Experiment set11IT015 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Asiaticoside 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -3.9 -4.5 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4340 -3.4 -9.3 phosphomethylpyrimidine kinase, putative compare
Psyr_4684 -3.4 -3.3 biotin synthesis protein BioC compare
Psyr_0383 -3.3 -3.2 Twin-arginine translocation protein TatB compare
Psyr_4686 -3.3 -5.8 8-amino-7-oxononanoate synthase compare
Psyr_4991 -3.2 -3.1 hypothetical protein compare
Psyr_3008 -3.2 -7.8 Undecaprenyl-diphosphatase compare
Psyr_4203 -3.1 -2.9 SsrA-binding protein compare
Psyr_1544 -3.0 -5.6 SirA-like protein compare
Psyr_1613 -3.0 -5.2 septum site-determining protein MinC compare
Psyr_4740 -2.8 -6.6 thiazole-phosphate synthase compare
Psyr_0849 -2.7 -10.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_3808 -2.5 -2.7 hypothetical protein compare
Psyr_1663 -2.5 -4.0 phosphoribosylanthranilate isomerase compare
Psyr_4341 -2.4 -7.3 thiamine-phosphate diphosphorylase compare
Psyr_4687 -2.4 -7.4 biotin synthase compare
Psyr_0475 -2.3 -3.0 Protein of unknown function YGGT compare
Psyr_0917 -2.2 -10.6 ABC-2 compare
Psyr_0574 -2.1 -5.7 protease FtsH subunit HflK compare
Psyr_0454 -2.1 -5.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4091 -2.1 -4.5 8-oxo-dGTPase compare
Psyr_4683 -2.1 -4.4 dethiobiotin synthase compare
Psyr_5132 -2.0 -4.0 Glucose-inhibited division protein A subfamily compare
Psyr_2346 -1.9 -6.4 conserved hypothetical protein compare
Psyr_4822 -1.9 -3.6 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_2347 -1.8 -2.3 hypothetical protein compare
Psyr_5135 -1.8 -2.5 Protein of unknown function DUF37 compare
Psyr_4580 -1.7 -2.9 anthranilate phosphoribosyltransferase compare
Psyr_3581 -1.6 -6.1 ribosomal large subunit pseudouridine synthase B compare
Psyr_0918 -1.5 -9.1 ABC transporter compare
Psyr_0575 -1.5 -3.1 protease FtsH subunit HflC compare
Psyr_2462 -1.5 -4.4 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0826 -1.5 -6.6 glucose-6-phosphate isomerase compare
Psyr_0565 -1.5 -4.5 Protein of unknown function UPF0126 compare
Psyr_1408 -1.5 -3.0 Holliday junction endonuclease RuvC compare
Psyr_4884 -1.5 -5.3 Rhodanese-like protein compare
Psyr_4754 -1.5 -2.5 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4089 -1.4 -5.5 PAS compare
Psyr_3179 -1.4 -2.5 DNA translocase FtsK compare
Psyr_4627 -1.4 -2.4 dimethyladenosine transferase compare
Psyr_1907 -1.4 -3.3 GTP cyclohydrolase I compare
Psyr_1748 -1.4 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4581 -1.3 -1.4 anthranilate synthase, component II compare
Psyr_1975 -1.3 -3.6 Integrase, catalytic region compare
Psyr_0493 -1.3 -3.5 CheW-like protein compare
Psyr_1885 -1.2 -1.8 hypothetical protein compare
Psyr_1556 -1.2 -1.9 hypothetical protein compare
Psyr_2854 -1.2 -4.0 conserved hypothetical protein compare
Psyr_1751 -1.2 -3.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_2980 -1.2 -2.5 UDP-glucose pyrophosphorylase compare
Psyr_4136 -1.2 -2.2 BolA-like protein compare
Psyr_1747 -1.2 -3.6 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_3701 -1.1 -1.7 thioredoxin, putative compare
Psyr_3013 -1.1 -2.2 magnesium chelatase subunit ChlD compare
Psyr_4194 -1.1 -3.9 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_2285 -1.1 -2.3 Twin-arginine translocation pathway signal compare
Psyr_4350 -1.1 -2.5 Protein of unknown function DUF218 compare
Psyr_2769 -1.1 -3.4 conserved hypothetical protein compare
Psyr_2641 -1.1 -2.0 hypothetical protein compare
Psyr_4490 -1.1 -2.2 transcriptional regulator, DeoR family compare
Psyr_0215 -1.1 -6.7 Exodeoxyribonuclease III xth compare
Psyr_4808 -1.1 -1.0 conserved hypothetical protein compare
Psyr_3954 -1.1 -3.8 GTP-binding protein LepA compare
Psyr_0281 -1.1 -3.2 ABC transporter compare
Psyr_3702 -1.1 -2.4 Arsenate reductase compare
Psyr_1350 -1.0 -2.5 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_3466 -1.0 -2.1 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_0535 -1.0 -2.7 toluene tolerance protein, putative compare
Psyr_1419 -1.0 -2.2 preQ(0) biosynthesis protein QueC compare
Psyr_1667 -1.0 -4.0 Colicin V production protein compare
Psyr_2804 -1.0 -2.9 hypothetical protein compare
Psyr_2143 -1.0 -1.9 delta1-piperideine 2-carboxylate reductase compare
Psyr_4622 -1.0 -3.0 Nucleotidyl transferase compare
Psyr_2642 -1.0 -3.0 hypothetical protein compare
Psyr_1373 -1.0 -1.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4278 -0.9 -1.7 regulatory protein, LuxR compare
Psyr_2848 -0.9 -2.9 hypothetical protein compare
Psyr_4112 -0.9 -5.9 Protein of unknown function UPF0011 compare
Psyr_5065 -0.9 -5.2 ATP-dependent DNA helicase UvrD compare
Psyr_4512 -0.9 -4.5 putative phage-related protein compare
Psyr_3120 -0.9 -1.8 D-glucarate dehydratase compare
Psyr_4407 -0.9 -1.7 phosphoribosylamine--glycine ligase compare
Psyr_4609 -0.9 -6.2 anthranilate synthase, component I compare
Psyr_1371 -0.9 -4.8 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_2190 -0.9 -2.1 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_1749 -0.9 -4.5 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_0487 -0.9 -1.8 glutathione synthase compare
Psyr_0034 -0.9 -1.1 tryptophan synthase, beta chain compare
Psyr_0282 -0.9 -3.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0014 -0.9 -2.6 lipid A biosynthesis acyltransferase compare
Psyr_0184 -0.9 -2.9 Protein of unknown function DUF484 compare
Psyr_1555 -0.9 -2.4 Cobyrinic acid a,c-diamide synthase compare
Psyr_RNA28 -0.9 -1.6 tRNA-Val compare
Psyr_1935 -0.9 -4.0 Protein of unknown function DUF796 compare
Psyr_4118 -0.9 -3.9 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_4362 -0.9 -2.1 Rare lipoprotein A compare
Psyr_0394 -0.9 -3.6 Heat shock protein HslU compare
Psyr_1410 -0.9 -2.8 Holliday junction DNA helicase RuvB compare
Psyr_3807 -0.8 -3.3 hypothetical protein compare
Psyr_4978 -0.8 -1.5 hypothetical protein compare
Psyr_2823 -0.8 -1.1 hypothetical protein compare
Psyr_5130 -0.8 -5.1 chromosome segregation ATPase compare
Psyr_0529 -0.8 -3.6 Glycosyl transferase, group 1 compare
Psyr_3583 -0.8 -2.5 condensin subunit ScpB compare
Psyr_0259 -0.8 -2.0 Osmolarity sensor protein envZ compare
Psyr_2471 -0.8 -1.4 hydroxymethylglutaryl-CoA lyase compare
Psyr_2560 -0.8 -2.9 hypothetical protein compare
Psyr_0464 -0.8 -1.8 hypothetical protein compare
Psyr_3164 -0.8 -4.9 Protein of unknown function UPF0005 compare
Psyr_1931 -0.8 -3.2 hypothetical protein compare
Psyr_2428 -0.8 -2.8 GCN5-related N-acetyltransferase compare
Psyr_2141 -0.8 -1.5 hypothetical protein compare
Psyr_1227 -0.8 -2.2 Queuosine biosynthesis protein compare
Psyr_5133 -0.8 -2.4 tRNA modification GTPase trmE compare
Psyr_2824 -0.8 -2.5 conserved hypothetical protein compare
Psyr_2921 -0.8 -2.2 ADP-ribosylglycohydrolase compare
Psyr_5078 -0.8 -2.7 conserved hypothetical protein compare
Psyr_0579 -0.8 -5.6 RNAse R compare
Psyr_0550 -0.8 -3.1 Protein of unknown function UPF0227 compare
Psyr_4519 -0.8 -4.1 General substrate transporter:Major facilitator superfamily compare
Psyr_3425 -0.7 -1.5 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_1505 -0.7 -2.0 Protein of unknown function DUF156 compare
Psyr_2899 -0.7 -2.3 conserved hypothetical protein compare
Psyr_3034 -0.7 -2.5 conserved hypothetical protein compare
Psyr_3854 -0.7 -1.2 OmpA/MotB compare
Psyr_4361 -0.7 -2.5 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_3419 -0.7 -2.7 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_2095 -0.7 -3.2 Conserved TM helix compare
Psyr_5129 -0.7 -2.4 chromosome segregation DNA-binding protein compare
Psyr_0498 -0.7 -2.5 Protein of unknown function DUF1445 compare
Psyr_2160 -0.7 -2.1 cold-shock DNA-binding protein family compare
Psyr_3616 -0.7 -4.5 Heat shock protein, Metallo peptidase, MEROPS family M48B compare
Psyr_0444 -0.7 -1.1 Malonate decarboxylase delta subunit compare
Psyr_0053 -0.7 -2.8 conserved hypothetical protein compare
Psyr_0920 -0.7 -6.3 Glycosyl transferase, group 1 compare
Psyr_1688 -0.7 -2.0 Protein of unknown function DUF1315 compare
Psyr_2030 -0.7 -1.0 Calcium-binding EF-hand compare
Psyr_1212 -0.7 -1.5 type III secretion protein HrpO compare
Psyr_0137 -0.7 -1.5 outer membrane transport energization protein ExbD compare
Psyr_3258 -0.7 -1.8 conserved hypothetical protein compare
Psyr_0983 -0.7 -3.9 Protein of unknown function DUF159 compare
Psyr_2071 -0.7 -0.8 outer membrane lipoprotein OprI compare
Psyr_1097 -0.7 -1.8 glycine cleavage system H protein compare
Psyr_2973 -0.7 -1.7 Glyoxalase I compare
Psyr_0743 -0.7 -3.4 CDS compare
Psyr_3932 -0.7 -1.3 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0919 -0.7 -4.7 Chromosome segregation ATPase-like protein compare
Psyr_4634 -0.7 -1.2 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_3620 -0.7 -0.8 hypothetical protein compare
Psyr_4699 -0.7 -3.0 Amino acid-binding ACT compare
Psyr_2105 -0.7 -2.3 conserved hypothetical protein compare
Psyr_0844 -0.7 -2.5 Protein of unknown function DUF446 compare
Psyr_4100 -0.7 -2.7 D-alanine--D-alanine ligase compare
Psyr_2855 -0.7 -1.7 methionine synthase (B12-independent) compare
Psyr_4116 -0.6 -1.5 Transport-associated protein compare
Psyr_3154 -0.6 -2.6 transcriptional regulator, TetR family compare
Psyr_2833 -0.6 -1.0 CDS compare
Psyr_4309 -0.6 -2.3 hypothetical protein compare
Psyr_2182 -0.6 -2.4 hypothetical protein compare
Psyr_2213 -0.6 -1.7 transcriptional regulator, AraC family compare
Psyr_4593 -0.6 -1.8 sigma factor domain protein compare
Psyr_3213 -0.6 -1.6 Propeptide, PepSY amd peptidase M4 compare
Psyr_1919 -0.6 -2.7 hypothetical protein compare
Psyr_2520 -0.6 -1.5 SOS-response transcriptional repressor, LexA compare
Psyr_3088 -0.6 -2.7 Glycosyl transferase, group 1 compare
Psyr_1461 -0.6 -3.1 hypothetical protein compare
Psyr_4019 -0.6 -1.5 H-NS family protein MvaT compare
Psyr_1983 -0.6 -2.5 3-isopropylmalate dehydratase, large subunit compare
Psyr_2339 -0.6 -2.2 hypothetical protein compare
Psyr_2836 -0.6 -2.2 hypothetical protein compare
Psyr_2114 -0.6 -2.3 two component transcriptional regulator, LuxR family compare
Psyr_3090 -0.6 -1.4 hypothetical protein compare
Psyr_1198 -0.6 -1.7 type III secretion protein HrpF compare
Psyr_0959 -0.6 -2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_3338 -0.6 -2.6 gluconate permease GntT compare
Psyr_0318 -0.6 -2.2 cell division protein ZapA compare
Psyr_3432 -0.6 -1.4 MotA/TolQ/ExbB proton channel compare
Psyr_0350 -0.6 -1.7 ABC transporter compare
Psyr_2433 -0.6 -2.3 conserved hypothetical protein compare
Psyr_2383 -0.6 -1.2 Protein of unknown function DUF72 compare
Psyr_2180 -0.6 -1.7 transcriptional regulator, LysR family compare
Psyr_4161 -0.6 -1.4 Rod shape-determining protein MreD compare
Psyr_0404 -0.6 -2.0 Fimbrial assembly compare
Psyr_4933 -0.6 -3.3 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_0571 -0.6 -1.8 tRNA isopentenyltransferase compare
Psyr_1864 -0.6 -2.1 spermidine synthase compare
Psyr_0435 -0.6 -1.2 membrane protein, putative compare
Psyr_2312 -0.6 -1.0 Protein of unknown function DUF24 compare
Psyr_2840 -0.6 -1.5 hypothetical protein compare
Psyr_3005 -0.6 -0.7 3-oxoadipate enol-lactonase compare
Psyr_1017 -0.6 -0.9 type III effector HopJ1 compare
Psyr_1121 -0.6 -1.3 6-phosphogluconolactonase compare
Psyr_0927 -0.6 -1.6 hypothetical protein compare
Psyr_3809 -0.6 -2.3 hypothetical protein compare
Psyr_1250 -0.6 -1.6 conserved hypothetical protein compare
Psyr_3658 -0.6 -3.8 Rhodanese-like protein compare
Psyr_2847 -0.6 -1.2 hypothetical protein compare
Psyr_4057 -0.6 -1.6 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_3840 -0.6 -2.2 conserved hypothetical protein compare
Psyr_1670 -0.6 -1.5 Short-chain dehydrogenase/reductase SDR compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Asiaticoside across organisms