Experiment set11IT016 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrite 0.5mM

200 most detrimental genes:

  gene name fitness t score description  
ABZR87_RS03420 +2.0 1.6 type II secretion system minor pseudopilin GspI compare
ABZR87_RS14890 +1.6 1.3 preprotein translocase subunit SecG compare
ABZR87_RS20450 +1.6 2.4 HAD family phosphatase compare
ABZR87_RS22340 +1.5 1.5 hypothetical protein compare
ABZR87_RS09895 +1.4 2.1 DUF1841 family protein compare
ABZR87_RS14080 +1.4 3.9 phosphate signaling complex protein PhoU compare
ABZR87_RS10070 +1.3 2.2 gephyrin-like molybdotransferase Glp compare
ABZR87_RS23380 +1.3 2.1 chemotaxis protein CheW compare
ABZR87_RS22060 +1.3 2.9 flagellar export protein FliJ compare
ABZR87_RS02485 +1.2 1.1 MarC family protein compare
ABZR87_RS04995 +1.2 2.1 DNA topoisomerase III compare
ABZR87_RS14625 +1.2 3.3 hypothetical protein compare
ABZR87_RS05130 +1.2 0.9 CsbD family protein compare
ABZR87_RS14415 +1.2 1.0 hemin uptake protein HemP compare
ABZR87_RS15505 +1.2 1.3 DNA polymerase III subunit alpha compare
ABZR87_RS16720 +1.2 1.6 collagen-like triple helix repeat-containing protein compare
ABZR87_RS18140 +1.1 2.8 type III secretion system export apparatus subunit SctR compare
ABZR87_RS00020 +1.1 2.3 DUF3460 family protein compare
ABZR87_RS15275 +1.1 1.6 hypothetical protein compare
ABZR87_RS18655 +1.1 1.7 carbohydrate kinase compare
ABZR87_RS22190 +1.1 4.8 flagellar basal body-associated protein FliL compare
ABZR87_RS11760 +1.1 0.6 membrane protein compare
ABZR87_RS12120 +1.1 0.8 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS19560 +1.1 4.1 lipoprotein compare
ABZR87_RS19545 +1.1 4.5 CpaF family protein compare
ABZR87_RS04945 +1.0 1.7 DUF4390 domain-containing protein compare
ABZR87_RS08750 +1.0 3.1 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS10450 +1.0 2.6 alpha/beta hydrolase compare
ABZR87_RS10240 +1.0 1.3 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS20690 +1.0 1.8 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS15240 +1.0 0.9 YicC/YloC family endoribonuclease compare
ABZR87_RS00385 +1.0 1.0 response regulator transcription factor compare
ABZR87_RS15715 +1.0 3.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS22055 +1.0 2.6 flagellar hook-length control protein FliK compare
ABZR87_RS08045 +1.0 3.6 zinc-finger domain-containing protein compare
ABZR87_RS14050 +1.0 2.4 phosphohistidine phosphatase SixA compare
ABZR87_RS18400 +1.0 1.3 hypothetical protein compare
ABZR87_RS07510 +1.0 2.1 LysR family transcriptional regulator compare
ABZR87_RS22165 +1.0 1.3 flagellar export chaperone FliS compare
ABZR87_RS21345 +1.0 1.8 tRNA-OTHER compare
ABZR87_RS02440 +1.0 4.5 twin-arginine translocase subunit TatC compare
ABZR87_RS12260 +1.0 1.7 (2Fe-2S)-binding protein compare
ABZR87_RS23180 +0.9 1.0 ABC transporter ATP-binding protein compare
ABZR87_RS19555 +0.9 4.6 type II secretion system F family protein compare
ABZR87_RS07735 +0.9 1.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS21470 +0.9 1.4 P-II family nitrogen regulator compare
ABZR87_RS11790 +0.9 2.4 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS19540 +0.9 3.2 CpaE family protein compare
ABZR87_RS12130 +0.9 0.4 LysR substrate-binding domain-containing protein compare
ABZR87_RS00230 +0.9 1.7 NAD(P)-dependent oxidoreductase compare
ABZR87_RS17085 +0.9 2.8 hypothetical protein compare
ABZR87_RS10285 +0.9 4.9 FecR domain-containing protein compare
ABZR87_RS10910 +0.9 1.0 RodZ family helix-turn-helix domain-containing protein compare
ABZR87_RS21480 +0.9 4.5 efflux RND transporter periplasmic adaptor subunit compare
ABZR87_RS08440 +0.9 2.9 hypothetical protein compare
ABZR87_RS10700 +0.9 3.4 C40 family peptidase compare
ABZR87_RS02115 +0.9 3.4 murein transglycosylase A compare
ABZR87_RS16885 +0.8 1.3 hypothetical protein compare
ABZR87_RS23095 +0.8 0.8 MarR family transcriptional regulator compare
ABZR87_RS21365 +0.8 0.8 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS14760 +0.8 1.6 urea ABC transporter ATP-binding protein UrtD compare
ABZR87_RS12000 +0.8 1.5 DUF2182 domain-containing protein compare
ABZR87_RS10280 +0.8 3.1 response regulator transcription factor compare
ABZR87_RS10400 +0.8 1.5 hypothetical protein compare
ABZR87_RS05145 +0.8 1.1 copper chaperone PCu(A)C compare
ABZR87_RS02555 +0.8 2.6 ABC transporter ATP-binding protein compare
ABZR87_RS17180 +0.8 2.3 class I SAM-dependent methyltransferase compare
ABZR87_RS19535 +0.8 5.2 type II and III secretion system protein family protein compare
ABZR87_RS04215 +0.8 2.1 ABC transporter ATP-binding protein compare
ABZR87_RS05140 +0.8 1.0 ATP-binding protein compare
ABZR87_RS04565 +0.8 1.7 PaaI family thioesterase compare
ABZR87_RS11980 +0.8 0.6 cold-shock protein compare
ABZR87_RS18325 +0.8 1.3 ferredoxin family protein compare
ABZR87_RS19370 +0.8 1.3 hypothetical protein compare
ABZR87_RS21240 +0.8 1.9 1,2-phenylacetyl-CoA epoxidase subunit PaaE compare
ABZR87_RS09505 +0.8 3.4 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS12605 +0.8 1.5 ABC transporter ATP-binding protein compare
ABZR87_RS22260 +0.8 1.0 flagellar basal body L-ring protein FlgH compare
ABZR87_RS13630 +0.8 3.3 hypothetical protein compare
ABZR87_RS13750 +0.8 2.8 RidA family protein compare
ABZR87_RS20825 +0.8 2.0 nuclear transport factor 2 family protein compare
ABZR87_RS08510 +0.8 1.6 hypothetical protein compare
ABZR87_RS17650 +0.8 2.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS18280 +0.8 2.6 cysteine hydrolase family protein compare
ABZR87_RS10845 +0.7 2.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS15190 +0.7 4.1 PHB depolymerase family esterase compare
ABZR87_RS07115 +0.7 2.4 Na/Pi cotransporter family protein compare
ABZR87_RS16985 +0.7 1.4 DJ-1/PfpI family protein compare
ABZR87_RS06295 +0.7 1.6 acyl-CoA dehydrogenase family protein compare
ABZR87_RS17370 +0.7 2.1 DUF1854 domain-containing protein compare
ABZR87_RS22010 +0.7 1.3 hypothetical protein compare
ABZR87_RS02150 +0.7 1.0 lysozyme inhibitor LprI family protein compare
ABZR87_RS05570 +0.7 2.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS19570 +0.7 4.3 TadG family pilus assembly protein compare
ABZR87_RS01005 +0.7 1.1 RNA-binding S4 domain-containing protein compare
ABZR87_RS09350 +0.7 2.3 NUDIX hydrolase compare
ABZR87_RS01455 +0.7 2.5 SDR family oxidoreductase compare
ABZR87_RS19520 +0.7 4.4 prepilin peptidase compare
ABZR87_RS14330 +0.7 0.5 hypothetical protein compare
ABZR87_RS01460 +0.7 4.1 aldose 1-epimerase compare
ABZR87_RS22705 +0.7 2.9 DUF4349 domain-containing protein compare
ABZR87_RS07005 +0.7 1.5 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS13410 +0.7 2.9 (Fe-S)-binding protein compare
ABZR87_RS03705 +0.7 0.9 DUF2892 domain-containing protein compare
ABZR87_RS20130 +0.7 2.6 hypothetical protein compare
ABZR87_RS21225 +0.7 0.5 LysR family transcriptional regulator compare
ABZR87_RS02075 +0.7 0.7 23S ribosomal RNA compare
ABZR87_RS18950 +0.7 1.7 3-keto-5-aminohexanoate cleavage protein compare
ABZR87_RS20155 +0.7 1.6 type VI secretion system-associated protein TagF compare
ABZR87_RS00175 +0.7 1.4 LysR family transcriptional regulator compare
ABZR87_RS15290 +0.7 0.8 hypothetical protein compare
ABZR87_RS03110 +0.7 1.9 alpha/beta fold hydrolase compare
ABZR87_RS11390 +0.7 3.4 PhoH family protein compare
ABZR87_RS08165 +0.7 1.3 amidase compare
ABZR87_RS20300 +0.7 1.3 hypothetical protein compare
ABZR87_RS19735 +0.7 2.9 hypothetical protein compare
ABZR87_RS09440 +0.7 1.9 DUF2059 domain-containing protein compare
ABZR87_RS22835 +0.7 1.6 2OG-Fe(II) oxygenase compare
ABZR87_RS12490 +0.7 0.9 DUF4936 family protein compare
ABZR87_RS06305 +0.7 2.0 acetyl-CoA C-acetyltransferase compare
ABZR87_RS19740 +0.7 1.7 BON domain-containing protein compare
ABZR87_RS19505 +0.7 2.6 collagen-like triple helix repeat-containing protein compare
ABZR87_RS07385 +0.7 1.6 HIT family protein compare
ABZR87_RS17410 +0.7 1.6 GTP-binding protein compare
ABZR87_RS11600 +0.7 1.5 aspartate/glutamate racemase family protein compare
ABZR87_RS03200 +0.7 2.3 response regulator transcription factor compare
ABZR87_RS14450 +0.7 1.6 glycine zipper 2TM domain-containing protein compare
ABZR87_RS13120 +0.7 2.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS07850 +0.7 2.1 DEAD/DEAH box helicase compare
ABZR87_RS15430 +0.7 2.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
ABZR87_RS14320 +0.7 1.6 (2Fe-2S)-binding protein compare
ABZR87_RS18080 +0.7 1.1 hypothetical protein compare
ABZR87_RS01155 +0.7 2.3 CidA/LrgA family protein compare
ABZR87_RS18150 +0.7 2.1 LuxR family transcriptional regulator compare
ABZR87_RS13085 +0.7 1.6 hypothetical protein compare
ABZR87_RS09500 +0.7 1.4 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS13885 +0.7 1.6 PAAR domain-containing protein compare
ABZR87_RS01470 +0.7 1.4 L-arabinose ABC transporter permease AraH compare
ABZR87_RS21735 +0.7 0.7 DUF2917 domain-containing protein compare
ABZR87_RS22205 +0.6 0.9 flagellar biosynthetic protein FliO compare
ABZR87_RS10310 +0.6 1.5 FadR/GntR family transcriptional regulator compare
ABZR87_RS10015 +0.6 1.5 Fe-S cluster assembly protein IscX compare
ABZR87_RS19500 +0.6 4.9 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
ABZR87_RS18300 +0.6 2.5 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABZR87_RS05990 +0.6 2.1 AraC family transcriptional regulator compare
ABZR87_RS11300 +0.6 2.6 tRNA dihydrouridine(20/20a) synthase DusA compare
ABZR87_RS10870 +0.6 2.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS19760 +0.6 1.7 DUF2282 domain-containing protein compare
ABZR87_RS03075 +0.6 2.9 AGE family epimerase/isomerase compare
ABZR87_RS10295 +0.6 2.0 hypothetical protein compare
ABZR87_RS08400 +0.6 1.2 glycine zipper 2TM domain-containing protein compare
ABZR87_RS22540 +0.6 2.0 GNAT family N-acetyltransferase compare
ABZR87_RS17960 +0.6 2.7 chemotaxis protein CheA compare
ABZR87_RS17620 +0.6 1.9 LysR family transcriptional regulator compare
ABZR87_RS01485 +0.6 0.9 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS18510 +0.6 1.4 hypothetical protein compare
ABZR87_RS18415 +0.6 0.6 hypothetical protein compare
ABZR87_RS02445 +0.6 1.9 Sec-independent protein translocase protein TatB compare
ABZR87_RS21560 +0.6 1.7 Lrp/AsnC family transcriptional regulator compare
ABZR87_RS19000 +0.6 2.0 hypothetical protein compare
ABZR87_RS10345 +0.6 2.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS22415 +0.6 1.1 universal stress protein compare
ABZR87_RS21190 +0.6 1.5 transporter substrate-binding domain-containing protein compare
ABZR87_RS04270 +0.6 1.8 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS14665 +0.6 0.5 histidine phosphatase family protein compare
ABZR87_RS01250 +0.6 1.4 hypothetical protein compare
ABZR87_RS11075 +0.6 1.2 hypothetical protein compare
ABZR87_RS23015 +0.6 1.2 glycosyltransferase family 9 protein compare
ABZR87_RS15615 +0.6 2.1 GatB/YqeY domain-containing protein compare
ABZR87_RS20380 +0.6 2.3 ABC transporter substrate-binding protein compare
ABZR87_RS18755 +0.6 2.6 DUF1488 family protein compare
ABZR87_RS11270 +0.6 2.2 amino acid ABC transporter permease compare
ABZR87_RS17405 +0.6 1.2 nucleobase:cation symporter-2 family protein compare
ABZR87_RS11560 +0.6 1.0 2TM domain-containing protein compare
ABZR87_RS13635 +0.6 2.9 hypothetical protein compare
ABZR87_RS09275 +0.6 2.0 tripartite tricarboxylate transporter TctB family protein compare
ABZR87_RS06350 +0.6 2.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS20620 +0.6 2.9 hypothetical protein compare
ABZR87_RS19565 +0.6 2.1 DUF3613 domain-containing protein compare
ABZR87_RS20430 +0.6 1.0 YfiR family protein compare
ABZR87_RS15005 +0.6 2.1 TIGR00730 family Rossman fold protein compare
ABZR87_RS00120 +0.6 2.0 SIMPL domain-containing protein compare
ABZR87_RS20090 +0.6 1.0 universal stress protein compare
ABZR87_RS19550 +0.6 2.4 type II secretion system F family protein compare
ABZR87_RS00240 +0.6 3.1 dihydroxy-acid dehydratase compare
ABZR87_RS18975 +0.6 0.7 entericidin A/B family lipoprotein compare
ABZR87_RS04835 +0.6 1.4 hypothetical protein compare
ABZR87_RS02190 +0.6 1.8 DsbC family protein compare
ABZR87_RS21135 +0.6 1.6 FMN reductase compare
ABZR87_RS11080 +0.6 1.9 HAD family hydrolase compare
ABZR87_RS12180 +0.6 1.9 hypothetical protein compare
ABZR87_RS12425 +0.6 0.7 ABC transporter ATP-binding protein compare
ABZR87_RS22710 +0.6 1.2 VOC family protein compare
ABZR87_RS04940 +0.6 2.0 PAS domain-containing sensor histidine kinase compare
ABZR87_RS19530 +0.6 1.7 Flp pilus assembly protein CpaB compare
ABZR87_RS19525 +0.6 2.3 TadE/TadG family type IV pilus assembly protein compare
ABZR87_RS12045 +0.5 1.6 ureidoglycolate lyase compare
ABZR87_RS04250 +0.5 2.5 delta(1)-pyrroline-2-carboxylate reductase family protein compare
ABZR87_RS12600 +0.5 1.6 ABC transporter ATP-binding protein compare
ABZR87_RS13090 +0.5 2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in nitrogen source experiments

For nitrogen source Sodium nitrite across organisms