Experiment set11IT015 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrite 1mM

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14950 -6.9 -4.5 acetolactate synthase small subunit compare
ABZR87_RS08645 -5.0 -1.5 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS14540 -4.7 -7.5 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS22920 -4.4 -7.0 phosphogluconate dehydratase compare
ABZR87_RS11815 -4.4 -11.9 [protein-PII] uridylyltransferase compare
ABZR87_RS21940 -4.4 -1.3 hypothetical protein compare
ABZR87_RS13250 -4.3 -3.7 phosphoserine phosphatase SerB compare
ABZR87_RS02640 -4.2 -11.9 diaminopimelate decarboxylase compare
ABZR87_RS14890 -4.2 -1.2 preprotein translocase subunit SecG compare
ABZR87_RS00200 -4.0 -3.9 phosphoadenylyl-sulfate reductase compare
ABZR87_RS07060 -3.9 -15.2 RNA polymerase factor sigma-54 compare
ABZR87_RS00185 -3.9 -6.0 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS07360 -3.8 -11.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09635 -3.8 -2.6 ribosome small subunit-dependent GTPase A compare
ABZR87_RS02145 -3.8 -3.0 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS11440 -3.7 -10.0 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS13645 -3.7 -1.5 hypothetical protein compare
ABZR87_RS11065 -3.7 -8.3 nitrogen regulation protein NR(II) compare
ABZR87_RS05200 -3.6 -14.4 homoserine O-acetyltransferase compare
ABZR87_RS04865 -3.6 -7.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS14505 -3.6 -4.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS14530 -3.6 -9.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS03420 -3.5 -1.0 type II secretion system minor pseudopilin GspI compare
ABZR87_RS00835 -3.4 -8.5 argininosuccinate synthase compare
ABZR87_RS07380 -3.4 -15.0 FAD/FMN-binding oxidoreductase compare
ABZR87_RS00195 -3.4 -6.0 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS14490 -3.4 -9.4 tryptophan synthase subunit alpha compare
ABZR87_RS14955 -3.4 -9.6 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00285 -3.4 -3.2 acetylornithine transaminase compare
ABZR87_RS09445 -3.3 -12.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02160 -3.3 -5.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00190 -3.3 -10.2 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS16140 -3.3 -12.0 phosphoenolpyruvate carboxylase compare
ABZR87_RS12790 -3.2 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS01675 -3.2 -3.1 carbohydrate kinase family protein compare
ABZR87_RS02570 -3.1 -18.0 glutamate synthase-related protein compare
ABZR87_RS11070 -3.1 -7.2 nitrogen regulation protein NR(I) compare
ABZR87_RS02565 -3.1 -6.5 glutamate synthase subunit beta compare
ABZR87_RS22970 -3.1 -10.4 cystathionine gamma-synthase family protein compare
ABZR87_RS02155 -3.1 -5.0 anthranilate phosphoribosyltransferase compare
ABZR87_RS00205 -3.0 -2.2 DUF934 domain-containing protein compare
ABZR87_RS14500 -3.0 -10.2 tryptophan synthase subunit beta compare
ABZR87_RS02140 -3.0 -13.4 anthranilate synthase component I compare
ABZR87_RS14535 -2.9 -4.2 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS05170 -2.9 -6.1 acetylglutamate kinase compare
ABZR87_RS02595 -2.9 -8.2 shikimate kinase compare
ABZR87_RS01110 -2.8 -8.4 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS13790 -2.8 -9.7 chorismate synthase compare
ABZR87_RS16180 -2.8 -6.0 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS01245 -2.8 -8.2 Dps family protein compare
ABZR87_RS06645 -2.6 -2.4 TlpA disulfide reductase family protein compare
ABZR87_RS00210 -2.6 -7.2 nitrite/sulfite reductase compare
ABZR87_RS05100 -2.6 -4.9 RNA polymerase-binding protein DksA compare
ABZR87_RS00220 -2.6 -7.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS10085 -2.6 -2.1 Rne/Rng family ribonuclease compare
ABZR87_RS00875 -2.5 -4.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS07665 -2.5 -8.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS01645 -2.5 -2.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS16170 -2.5 -3.1 argininosuccinate lyase compare
ABZR87_RS13300 -2.5 -8.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS10980 -2.4 -2.0 tRNA-Leu compare
ABZR87_RS07635 -2.4 -3.9 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS05590 -2.4 -2.3 orotate phosphoribosyltransferase compare
ABZR87_RS09450 -2.4 -5.2 prephenate dehydratase compare
ABZR87_RS01810 -2.4 -2.8 glutamate 5-kinase compare
ABZR87_RS01605 -2.4 -6.6 shikimate dehydrogenase compare
ABZR87_RS22915 -2.4 -9.3 glucose-6-phosphate dehydrogenase compare
ABZR87_RS01225 -2.4 -4.1 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS10780 -2.4 -5.4 PD-(D/E)XK nuclease family protein compare
ABZR87_RS09935 -2.3 -4.8 amino acid aminotransferase compare
ABZR87_RS11170 -2.2 -1.4 FixH family protein compare
ABZR87_RS12345 -2.2 -1.2 dethiobiotin synthase compare
ABZR87_RS09465 -2.1 -6.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02590 -2.1 -6.5 3-dehydroquinate synthase compare
ABZR87_RS04785 -2.1 -7.7 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS04125 -2.0 -5.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08630 -2.0 -3.6 dihydroorotase compare
ABZR87_RS00435 -2.0 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14115 -1.9 -4.8 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS12795 -1.9 -5.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS01420 -1.8 -2.7 outer membrane protein assembly factor BamE compare
ABZR87_RS10620 -1.8 -2.3 serine O-acetyltransferase compare
ABZR87_RS11990 -1.8 -2.1 hypothetical protein compare
ABZR87_RS16960 -1.8 -4.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS09615 -1.8 -1.0 50S ribosomal protein L19 compare
ABZR87_RS06910 -1.8 -3.1 ANTAR domain-containing protein compare
ABZR87_RS13010 -1.7 -1.3 GPW/gp25 family protein compare
ABZR87_RS23225 -1.7 -6.2 sugar ABC transporter permease compare
ABZR87_RS08700 -1.7 -7.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS12785 -1.6 -4.8 endopeptidase La compare
ABZR87_RS05060 -1.6 -3.9 DUF484 family protein compare
ABZR87_RS00275 -1.6 -4.6 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS18870 -1.5 -7.7 nitrite reductase large subunit NirB compare
ABZR87_RS13145 -1.5 -3.9 hypothetical protein compare
ABZR87_RS15440 -1.5 -2.6 ribonuclease G compare
ABZR87_RS21795 -1.5 -4.9 NUDIX domain-containing protein compare
ABZR87_RS05350 -1.5 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS23215 -1.5 -4.3 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS09030 -1.5 -4.7 NAD(P)-dependent oxidoreductase compare
ABZR87_RS01555 -1.4 -1.5 barstar family protein compare
ABZR87_RS08070 -1.4 -1.4 pyruvate kinase compare
ABZR87_RS10610 -1.4 -1.5 inositol monophosphatase family protein compare
ABZR87_RS18865 -1.4 -7.4 MFS transporter compare
ABZR87_RS02480 -1.4 -2.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS08625 -1.4 -1.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS22910 -1.4 -1.0 6-phosphogluconolactonase compare
ABZR87_RS02850 -1.4 -2.8 elongation factor Tu compare
ABZR87_RS22300 -1.4 -0.9 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS13475 -1.3 -4.4 PAS domain S-box protein compare
ABZR87_RS23220 -1.3 -4.6 xylose ABC transporter ATP-binding protein compare
ABZR87_RS13290 -1.3 -2.8 3-ketoacyl-ACP reductase compare
ABZR87_RS17865 -1.3 -1.4 cation:proton antiporter compare
ABZR87_RS00215 -1.3 -3.1 sulfite exporter TauE/SafE family protein compare
ABZR87_RS07470 -1.3 -5.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07620 -1.2 -3.0 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS15705 -1.2 -2.4 UvrD-helicase domain-containing protein compare
ABZR87_RS20985 -1.2 -3.3 hypothetical protein compare
ABZR87_RS15810 -1.2 -3.4 hypothetical protein compare
ABZR87_RS19095 -1.2 -3.4 gluconate:H+ symporter compare
ABZR87_RS03180 -1.2 -1.9 hypothetical protein compare
ABZR87_RS10165 -1.2 -5.8 RNA polymerase sigma factor RpoE compare
ABZR87_RS06880 -1.1 -2.6 VOC family protein compare
ABZR87_RS18165 -1.1 -1.5 hypothetical protein compare
ABZR87_RS06715 -1.1 -2.2 PTS sugar transporter subunit IIA compare
ABZR87_RS07320 -1.1 -4.1 gluconokinase compare
ABZR87_RS10785 -1.1 -3.3 exodeoxyribonuclease V subunit beta compare
ABZR87_RS09515 -1.1 -1.0 cysteine synthase CysM compare
ABZR87_RS07625 -1.1 -1.4 Holliday junction branch migration protein RuvA compare
ABZR87_RS15680 -1.1 -5.3 DNA polymerase I compare
ABZR87_RS03705 -1.1 -0.5 DUF2892 domain-containing protein compare
ABZR87_RS08695 -1.1 -5.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS19970 -1.1 -2.2 hypothetical protein compare
ABZR87_RS13110 -1.1 -3.3 hypothetical protein compare
ABZR87_RS10510 -1.1 -3.0 DUF4166 domain-containing protein compare
ABZR87_RS22690 -1.1 -2.0 XRE family transcriptional regulator compare
ABZR87_RS06875 -1.1 -4.2 DNA-binding protein YbiB compare
ABZR87_RS17145 -1.0 -6.9 AMP nucleosidase compare
ABZR87_RS01760 -1.0 -0.8 PP0621 family protein compare
ABZR87_RS11495 -1.0 -1.2 NADPH-dependent FMN reductase compare
ABZR87_RS02575 -1.0 -4.0 transposase compare
ABZR87_RS14235 -1.0 -4.5 formyltetrahydrofolate deformylase compare
ABZR87_RS17595 -1.0 -1.5 hypothetical protein compare
ABZR87_RS16250 -1.0 -2.2 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS06845 -0.9 -4.7 heme o synthase compare
ABZR87_RS04975 -0.9 -1.2 peptide deformylase compare
ABZR87_RS14745 -0.9 -1.1 urease subunit gamma compare
ABZR87_RS05025 -0.9 -1.0 rod shape-determining protein MreC compare
ABZR87_RS18875 -0.9 -2.3 nitrite reductase small subunit NirD compare
ABZR87_RS08970 -0.9 -3.3 protein TolQ compare
ABZR87_RS21585 -0.9 -1.9 multidrug efflux SMR transporter compare
ABZR87_RS22585 -0.9 -1.2 methyl-accepting chemotaxis protein compare
ABZR87_RS20785 -0.9 -0.9 DUF2783 domain-containing protein compare
ABZR87_RS15605 -0.8 -1.8 hypothetical protein compare
ABZR87_RS01765 -0.8 -1.7 cytochrome c biogenesis protein CcsA compare
ABZR87_RS00655 -0.8 -2.4 HutD family protein compare
ABZR87_RS08715 -0.8 -5.9 ATP-grasp domain-containing protein compare
ABZR87_RS08980 -0.8 -2.0 cell envelope integrity protein TolA compare
ABZR87_RS10865 -0.8 -3.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR87_RS19675 -0.8 -0.9 cold-shock protein compare
ABZR87_RS01685 -0.8 -1.7 histone H1-like DNA-binding protein compare
ABZR87_RS01035 -0.8 -2.2 histidine utilization repressor compare
ABZR87_RS13495 -0.8 -2.6 exodeoxyribonuclease III compare
ABZR87_RS01980 -0.8 -1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS13390 -0.8 -2.5 hypothetical protein compare
ABZR87_RS10525 -0.8 -1.1 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS21270 -0.8 -2.5 SRPBCC family protein compare
ABZR87_RS19035 -0.8 -2.2 response regulator compare
ABZR87_RS23230 -0.8 -3.3 NAD(P)-dependent oxidoreductase compare
ABZR87_RS08915 -0.8 -1.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS17310 -0.8 -3.5 PadR family transcriptional regulator compare
ABZR87_RS11715 -0.8 -1.4 glutathione ABC transporter permease GsiC compare
ABZR87_RS05405 -0.7 -3.8 hypothetical protein compare
ABZR87_RS14440 -0.7 -3.2 phasin family protein compare
ABZR87_RS10930 -0.7 -0.8 outer membrane protein assembly factor BamB compare
ABZR87_RS08985 -0.7 -3.8 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS10600 -0.7 -1.5 MOSC domain-containing protein compare
ABZR87_RS23210 -0.7 -4.0 carbohydrate porin compare
ABZR87_RS19105 -0.7 -2.0 amidohydrolase family protein compare
ABZR87_RS21285 -0.7 -1.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS04500 -0.7 -1.0 hypothetical protein compare
ABZR87_RS13285 -0.7 -4.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS16755 -0.7 -2.9 HD-GYP domain-containing protein compare
ABZR87_RS10395 -0.7 -3.0 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS11000 -0.7 -3.3 transaldolase compare
ABZR87_RS12300 -0.7 -2.0 muconolactone Delta-isomerase compare
ABZR87_RS13050 -0.7 -0.7 GpE family phage tail protein compare
ABZR87_RS08875 -0.7 -1.7 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABZR87_RS12495 -0.7 -2.9 NRDE family protein compare
ABZR87_RS17845 -0.7 -1.3 Crp/Fnr family transcriptional regulator compare
ABZR87_RS20955 -0.7 -0.9 MarR family transcriptional regulator compare
ABZR87_RS02550 -0.7 -2.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS01615 -0.7 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS14680 -0.7 -0.7 SDR family oxidoreductase compare
ABZR87_RS07050 -0.7 -0.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08025 -0.7 -2.4 DUF2946 family protein compare
ABZR87_RS06400 -0.7 -3.7 response regulator transcription factor compare
ABZR87_RS11015 -0.7 -2.4 amino-acid N-acetyltransferase compare
ABZR87_RS10350 -0.7 -1.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS06385 -0.7 -4.3 CHASE3 domain-containing protein compare
ABZR87_RS09755 -0.7 -2.3 chromate transporter compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Sodium nitrite in Ralstonia sp. UNC404CL21Col

For nitrogen source Sodium nitrite across organisms