Experiment set11IT014 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Sinomenine 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -4.0 -4.7 SirA-like protein compare
Psyr_4340 -3.7 -9.2 phosphomethylpyrimidine kinase, putative compare
Psyr_0951 -3.6 -4.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4683 -3.4 -4.6 dethiobiotin synthase compare
Psyr_4740 -3.4 -6.7 thiazole-phosphate synthase compare
Psyr_1613 -3.2 -5.3 septum site-determining protein MinC compare
Psyr_4627 -3.2 -3.7 dimethyladenosine transferase compare
Psyr_0454 -2.9 -5.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4684 -2.9 -3.8 biotin synthesis protein BioC compare
Psyr_3008 -2.9 -8.4 Undecaprenyl-diphosphatase compare
Psyr_4341 -2.8 -8.6 thiamine-phosphate diphosphorylase compare
Psyr_4687 -2.7 -7.8 biotin synthase compare
Psyr_1663 -2.7 -3.6 phosphoribosylanthranilate isomerase compare
Psyr_1556 -2.6 -3.5 hypothetical protein compare
Psyr_4686 -2.6 -6.8 8-amino-7-oxononanoate synthase compare
Psyr_4091 -2.6 -6.0 8-oxo-dGTPase compare
Psyr_4991 -2.5 -3.4 hypothetical protein compare
Psyr_4203 -2.5 -3.2 SsrA-binding protein compare
Psyr_0849 -2.4 -10.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0475 -2.3 -2.7 Protein of unknown function YGGT compare
Psyr_4580 -2.2 -3.3 anthranilate phosphoribosyltransferase compare
Psyr_0917 -2.0 -10.6 ABC-2 compare
Psyr_3013 -1.9 -3.0 magnesium chelatase subunit ChlD compare
Psyr_0574 -1.9 -5.4 protease FtsH subunit HflK compare
Psyr_4581 -1.9 -2.1 anthranilate synthase, component II compare
Psyr_2642 -1.8 -4.7 hypothetical protein compare
Psyr_0575 -1.7 -3.8 protease FtsH subunit HflC compare
Psyr_1408 -1.6 -3.7 Holliday junction endonuclease RuvC compare
Psyr_0918 -1.6 -9.5 ABC transporter compare
Psyr_3193 -1.5 -2.7 Transcription factor jumonji, jmjC compare
Psyr_1930 -1.5 -2.8 hypothetical protein compare
Psyr_3854 -1.4 -1.8 OmpA/MotB compare
Psyr_0565 -1.4 -4.7 Protein of unknown function UPF0126 compare
Psyr_5132 -1.4 -3.3 Glucose-inhibited division protein A subfamily compare
Psyr_2471 -1.4 -2.7 hydroxymethylglutaryl-CoA lyase compare
Psyr_0259 -1.4 -3.0 Osmolarity sensor protein envZ compare
Psyr_1250 -1.4 -2.8 conserved hypothetical protein compare
Psyr_1373 -1.3 -2.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0282 -1.3 -3.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3152 -1.3 -1.0 hypothetical protein compare
Psyr_0826 -1.3 -5.8 glucose-6-phosphate isomerase compare
Psyr_2347 -1.3 -2.3 hypothetical protein compare
Psyr_1907 -1.3 -3.2 GTP cyclohydrolase I compare
Psyr_4822 -1.3 -2.7 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_2428 -1.3 -2.9 GCN5-related N-acetyltransferase compare
Psyr_1748 -1.2 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0549 -1.2 -2.5 Metallophosphoesterase compare
Psyr_4089 -1.2 -4.8 PAS compare
Psyr_4051 -1.2 -2.9 transcriptional regulator, ArsR family compare
Psyr_4418 -1.2 -1.8 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_4754 -1.2 -1.9 16S rRNA m(2)G-966 methyltransferase compare
Psyr_3202 -1.2 -1.9 NADH dehydrogenase subunit G compare
Psyr_5135 -1.2 -2.1 Protein of unknown function DUF37 compare
Psyr_3450 -1.2 -4.3 Hpt compare
Psyr_0838 -1.1 -2.0 Rieske [2Fe-2S] region compare
Psyr_3581 -1.1 -4.8 ribosomal large subunit pseudouridine synthase B compare
Psyr_0281 -1.1 -2.9 ABC transporter compare
Psyr_4884 -1.1 -5.1 Rhodanese-like protein compare
Psyr_2769 -1.1 -3.9 conserved hypothetical protein compare
Psyr_0487 -1.1 -2.2 glutathione synthase compare
Psyr_2848 -1.1 -3.4 hypothetical protein compare
Psyr_1751 -1.1 -3.3 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1555 -1.1 -3.0 Cobyrinic acid a,c-diamide synthase compare
Psyr_5133 -1.1 -3.2 tRNA modification GTPase trmE compare
Psyr_3287 -1.1 -1.9 DNA topoisomerase I compare
Psyr_0034 -1.1 -1.0 tryptophan synthase, beta chain compare
Psyr_1094 -1.1 -2.5 cold-shock DNA-binding protein family compare
Psyr_1975 -1.0 -1.5 Integrase, catalytic region compare
Psyr_0571 -1.0 -2.9 tRNA isopentenyltransferase compare
Psyr_0941 -1.0 -4.8 Conserved hypothetical protein 92 compare
Psyr_4136 -1.0 -2.0 BolA-like protein compare
Psyr_0529 -1.0 -4.0 Glycosyl transferase, group 1 compare
Psyr_3808 -0.9 -1.3 hypothetical protein compare
Psyr_2345 -0.9 -3.5 ea59 protein compare
Psyr_1227 -0.9 -2.3 Queuosine biosynthesis protein compare
Psyr_3952 -0.9 -3.3 conserved hypothetical protein compare
Psyr_1747 -0.9 -3.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1667 -0.9 -3.9 Colicin V production protein compare
Psyr_1935 -0.9 -3.3 Protein of unknown function DUF796 compare
Psyr_1410 -0.9 -2.7 Holliday junction DNA helicase RuvB compare
Psyr_2488 -0.9 -2.2 hypothetical protein compare
Psyr_4093 -0.9 -3.8 glutamate N-acetyltransferase compare
Psyr_1449 -0.9 -3.1 hypothetical protein compare
Psyr_0318 -0.9 -3.1 cell division protein ZapA compare
Psyr_3554 -0.9 -1.7 Carbon storage regulator compare
Psyr_2641 -0.9 -2.6 hypothetical protein compare
Psyr_2752 -0.9 -1.2 conserved hypothetical protein compare
Psyr_2069 -0.9 -2.1 conserved hypothetical protein compare
Psyr_2346 -0.9 -2.6 conserved hypothetical protein compare
Psyr_3552 -0.9 -1.8 Divalent cation transporter compare
Psyr_4519 -0.9 -5.3 General substrate transporter:Major facilitator superfamily compare
Psyr_3840 -0.8 -2.8 conserved hypothetical protein compare
Psyr_RNA61 -0.8 -2.7 tRNA-Gly compare
Psyr_0014 -0.8 -2.7 lipid A biosynthesis acyltransferase compare
Psyr_1460 -0.8 -2.5 hypothetical protein compare
Psyr_2854 -0.8 -3.0 conserved hypothetical protein compare
Psyr_3164 -0.8 -5.2 Protein of unknown function UPF0005 compare
Psyr_4566 -0.8 -4.9 Peptidase M23B compare
Psyr_0215 -0.8 -5.4 Exodeoxyribonuclease III xth compare
Psyr_0579 -0.8 -5.8 RNAse R compare
Psyr_0033 -0.8 -0.5 tryptophan synthase, alpha chain compare
Psyr_2143 -0.8 -1.3 delta1-piperideine 2-carboxylate reductase compare
Psyr_0541 -0.8 -2.2 Small multidrug resistance protein compare
Psyr_1749 -0.8 -4.1 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_3805 -0.8 -1.9 hypothetical protein compare
Psyr_2980 -0.8 -2.2 UDP-glucose pyrophosphorylase compare
Psyr_4593 -0.8 -2.2 sigma factor domain protein compare
Psyr_4062 -0.8 -2.5 Pyridoxamine 5'-phosphate oxidase-related protein compare
Psyr_0148 -0.8 -2.5 hypothetical protein compare
Psyr_3806 -0.8 -3.0 hypothetical protein compare
Psyr_3090 -0.8 -2.1 hypothetical protein compare
Psyr_3034 -0.8 -1.9 conserved hypothetical protein compare
Psyr_0580 -0.7 -2.3 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_3807 -0.7 -3.1 hypothetical protein compare
Psyr_1528 -0.7 -1.9 Arc-like DNA binding protein compare
Psyr_0531 -0.7 -1.2 LmbE-like protein compare
Psyr_2778 -0.7 -1.8 Phage minor tail protein L compare
Psyr_3728 -0.7 -3.5 hypothetical protein compare
Psyr_4622 -0.7 -3.1 Nucleotidyl transferase compare
Psyr_2842 -0.7 -3.8 hypothetical protein compare
Psyr_1270 -0.7 -1.2 conserved hypothetical protein compare
Psyr_3290 -0.7 -1.5 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_0184 -0.7 -1.9 Protein of unknown function DUF484 compare
Psyr_3842 -0.7 -3.6 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_0303 -0.7 -2.2 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_2770 -0.7 -3.7 tail fiber domain protein compare
Psyr_4362 -0.7 -1.8 Rare lipoprotein A compare
Psyr_2275 -0.7 -2.2 glutamate synthase (NADPH) GltB3 subunit compare
Psyr_2160 -0.7 -1.4 cold-shock DNA-binding protein family compare
Psyr_1419 -0.7 -1.7 preQ(0) biosynthesis protein QueC compare
Psyr_2062 -0.7 -2.1 DoxD-like family protein compare
Psyr_2797 -0.7 -3.2 hypothetical protein compare
Psyr_1268 -0.7 -3.5 extracellular solute-binding protein, family 3:SLT compare
Psyr_2462 -0.7 -2.1 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_2375 -0.7 -2.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3179 -0.7 -1.5 DNA translocase FtsK compare
Psyr_3954 -0.7 -2.5 GTP-binding protein LepA compare
Psyr_5065 -0.7 -4.1 ATP-dependent DNA helicase UvrD compare
Psyr_0919 -0.7 -4.6 Chromosome segregation ATPase-like protein compare
Psyr_3020 -0.6 -1.5 precorrin-4 C11-methyltransferase compare
Psyr_1350 -0.6 -1.9 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4351 -0.6 -2.4 conserved domain protein compare
Psyr_3432 -0.6 -1.4 MotA/TolQ/ExbB proton channel compare
Psyr_1371 -0.6 -3.3 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_1944 -0.6 -2.0 Thioesterase compare
Psyr_2739 -0.6 -2.5 ThiJ/PfpI compare
Psyr_1919 -0.6 -2.4 hypothetical protein compare
Psyr_4476 -0.6 -2.8 dTDP-4-dehydrorhamnose reductase compare
Psyr_0493 -0.6 -1.1 CheW-like protein compare
Psyr_2823 -0.6 -0.9 hypothetical protein compare
Psyr_4019 -0.6 -1.8 H-NS family protein MvaT compare
Psyr_3947 -0.6 -1.1 Methyltransferase, putative compare
Psyr_4155 -0.6 -1.2 Protein of unknown function DUF615 compare
Psyr_1212 -0.6 -1.6 type III secretion protein HrpO compare
Psyr_0492 -0.6 -4.5 Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt compare
Psyr_4451 -0.6 -2.1 UreE urease accessory, N-terminal:UreE urease accessory, C-terminal compare
Psyr_2137 -0.6 -1.3 molybdopterin molybdochelatase compare
Psyr_0817 -0.6 -2.6 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_4658 -0.6 -1.3 CDS compare
Psyr_2039 -0.6 -1.4 Fimbrial protein compare
Psyr_2029 -0.6 -2.4 Protein of unknown function UPF0118 compare
Psyr_4118 -0.6 -3.2 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_4361 -0.6 -1.5 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_0920 -0.6 -5.0 Glycosyl transferase, group 1 compare
Psyr_3665 -0.6 -2.0 conserved hypothetical protein compare
Psyr_1418 -0.6 -1.7 Radical SAM compare
Psyr_3213 -0.6 -1.5 Propeptide, PepSY amd peptidase M4 compare
Psyr_0524 -0.6 -1.8 Lipopolysaccharide kinase compare
Psyr_2076 -0.6 -1.7 UspA compare
Psyr_3466 -0.6 -1.6 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_2243 -0.6 -2.0 Endoribonuclease L-PSP compare
Psyr_2669 -0.6 -1.7 Aminoglycoside phosphotransferase compare
Psyr_1931 -0.6 -2.5 hypothetical protein compare
Psyr_3429 -0.6 -1.6 CheW-like protein compare
Psyr_1404 -0.6 -3.2 Ferritin and Dps compare
Psyr_2320 -0.6 -3.0 YD repeat protein compare
Psyr_1910 -0.6 -2.0 VacJ-like lipoprotein compare
Psyr_0916 -0.6 -3.9 GDP-mannose 4,6-dehydratase compare
Psyr_5130 -0.6 -3.5 chromosome segregation ATPase compare
Psyr_1947 -0.6 -1.3 MbtH-like protein compare
Psyr_1455 -0.6 -2.1 conserved hypothetical protein compare
Psyr_2838 -0.6 -1.5 conserved hypothetical protein compare
Psyr_4609 -0.6 -4.1 anthranilate synthase, component I compare
Psyr_2380 -0.6 -2.0 hypothetical protein compare
Psyr_4860 -0.6 -0.9 Integrase, catalytic region compare
Psyr_0319 -0.6 -3.1 conserved hypothetical protein compare
Psyr_3604 -0.6 -1.5 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_3958 -0.6 -3.6 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_4788 -0.6 -1.0 lipoprotein, putative compare
Psyr_1791 -0.6 -1.6 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_1553 -0.6 -2.8 hypothetical protein compare
Psyr_0791 -0.6 -0.5 MOSC compare
Psyr_1864 -0.6 -1.8 spermidine synthase compare
Psyr_2617 -0.5 -1.1 Secretion protein HlyD compare
Psyr_2973 -0.5 -1.2 Glyoxalase I compare
Psyr_3522 -0.5 -2.5 L-serine ammonia-lyase compare
Psyr_0923 -0.5 -2.2 hypothetical protein compare
Psyr_4460 -0.5 -1.0 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_1024 -0.5 -1.7 Flavodoxin/nitric oxide synthase compare
Psyr_0081 -0.5 -1.2 ABC transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Sinomenine across organisms