose isomerase compare
Psyr_4684 -2.1 -3.4 biotin synthesis protein BioC compare
Psyr_3954 -2.1 -6.7 GTP-binding protein LepA compare
Psyr_1688 -2.0 -3.7 Protein of unknown function DUF1315 compare
Psyr_0918 -2.0 -11.5 ABC transporter compare
Psyr_0917 -1.9 -10.0 ABC-2 compare
Psyr_4683 -1.8 -4.4 dethiobiotin synthase compare
Psyr_1930 -1.8 -4.2 hypothetical protein compare
Psyr_4581 -1.7 -3.5 anthranilate synthase, component II compare
Psyr_1373 -1.7 -3.1 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4627 -1.7 -2.2 dimethyladenosine transferase compare
Psyr_0475 -1.7 -2.4 Protein of unknown function YGGT compare
Psyr_0575 -1.7 -3.6 protease FtsH subunit HflC compare
Psyr_2980 -1.6 -3.3 UDP-glucose pyrophosphorylase compare
Psyr_0574 -1.6 -4.9 protease FtsH subunit HflK compare
Psyr_5132 -1.6 -2.8 Glucose-inhibited division protein A subfamily compare
Psyr_1748 -1.6 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0487 -1.6 -2.6 glutathione synthase compare
Psyr_1907 -1.5 -3.1 GTP cyclohydrolase I compare
Psyr_1555 -1.5 -3.4 Cobyrinic acid a,c-diamide synthase compare
Psyr_3287 -1.5 -2.2 DNA topoisomerase I compare
Psyr_3293 -1.5 -2.9 UspA compare
Psyr_4822 -1.5 -3.0 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_1588 -1.4 -3.5 Putative exonuclease, RdgC compare
Psyr_0565 -1.4 -5.4 Protein of unknown function UPF0126 compare
Psyr_0259 -1.4 -3.5 Osmolarity sensor protein envZ compare
Psyr_4089 -1.4 -5.1 PAS compare
Psyr_2471 -1.4 -2.6 hydroxymethylglutaryl-CoA lyase compare
Psyr_3554 -1.3 -1.8 Carbon storage regulator compare
Psyr_3084 -1.3 -2.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0435 -1.3 -2.1 membrane protein, putative compare
Psyr_2847 -1.3 -2.4 hypothetical protein compare
Psyr_3198 -1.3 -2.4 NADH dehydrogenase subunit B compare
Psyr_0179 -1.3 -2.9 Protein of unknown function DUF1289 compare
Psyr_4991 -1.3 -2.4 hypothetical protein compare
Psyr_0493 -1.3 -2.1 CheW-like protein compare
Psyr_1667 -1.3 -5.3 Colicin V production protein compare
Psyr_5133 -1.2 -3.3 tRNA modification GTPase trmE compare
Psyr_4362 -1.2 -1.9 Rare lipoprotein A compare
Psyr_2347 -1.2 -1.1 hypothetical protein compare
Psyr_4754 -1.2 -1.5 16S rRNA m(2)G-966 methyltransferase compare
Psyr_3806 -1.2 -4.4 hypothetical protein compare
Psyr_1791 -1.1 -2.2 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_2642 -1.1 -4.1 hypothetical protein compare
Psyr_1097 -1.1 -2.5 glycine cleavage system H protein compare
Psyr_3728 -1.1 -4.8 hypothetical protein compare
Psyr_3808 -1.1 -1.8 hypothetical protein compare
Psyr_1350 -1.1 -2.6 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0724 -1.1 -1.5 conserved hypothetical protein compare
Psyr_2854 -1.1 -3.4 conserved hypothetical protein compare
Psyr_3620 -1.1 -1.9 hypothetical protein compare
Psyr_3258 -1.1 -2.9 conserved hypothetical protein compare
Psyr_1832 -1.1 -2.1 Exonuclease compare
Psyr_2769 -1.0 -3.0 conserved hypothetical protein compare
Psyr_0622 -1.0 -2.2 transcriptional regulator, XRE family compare
Psyr_0281 -1.0 -2.7 ABC transporter compare
Psyr_1935 -1.0 -3.7 Protein of unknown function DUF796 compare
Psyr_0034 -1.0 -1.0 tryptophan synthase, beta chain compare
Psyr_2807 -1.0 -1.8 NinB compare
Psyr_0571 -1.0 -2.4 tRNA isopentenyltransferase compare
Psyr_3581 -1.0 -3.8 ribosomal large subunit pseudouridine synthase B compare
Psyr_2071 -1.0 -1.6 outer membrane lipoprotein OprI compare
Psyr_1747 -1.0 -2.6 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2346 -1.0 -3.4 conserved hypothetical protein compare
Psyr_1419 -1.0 -2.3 preQ(0) biosynthesis protein QueC compare
Psyr_4634 -1.0 -1.0 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3896 -1.0 -1.9 BFD-like [2Fe-2S]-binding region compare
Psyr_3013 -0.9 -1.7 magnesium chelatase subunit ChlD compare
Psyr_4460 -0.9 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_1460 -0.9 -2.9 hypothetical protein compare
Psyr_4350 -0.9 -2.5 Protein of unknown function DUF218 compare
Psyr_2668 -0.9 -2.4 Helix-turn-helix, Fis-type compare
Psyr_2607 -0.9 -4.2 regulatory protein, LuxR compare
Psyr_2617 -0.9 -1.9 Secretion protein HlyD compare
Psyr_0215 -0.9 -5.4 Exodeoxyribonuclease III xth compare
Psyr_3120 -0.9 -2.4 D-glucarate dehydratase compare
Psyr_1919 -0.9 -3.8 hypothetical protein compare
Psyr_1719 -0.8 -1.5 conserved hypothetical protein compare
Psyr_3807 -0.8 -3.7 hypothetical protein compare
Psyr_1268 -0.8 -4.2 extracellular solute-binding protein, family 3:SLT compare
Psyr_4254 -0.8 -1.3 conserved hypothetical protein compare
Psyr_2255 -0.8 -2.1 ABC transporter compare
Psyr_2641 -0.8 -2.2 hypothetical protein compare
Psyr_0535 -0.8 -2.4 toluene tolerance protein, putative compare
Psyr_1269 -0.8 -2.6 phosphoribosylformylglycinamidine synthase compare
Psyr_0549 -0.8 -1.8 Metallophosphoesterase compare
Psyr_1417 -0.8 -3.2 TPR repeat protein compare
Psyr_2906 -0.8 -1.2 Pilus retraction protein PilT compare
Psyr_1984 -0.8 -2.4 3-isopropylmalate dehydratase, small subunit compare
Psyr_3290 -0.8 -1.9 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_2779 -0.8 -1.9 Phage minor tail compare
Psyr_2592 -0.8 -3.5 transport system permease protein compare
Psyr_1404 -0.8 -4.2 Ferritin and Dps compare
Psyr_4609 -0.8 -5.9 anthranilate synthase, component I compare
Psyr_4566 -0.8 -5.0 Peptidase M23B compare
Psyr_2383 -0.8 -1.7 Protein of unknown function DUF72 compare
Psyr_0680 -0.8 -2.8 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_2899 -0.8 -3.3 conserved hypothetical protein compare
Psyr_2990 -0.8 -2.1 conserved hypothetical protein compare
Psyr_2664 -0.8 -3.9 hypothetical protein compare
Psyr_0920 -0.8 -6.6 Glycosyl transferase, group 1 compare
Psyr_3427 -0.8 -1.2 conserved hypothetical protein compare
Psyr_2894 -0.8 -1.1 conserved hypothetical protein compare
Psyr_1245 -0.8 -3.9 23S rRNA m(2)A-2503 methyltransferase compare
Psyr_4490 -0.8 -1.5 transcriptional regulator, DeoR family compare
Psyr_1553 -0.8 -3.4 hypothetical protein compare
Psyr_0282 -0.8 -2.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_5130 -0.8 -4.6 chromosome segregation ATPase compare
Psyr_1783 -0.8 -1.2 CDS compare
Psyr_2848 -0.8 -2.1 hypothetical protein compare
Psyr_0579 -0.8 -5.5 RNAse R compare
Psyr_3739 -0.8 -2.0 conserved hypothetical protein compare
Psyr_3127 -0.8 -2.6 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1379 -0.8 -1.8 Regulatory protein RecX compare
Psyr_4480 -0.8 -1.5 outer membrane transport energization protein TonB compare
Psyr_1749 -0.7 -3.9 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_0550 -0.7 -3.0 Protein of unknown function UPF0227 compare
Psyr_2348 -0.7 -1.6 hypothetical protein compare
Psyr_1931 -0.7 -2.4 hypothetical protein compare
Psyr_1372 -0.7 -2.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_0184 -0.7 -2.2 Protein of unknown function DUF484 compare
Psyr_0919 -0.7 -4.9 Chromosome segregation ATPase-like protein compare
Psyr_3199 -0.7 -1.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3213 -0.7 -2.0 Propeptide, PepSY amd peptidase M4 compare
Psyr_2771 -0.7 -3.7 conserved domain protein compare
Psyr_0394 -0.7 -3.0 Heat shock protein HslU compare
Psyr_0350 -0.7 -2.0 ABC transporter compare
Psyr_1408 -0.7 -1.9 Holliday junction endonuclease RuvC compare
Psyr_4519 -0.7 -3.7 General substrate transporter:Major facilitator superfamily compare
Psyr_4093 -0.7 -2.7 glutamate N-acetyltransferase compare
Psyr_4136 -0.7 -1.5 BolA-like protein compare
Psyr_0268 -0.7 -1.8 DSBA oxidoreductase compare
Psyr_2117 -0.7 -1.4 conserved hypothetical protein compare
Psyr_5065 -0.7 -3.9 ATP-dependent DNA helicase UvrD compare
Psyr_4118 -0.7 -2.9 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1190 -0.7 -2.5 type III transcriptional regulator HrpR compare
Psyr_3637 -0.7 -5.3 Glycosyl transferase, family 4 compare
Psyr_4830 -0.7 -1.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2787 -0.7 -1.3 hypothetical protein compare
Psyr_0186 -0.7 -3.4 HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 compare
Psyr_4194 -0.7 -2.3 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_2520 -0.7 -1.4 SOS-response transcriptional repressor, LexA compare
Psyr_2973 -0.7 -1.3 Glyoxalase I compare
Psyr_3862 -0.7 -2.0 conserved hypothetical protein compare
Psyr_3174 -0.7 -2.7 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_4622 -0.7 -2.4 Nucleotidyl transferase compare
Psyr_2265 -0.7 -2.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1872 -0.7 -1.8 conserved hypothetical protein compare
Psyr_4658 -0.7 -1.4 CDS compare
Psyr_1009 -0.7 -1.9 Peptidylprolyl isomerase, FKBP-type compare
Psyr_3005 -0.7 -0.7 3-oxoadipate enol-lactonase compare
Psyr_2770 -0.7 -2.7 tail fiber domain protein compare
Psyr_2405 -0.7 -3.1 transcriptional regulator, GntR family compare
Psyr_RNA61 -0.7 -1.8 tRNA-Gly compare
Psyr_2855 -0.7 -1.6 methionine synthase (B12-independent) compare
Psyr_0529 -0.6 -2.3 Glycosyl transferase, group 1 compare
Psyr_2633 -0.6 -3.3 conserved hypothetical protein compare
Psyr_1968 -0.6 -1.7 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0923 -0.6 -2.7 hypothetical protein compare
Psyr_1751 -0.6 -2.3 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4454 -0.6 -1.9 HupE/UreJ protein compare
Psyr_5129 -0.6 -1.9 chromosome segregation DNA-binding protein compare
Psyr_5029 -0.6 -1.5 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_0376 -0.6 -1.9 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_1975 -0.6 -1.5 Integrase, catalytic region compare
Psyr_0033 -0.6 -0.7 tryptophan synthase, alpha chain compare
Psyr_4584 -0.6 -3.7 Protein of unknown function DUF144 compare
Psyr_2874 -0.6 -2.4 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_3476 -0.6 -1.6 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_4933 -0.6 -3.4 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_4386 -0.6 -1.5 conserved hypothetical protein compare
Psyr_3714 -0.6 -3.4 Ferric iron reductase compare
Psyr_4786 -0.6 -1.0 hypothetical protein compare
Psyr_0294 -0.6 -2.6 Exopolyphosphatase compare
Psyr_3658 -0.6 -3.9 Rhodanese-like protein compare
Psyr_2462 -0.6 -1.7 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_2842 -0.6 -3.2 hypothetical protein compare
Psyr_3107 -0.6 -1.8 conserved hypothetical protein compare
Psyr_2601 -0.6 -3.3 regulatory protein, LuxR compare
Psyr_2088 -0.6 -1.0 2-methylaconitate cis-trans isomerase compare
Psyr_4112 -0.6 -3.8 Protein of unknown function UPF0011 compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Leucodin across organisms