Experiment set11IT016 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most important genes:

  gene name fitness t score description  
ABZR87_RS00195 -7.3 -4.4 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS14950 -6.6 -3.3 acetolactate synthase small subunit compare
ABZR87_RS02145 -5.5 -2.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS13175 -5.4 -2.4 tRNA-Leu compare
ABZR87_RS01760 -5.0 -1.1 PP0621 family protein compare
ABZR87_RS00285 -5.0 -3.1 acetylornithine transaminase compare
ABZR87_RS07050 -4.8 -1.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS20370 -4.8 -1.0 ABC transporter ATP-binding protein compare
ABZR87_RS21095 -4.4 -1.0 TRAP transporter small permease compare
ABZR87_RS21940 -4.4 -1.0 hypothetical protein compare
ABZR87_RS05170 -4.3 -2.9 acetylglutamate kinase compare
ABZR87_RS18105 -4.0 -1.2 hypothetical protein compare
ABZR87_RS22920 -4.0 -5.4 phosphogluconate dehydratase compare
ABZR87_RS14955 -3.9 -8.0 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00835 -3.9 -9.6 argininosuccinate synthase compare
ABZR87_RS01675 -3.7 -2.4 carbohydrate kinase family protein compare
ABZR87_RS16185 -3.5 -1.7 dCTP deaminase compare
ABZR87_RS01810 -3.3 -2.8 glutamate 5-kinase compare
ABZR87_RS22520 -3.3 -2.9 ABATE domain-containing protein compare
ABZR87_RS08645 -3.3 -1.0 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS09515 -3.3 -1.6 cysteine synthase CysM compare
ABZR87_RS17440 -3.3 -1.0 (2Fe-2S)-binding protein compare
ABZR87_RS22910 -3.3 -2.2 6-phosphogluconolactonase compare
ABZR87_RS10085 -3.2 -2.2 Rne/Rng family ribonuclease compare
ABZR87_RS09465 -3.2 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS01605 -3.2 -5.4 shikimate dehydrogenase compare
ABZR87_RS00875 -3.1 -4.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS14490 -3.1 -7.0 tryptophan synthase subunit alpha compare
ABZR87_RS08530 -3.0 -2.0 Flp family type IVb pilin compare
ABZR87_RS00210 -3.0 -6.0 nitrite/sulfite reductase compare
ABZR87_RS02640 -3.0 -8.5 diaminopimelate decarboxylase compare
ABZR87_RS14535 -2.9 -3.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS18165 -2.9 -1.7 hypothetical protein compare
ABZR87_RS07380 -2.9 -10.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS01700 -2.8 -1.7 DUF2147 domain-containing protein compare
ABZR87_RS11440 -2.8 -5.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS16140 -2.8 -9.6 phosphoenolpyruvate carboxylase compare
ABZR87_RS00205 -2.8 -3.2 DUF934 domain-containing protein compare
ABZR87_RS10610 -2.8 -1.2 inositol monophosphatase family protein compare
ABZR87_RS02140 -2.7 -9.4 anthranilate synthase component I compare
ABZR87_RS00220 -2.7 -6.4 CysB family HTH-type transcriptional regulator compare
ABZR87_RS15440 -2.7 -3.8 ribonuclease G compare
ABZR87_RS11070 -2.6 -5.0 nitrogen regulation protein NR(I) compare
ABZR87_RS02160 -2.6 -3.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS13300 -2.5 -6.9 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS02565 -2.5 -3.0 glutamate synthase subunit beta compare
ABZR87_RS01110 -2.5 -4.7 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS07620 -2.5 -4.4 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS07665 -2.5 -6.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS11815 -2.5 -6.0 [protein-PII] uridylyltransferase compare
ABZR87_RS09450 -2.4 -4.2 prephenate dehydratase compare
ABZR87_RS05590 -2.4 -1.7 orotate phosphoribosyltransferase compare
ABZR87_RS14500 -2.4 -7.0 tryptophan synthase subunit beta compare
ABZR87_RS19095 -2.4 -3.9 gluconate:H+ symporter compare
ABZR87_RS14530 -2.4 -4.6 3-isopropylmalate dehydrogenase compare
ABZR87_RS05100 -2.4 -3.6 RNA polymerase-binding protein DksA compare
ABZR87_RS07360 -2.3 -5.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS03780 -2.3 -1.4 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS04865 -2.3 -3.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02570 -2.2 -11.6 glutamate synthase-related protein compare
ABZR87_RS22970 -2.2 -5.9 cystathionine gamma-synthase family protein compare
ABZR87_RS05200 -2.1 -7.9 homoserine O-acetyltransferase compare
ABZR87_RS07635 -2.1 -2.9 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS02155 -2.0 -4.2 anthranilate phosphoribosyltransferase compare
ABZR87_RS08230 -2.0 -3.5 hypothetical protein compare
ABZR87_RS14540 -2.0 -2.8 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS20495 -2.0 -1.1 hypothetical protein compare
ABZR87_RS11065 -2.0 -4.1 nitrogen regulation protein NR(II) compare
ABZR87_RS00190 -2.0 -5.0 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS12790 -1.9 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS12100 -1.9 -1.5 DsbA family protein compare
ABZR87_RS00185 -1.9 -2.1 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS22420 -1.9 -1.7 nuclear transport factor 2 family protein compare
ABZR87_RS09445 -1.9 -5.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS07060 -1.9 -6.0 RNA polymerase factor sigma-54 compare
ABZR87_RS04125 -1.9 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS00215 -1.9 -3.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS00200 -1.9 -2.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS07430 -1.8 -1.5 FmdB family zinc ribbon protein compare
ABZR87_RS10785 -1.8 -4.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS02595 -1.8 -3.7 shikimate kinase compare
ABZR87_RS18875 -1.8 -2.9 nitrite reductase small subunit NirD compare
ABZR87_RS09615 -1.8 -1.3 50S ribosomal protein L19 compare
ABZR87_RS02590 -1.8 -4.9 3-dehydroquinate synthase compare
ABZR87_RS13475 -1.8 -4.7 PAS domain S-box protein compare
ABZR87_RS01645 -1.8 -3.1 type II 3-dehydroquinate dehydratase compare
ABZR87_RS23220 -1.8 -4.2 xylose ABC transporter ATP-binding protein compare
ABZR87_RS16180 -1.8 -3.3 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS10800 -1.7 -1.8 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS08700 -1.7 -6.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS10525 -1.7 -1.1 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS02325 -1.7 -2.6 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS16080 -1.7 -1.5 P-II family nitrogen regulator compare
ABZR87_RS13645 -1.7 -0.9 hypothetical protein compare
ABZR87_RS01555 -1.7 -1.0 barstar family protein compare
ABZR87_RS12965 -1.7 -1.8 tail protein X compare
ABZR87_RS12960 -1.6 -1.0 head completion/stabilization protein compare
ABZR87_RS07320 -1.6 -2.7 gluconokinase compare
ABZR87_RS14235 -1.6 -3.6 formyltetrahydrofolate deformylase compare
ABZR87_RS01245 -1.6 -3.8 Dps family protein compare
ABZR87_RS08655 -1.6 -3.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS17760 -1.6 -1.3 ATP-binding cassette domain-containing protein compare
ABZR87_RS22000 -1.6 -1.7 hypothetical protein compare
ABZR87_RS00745 -1.6 -1.2 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS08625 -1.6 -0.9 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS15380 -1.5 -1.3 SDR family oxidoreductase compare
ABZR87_RS12795 -1.5 -3.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS23225 -1.4 -4.1 sugar ABC transporter permease compare
ABZR87_RS04785 -1.4 -4.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS16170 -1.4 -1.7 argininosuccinate lyase compare
ABZR87_RS18910 -1.4 -1.1 DUF2239 family protein compare
ABZR87_RS02850 -1.4 -1.7 elongation factor Tu compare
ABZR87_RS05065 -1.4 -2.3 tyrosine recombinase XerC compare
ABZR87_RS11010 -1.4 -1.6 oxidative damage protection protein compare
ABZR87_RS22645 -1.4 -1.8 hypothetical protein compare
ABZR87_RS03900 -1.4 -3.6 glycerate kinase compare
ABZR87_RS13790 -1.4 -4.1 chorismate synthase compare
ABZR87_RS18630 -1.3 -1.6 class II fumarate hydratase compare
ABZR87_RS21285 -1.3 -1.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS15320 -1.3 -1.4 DUF969 domain-containing protein compare
ABZR87_RS23215 -1.3 -2.9 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS13290 -1.3 -1.8 3-ketoacyl-ACP reductase compare
ABZR87_RS06880 -1.3 -1.8 VOC family protein compare
ABZR87_RS14505 -1.3 -1.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS11125 -1.3 -3.1 cell division protein ZapE compare
ABZR87_RS06355 -1.3 -2.3 SPOR domain-containing protein compare
ABZR87_RS10780 -1.3 -2.5 PD-(D/E)XK nuclease family protein compare
ABZR87_RS21375 -1.2 -1.2 DUF6566 family protein compare
ABZR87_RS06030 -1.2 -0.6 AraC family transcriptional regulator compare
ABZR87_RS14745 -1.2 -0.9 urease subunit gamma compare
ABZR87_RS09875 -1.2 -0.9 GNAT family protein compare
ABZR87_RS06395 -1.2 -2.7 response regulator compare
ABZR87_RS14005 -1.2 -1.9 MerR family transcriptional regulator compare
ABZR87_RS01225 -1.2 -2.0 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS07730 -1.2 -1.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS04600 -1.2 -4.0 DUF4142 domain-containing protein compare
ABZR87_RS10165 -1.2 -4.7 RNA polymerase sigma factor RpoE compare
ABZR87_RS00830 -1.2 -1.6 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS19205 -1.2 -1.2 hypothetical protein compare
ABZR87_RS22915 -1.2 -4.5 glucose-6-phosphate dehydrogenase compare
ABZR87_RS23035 -1.2 -0.8 PIG-L family deacetylase compare
ABZR87_RS18870 -1.2 -4.2 nitrite reductase large subunit NirB compare
ABZR87_RS13500 -1.1 -1.7 homoprotocatechuate degradation operon regulator HpaR compare
ABZR87_RS19085 -1.1 -2.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
ABZR87_RS13540 -1.1 -1.0 DUF1488 family protein compare
ABZR87_RS15680 -1.1 -3.8 DNA polymerase I compare
ABZR87_RS20505 -1.1 -1.8 hypothetical protein compare
ABZR87_RS19320 -1.1 -0.7 hypothetical protein compare
ABZR87_RS09510 -1.1 -1.5 helix-hairpin-helix domain-containing protein compare
ABZR87_RS08505 -1.1 -1.3 CpaE family protein compare
ABZR87_RS09415 -1.1 -2.3 HAD-IA family hydrolase compare
ABZR87_RS13250 -1.1 -0.9 phosphoserine phosphatase SerB compare
ABZR87_RS23315 -1.1 -1.3 MarR family transcriptional regulator compare
ABZR87_RS07035 -1.1 -3.4 RNase adapter RapZ compare
ABZR87_RS18335 -1.1 -0.8 GntR family transcriptional regulator compare
ABZR87_RS05470 -1.1 -0.7 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS01775 -1.1 -3.3 hypoxanthine-guanine phosphoribosyltransferase compare
ABZR87_RS17845 -1.1 -1.2 Crp/Fnr family transcriptional regulator compare
ABZR87_RS00275 -1.0 -2.8 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS16250 -1.0 -1.7 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS15575 -1.0 -1.5 hypothetical protein compare
ABZR87_RS17455 -1.0 -2.6 AraC family transcriptional regulator compare
ABZR87_RS23210 -1.0 -4.5 carbohydrate porin compare
ABZR87_RS10930 -1.0 -0.8 outer membrane protein assembly factor BamB compare
ABZR87_RS12970 -1.0 -1.3 putative holin compare
ABZR87_RS22255 -1.0 -1.9 flagellar basal body P-ring protein FlgI compare
ABZR87_RS04190 -1.0 -1.0 hypothetical protein compare
ABZR87_RS19170 -1.0 -2.5 DMT family transporter compare
ABZR87_RS23265 -1.0 -1.2 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS13010 -0.9 -0.7 GPW/gp25 family protein compare
ABZR87_RS11015 -0.9 -2.2 amino-acid N-acetyltransferase compare
ABZR87_RS20250 -0.9 -1.1 type VI secretion system lipoprotein TssJ compare
ABZR87_RS10565 -0.9 -1.8 cupin domain-containing protein compare
ABZR87_RS09970 -0.9 -2.0 sugar ABC transporter substrate-binding protein compare
ABZR87_RS08965 -0.9 -1.4 tol-pal system-associated acyl-CoA thioesterase compare
ABZR87_RS22580 -0.9 -1.8 hypothetical protein compare
ABZR87_RS06845 -0.9 -3.0 heme o synthase compare
ABZR87_RS02480 -0.9 -1.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS11370 -0.9 -1.9 DUF47 domain-containing protein compare
ABZR87_RS08205 -0.9 -0.6 hypothetical protein compare
ABZR87_RS12785 -0.9 -2.2 endopeptidase La compare
ABZR87_RS10300 -0.9 -1.0 response regulator transcription factor compare
ABZR87_RS12990 -0.9 -1.3 phage tail protein compare
ABZR87_RS13145 -0.9 -1.2 hypothetical protein compare
ABZR87_RS06910 -0.9 -1.2 ANTAR domain-containing protein compare
ABZR87_RS02320 -0.9 -0.7 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS13285 -0.9 -3.9 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS01450 -0.9 -0.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS18190 -0.9 -1.2 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS23060 -0.9 -2.1 SDR family oxidoreductase compare
ABZR87_RS11435 -0.9 -1.3 Mth938-like domain-containing protein compare
ABZR87_RS11585 -0.9 -0.8 gamma-glutamylcyclotransferase compare
ABZR87_RS07965 -0.9 -2.0 recombinase RecA compare
ABZR87_RS00435 -0.9 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS22485 -0.8 -2.1 FAD-dependent oxidoreductase compare
ABZR87_RS22145 -0.8 -1.7 organic hydroperoxide resistance protein compare
ABZR87_RS23175 -0.8 -1.4 ABC transporter ATP-binding protein compare
ABZR87_RS02365 -0.8 -1.8 ClpXP protease specificity-enhancing factor compare
ABZR87_RS00070 -0.8 -2.4 adenosylcobinamide-GDP ribazoletransferase compare
ABZR87_RS11320 -0.8 -1.1 cupin domain-containing protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in nitrogen source experiments

For nitrogen source Sodium nitrite across organisms