Experiment set11IT016 for Pseudomonas fluorescens SBW25-INTG

Compare to:

p-Coumaric acid (C) and Ammonium chloride (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS05655 -6.5 -2.6 DeoR/GlpR family transcriptional regulator compare
PFLU_RS18410 -6.2 -3.1 response regulator compare
PFLU_RS15380 -6.0 -3.1 DUF1652 domain-containing protein compare
PFLU_RS06765 -6.0 -3.4 4-carboxymuconolactone decarboxylase compare
PFLU_RS29095 -5.8 -20.3 polyphosphate kinase 1 compare
PFLU_RS20575 -5.7 -3.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS19015 -5.6 -7.7 anti-sigma factor compare
PFLU_RS20715 -5.3 -1.8 iron ABC transporter permease compare
PFLU_RS28645 -5.3 -10.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS16420 -5.3 -5.2 4-alpha-glucanotransferase compare
PFLU_RS16410 -5.3 -12.9 glycogen synthase GlgA compare
PFLU_RS16435 -5.3 -5.1 glycogen debranching protein GlgX compare
PFLU_RS21240 -5.2 -1.5 hypothetical protein compare
PFLU_RS13475 -5.2 -8.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS16415 -5.2 -9.9 malto-oligosyltrehalose trehalohydrolase compare
PFLU_RS10765 -5.1 -9.3 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS14550 -5.1 -5.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS23265 -5.1 -6.8 aspartate kinase compare
PFLU_RS13485 -5.1 -7.0 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS28535 -5.1 -9.7 dihydroxy-acid dehydratase compare
PFLU_RS16425 -5.0 -10.2 malto-oligosyltrehalose synthase compare
PFLU_RS19580 -5.0 -2.6 helix-turn-helix transcriptional regulator compare
PFLU_RS21530 -5.0 -18.8 transporter substrate-binding domain-containing protein compare
PFLU_RS18055 -5.0 -1.4 hydrolase compare
PFLU_RS20510 -4.9 -8.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28390 -4.9 -7.5 methionine biosynthesis protein MetW compare
PFLU_RS28385 -4.9 -10.0 homoserine O-acetyltransferase compare
PFLU_RS21260 -4.9 -5.8 DUF3509 domain-containing protein compare
PFLU_RS27365 -4.9 -6.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS06755 -4.9 -7.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS11850 -4.9 -1.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS20580 -4.9 -8.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS07640 -4.9 -4.8 universal stress protein compare
PFLU_RS25640 -4.8 -6.6 ketol-acid reductoisomerase compare
PFLU_RS04835 -4.8 -0.8 hypothetical protein compare
PFLU_RS06730 -4.8 -10.3 CoA-transferase subunit beta compare
PFLU_RS27370 -4.8 -6.6 anthranilate phosphoribosyltransferase compare
PFLU_RS16080 -4.8 -7.3 p-hydroxycinnamoyl CoA hydratase/lyase compare
PFLU_RS05050 -4.8 -1.9 response regulator transcription factor compare
PFLU_RS16075 -4.8 -4.4 aldehyde dehydrogenase compare
PFLU_RS20565 -4.8 -11.1 3-isopropylmalate dehydrogenase compare
PFLU_RS04465 -4.7 -6.5 ATP phosphoribosyltransferase compare
PFLU_RS06725 -4.7 -7.2 CoA transferase subunit A compare
PFLU_RS01605 -4.7 -5.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS04385 -4.7 -8.5 RNase adapter RapZ compare
PFLU_RS03755 -4.7 -7.8 PDZ domain-containing protein compare
PFLU_RS06430 -4.7 -7.8 RNA polymerase sigma factor RpoS compare
PFLU_RS21300 -4.6 -4.5 cysteine hydrolase compare
PFLU_RS20290 -4.6 -1.3 integration host factor subunit alpha compare
PFLU_RS20540 -4.6 -8.2 phosphoribosylanthranilate isomerase compare
PFLU_RS00440 -4.5 -10.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS30555 -4.5 -1.5 hypothetical protein compare
PFLU_RS25760 -4.5 -6.2 glucose-6-phosphate isomerase compare
PFLU_RS24025 -4.5 -9.6 quinolinate synthase NadA compare
PFLU_RS02490 -4.5 -8.1 phosphoserine phosphatase SerB compare
PFLU_RS04150 -4.5 -6.8 DUF1043 family protein compare
PFLU_RS21200 -4.5 -11.2 N-acetylglutaminylglutamine amidotransferase compare
PFLU_RS03970 -4.4 -10.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS04470 -4.4 -8.0 histidinol dehydrogenase compare
PFLU_RS16070 -4.4 -9.4 feruloyl-CoA synthase compare
PFLU_RS04315 -4.4 -2.3 rod shape-determining protein MreD compare
PFLU_RS01620 -4.4 -5.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS24325 -4.4 -14.5 glucokinase compare
PFLU_RS23380 -4.4 -1.9 HAD-IB family hydrolase compare
PFLU_RS02590 -4.3 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS07430 -4.3 -12.8 helix-turn-helix domain-containing protein compare
PFLU_RS25360 -4.3 -3.0 glutamate 5-kinase compare
PFLU_RS05910 -4.3 -1.4 response regulator transcription factor compare
PFLU_RS29480 -4.3 -7.7 exodeoxyribonuclease III compare
PFLU_RS00040 -4.2 -19.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS17545 -4.2 -1.0 DUF465 domain-containing protein compare
PFLU_RS26535 -4.2 -8.3 thiamine phosphate synthase compare
PFLU_RS06735 -4.2 -7.0 3-oxoadipyl-CoA thiolase compare
PFLU_RS22375 -4.2 -2.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS27340 -4.2 -10.8 histidine triad nucleotide-binding protein compare
PFLU_RS24765 -4.2 -22.5 2-isopropylmalate synthase compare
PFLU_RS03240 -4.2 -15.2 copper-translocating P-type ATPase compare
PFLU_RS07250 -4.2 -14.9 M48 family metallopeptidase compare
PFLU_RS18655 -4.1 -2.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS02790 -4.1 -1.2 TetR family transcriptional regulator compare
PFLU_RS25800 -4.1 -4.0 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS29290 -4.1 -2.8 hypothetical protein compare
PFLU_RS30520 -4.1 -6.9 ketoacyl-ACP synthase III compare
PFLU_RS01900 -4.1 -7.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS22835 -4.1 -8.8 amidotransferase compare
PFLU_RS09500 -4.1 -1.0 hypothetical protein compare
PFLU_RS05965 -4.1 -1.0 hypothetical protein compare
PFLU_RS25750 -4.1 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS28165 -4.1 -8.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS06760 -4.1 -11.4 3-oxoadipate enol-lactonase compare
PFLU_RS07230 -4.1 -5.6 RNA polymerase sigma factor RpoE compare
PFLU_RS00180 -4.0 -4.8 tryptophan synthase subunit beta compare
PFLU_RS00175 -4.0 -3.9 tryptophan synthase subunit alpha compare
PFLU_RS01895 -4.0 -6.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01645 -4.0 -8.6 S41 family peptidase compare
PFLU_RS21205 -4.0 -12.9 N-acetylglutaminylglutamine synthetase compare
PFLU_RS18915 -4.0 -12.7 translocation/assembly module TamB compare
PFLU_RS07690 -4.0 -7.2 helix-turn-helix transcriptional regulator compare
PFLU_RS09535 -4.0 -0.9 TIGR03750 family conjugal transfer protein compare
PFLU_RS01960 -4.0 -1.7 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS06310 -4.0 -5.4 sigma E protease regulator RseP compare
PFLU_RS17615 -4.0 -1.6 DeoR/GlpR transcriptional regulator compare
PFLU_RS01005 -3.9 -0.9 ABC transporter ATP-binding protein compare
PFLU_RS23325 -3.9 -11.0 GlxA family transcriptional regulator compare
PFLU_RS28965 -3.9 -10.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS00535 -3.9 -1.6 DUF1127 domain-containing protein compare
PFLU_RS25645 -3.9 -1.8 acetolactate synthase small subunit compare
PFLU_RS22380 -3.9 -2.7 sulfite exporter TauE/SafE family protein compare
PFLU_RS08125 -3.8 -2.7 integration host factor subunit beta compare
PFLU_RS29990 -3.8 -6.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS11930 -3.8 -2.0 biopolymer transporter ExbD compare
PFLU_RS14730 -3.8 -7.0 response regulator compare
PFLU_RS01965 -3.8 -1.5 ATP-dependent protease subunit HslV compare
PFLU_RS25670 -3.8 -17.3 bifunctional aminoglycoside phosphotransferase/ATP-binding protein compare
PFLU_RS25225 -3.8 -5.2 disulfide bond formation protein B compare
PFLU_RS04200 -3.8 -4.5 cytochrome bc complex cytochrome b subunit compare
PFLU_RS07245 -3.8 -8.4 DegQ family serine endoprotease compare
PFLU_RS26735 -3.8 -3.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS24785 -3.8 -12.2 outer membrane protein assembly factor BamB compare
PFLU_RS02280 -3.8 -17.0 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS30390 -3.8 -2.7 type III secretion system rspB compare
PFLU_RS08155 -3.8 -3.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS07435 -3.7 -13.8 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS22095 -3.7 -21.6 GTP diphosphokinase compare
PFLU_RS04205 -3.7 -5.7 cytochrome c1 compare
PFLU_RS28420 -3.7 -9.4 thiazole synthase compare
PFLU_RS18940 -3.7 -10.9 acyl-CoA dehydrogenase compare
PFLU_RS26570 -3.7 -7.1 HlyC/CorC family transporter compare
PFLU_RS05630 -3.7 -1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS13065 -3.7 -7.7 ser/threonine protein phosphatase compare
PFLU_RS22370 -3.7 -5.1 cadmium-translocating P-type ATPase compare
PFLU_RS21495 -3.7 -3.5 TlpA family protein disulfide reductase compare
PFLU_RS24015 -3.7 -1.9 cold-shock protein compare
PFLU_RS12025 -3.6 -5.0 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS27485 -3.6 -20.2 PrkA family serine protein kinase compare
PFLU_RS06800 -3.6 -8.1 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS27465 -3.6 -2.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS27910 -3.6 -0.8 helix-turn-helix transcriptional regulator compare
PFLU_RS04195 -3.6 -2.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS06130 -3.6 -11.9 phosphoenolpyruvate carboxylase compare
PFLU_RS04220 -3.6 -6.9 FadR family transcriptional regulator compare
PFLU_RS14775 -3.6 -1.4 enoyl-CoA hydratase compare
PFLU_RS21215 -3.6 -1.2 YheU family protein compare
PFLU_RS31440 -3.5 -1.2 hypothetical protein compare
PFLU_RS18665 -3.5 -4.2 NADH-quinone oxidoreductase subunit L compare
PFLU_RS02690 -3.5 -1.4 hypothetical protein compare
PFLU_RS25715 -3.5 -2.4 RNA polymerase-binding protein DksA compare
PFLU_RS18610 -3.5 -15.5 isocitrate lyase compare
PFLU_RS07910 -3.5 -1.4 type 1 fimbrial protein compare
PFLU_RS06805 -3.5 -19.9 efflux RND transporter permease subunit compare
PFLU_RS00445 -3.5 -1.1 hypothetical protein compare
PFLU_RS06810 -3.4 -8.5 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS15280 -3.4 -5.4 hypothetical protein compare
PFLU_RS08445 -3.4 -7.9 MarR family transcriptional regulator compare
PFLU_RS18640 -3.4 -4.6 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS19935 -3.4 -1.6 type II secretion system protein GspF compare
PFLU_RS07540 -3.4 -1.9 class II glutamine amidotransferase compare
PFLU_RS06740 -3.4 -10.6 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS06745 -3.4 -5.1 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS18505 -3.3 -9.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24710 -3.3 -11.8 alpha,alpha-phosphotrehalase compare
PFLU_RS08165 -3.3 -1.9 acyl carrier protein compare
PFLU_RS01390 -3.3 -8.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS08505 -3.3 -2.3 protease HtpX compare
PFLU_RS10430 -3.3 -2.9 peptidase compare
PFLU_RS19665 -3.3 -1.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS26635 -3.3 -3.2 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS14430 -3.3 -1.4 arsenate reductase ArsC compare
PFLU_RS25735 -3.3 -3.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25730 -3.3 -12.8 PAS domain S-box protein compare
PFLU_RS30900 -3.3 -1.4 hypothetical protein compare
PFLU_RS18920 -3.2 -12.2 outer membrane protein assembly factor compare
PFLU_RS18635 -3.2 -3.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS23920 -3.2 -1.9 septation protein A compare
PFLU_RS12975 -3.2 -4.5 DUF934 domain-containing protein compare
PFLU_RS15410 -3.2 -2.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS24205 -3.2 -1.5 DNA binding protein compare
PFLU_RS22630 -3.2 -17.0 phosphoenolpyruvate synthase compare
PFLU_RS03645 -3.2 -10.7 tetratricopeptide repeat protein compare
PFLU_RS23590 -3.2 -1.7 gluconokinase compare
PFLU_RS04930 -3.2 -11.1 PhoH family protein compare
PFLU_RS22395 -3.1 -5.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS30615 -3.1 -2.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS02430 -3.1 -15.2 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS03880 -3.1 -12.8 ATP-dependent chaperone ClpB compare
PFLU_RS02355 -3.1 -3.0 GNAT family N-acetyltransferase compare
PFLU_RS18395 -3.1 -1.2 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS05235 -3.1 -9.6 leucyl aminopeptidase compare
PFLU_RS03665 -3.1 -6.0 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS27495 -3.1 -16.9 SpoVR family protein compare
PFLU_RS09005 -3.0 -15.2 molecular chaperone HtpG compare
PFLU_RS01885 -3.0 -2.1 Sec-independent protein translocase subunit TatB compare
PFLU_RS22075 -3.0 -8.2 DUF3108 domain-containing protein compare
PFLU_RS28905 -3.0 -7.8 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS23675 -3.0 -2.5 hypothetical protein compare
PFLU_RS28650 -3.0 -6.4 RNA pyrophosphohydrolase compare
PFLU_RS26150 -3.0 -14.0 ATP-binding protein compare
PFLU_RS14420 -3.0 -2.8 chemotactic transduction protein ChpE compare
PFLU_RS26290 -3.0 -0.7 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS25755 -3.0 -2.1 pantoate--beta-alanine ligase compare


Specific Phenotypes

For 74 genes in this experiment

For stress p-Coumaric acid in Pseudomonas fluorescens SBW25-INTG

For stress p-Coumaric acid across organisms