Experiment set11IT013 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrate 5mM

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02160 -7.8 -5.4 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00195 -7.6 -5.1 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS14505 -7.5 -5.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS02565 -7.4 -5.1 glutamate synthase subunit beta compare
ABZR87_RS11815 -6.9 -11.6 [protein-PII] uridylyltransferase compare
ABZR87_RS14950 -6.9 -3.8 acetolactate synthase small subunit compare
ABZR87_RS09465 -6.9 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS11070 -6.7 -10.2 nitrogen regulation protein NR(I) compare
ABZR87_RS22970 -6.3 -15.1 cystathionine gamma-synthase family protein compare
ABZR87_RS14540 -6.3 -8.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14530 -6.2 -10.4 3-isopropylmalate dehydrogenase compare
ABZR87_RS11065 -6.2 -11.6 nitrogen regulation protein NR(II) compare
ABZR87_RS13790 -6.2 -10.4 chorismate synthase compare
ABZR87_RS13250 -6.1 -2.9 phosphoserine phosphatase SerB compare
ABZR87_RS22920 -6.0 -4.2 phosphogluconate dehydratase compare
ABZR87_RS02570 -6.0 -29.4 glutamate synthase-related protein compare
ABZR87_RS14535 -5.9 -8.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS10070 -5.8 -2.9 gephyrin-like molybdotransferase Glp compare
ABZR87_RS07380 -5.8 -14.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02640 -5.6 -13.9 diaminopimelate decarboxylase compare
ABZR87_RS07360 -5.5 -15.9 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS16140 -5.5 -15.1 phosphoenolpyruvate carboxylase compare
ABZR87_RS02595 -5.4 -10.7 shikimate kinase compare
ABZR87_RS02590 -5.4 -12.9 3-dehydroquinate synthase compare
ABZR87_RS00285 -5.3 -3.6 acetylornithine transaminase compare
ABZR87_RS00210 -5.2 -12.3 nitrite/sulfite reductase compare
ABZR87_RS00185 -5.2 -5.1 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS02155 -5.2 -8.5 anthranilate phosphoribosyltransferase compare
ABZR87_RS07060 -5.2 -17.3 RNA polymerase factor sigma-54 compare
ABZR87_RS07050 -5.1 -2.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS04865 -5.1 -6.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00190 -4.9 -11.1 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS01225 -4.8 -4.5 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS14500 -4.8 -12.6 tryptophan synthase subunit beta compare
ABZR87_RS00835 -4.8 -7.3 argininosuccinate synthase compare
ABZR87_RS14955 -4.6 -4.5 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS05200 -4.6 -13.6 homoserine O-acetyltransferase compare
ABZR87_RS22915 -4.5 -12.1 glucose-6-phosphate dehydrogenase compare
ABZR87_RS13175 -4.5 -3.0 tRNA-Leu compare
ABZR87_RS05170 -4.5 -3.1 acetylglutamate kinase compare
ABZR87_RS02140 -4.4 -15.3 anthranilate synthase component I compare
ABZR87_RS14490 -4.4 -9.7 tryptophan synthase subunit alpha compare
ABZR87_RS09450 -4.3 -6.3 prephenate dehydratase compare
ABZR87_RS06645 -4.3 -2.7 TlpA disulfide reductase family protein compare
ABZR87_RS06910 -4.2 -4.9 ANTAR domain-containing protein compare
ABZR87_RS00970 -4.1 -2.2 molecular chaperone DnaJ compare
ABZR87_RS08630 -4.1 -6.9 dihydroorotase compare
ABZR87_RS16170 -4.0 -5.2 argininosuccinate lyase compare
ABZR87_RS13300 -4.0 -10.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS00220 -3.9 -10.4 CysB family HTH-type transcriptional regulator compare
ABZR87_RS01110 -3.9 -8.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS09445 -3.8 -10.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS16185 -3.8 -2.0 dCTP deaminase compare
ABZR87_RS07665 -3.8 -10.1 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS16165 -3.7 -1.3 anti-sigma factor compare
ABZR87_RS11470 -3.6 -3.9 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS00200 -3.6 -3.5 phosphoadenylyl-sulfate reductase compare
ABZR87_RS18875 -3.5 -2.2 nitrite reductase small subunit NirD compare
ABZR87_RS00205 -3.4 -2.6 DUF934 domain-containing protein compare
ABZR87_RS05100 -3.4 -4.9 RNA polymerase-binding protein DksA compare
ABZR87_RS09935 -3.4 -2.4 amino acid aminotransferase compare
ABZR87_RS11460 -3.4 -3.0 gephyrin-like molybdotransferase Glp compare
ABZR87_RS08695 -3.3 -15.0 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS00875 -3.3 -5.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS12790 -3.3 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS01810 -3.2 -2.8 glutamate 5-kinase compare
ABZR87_RS11440 -3.2 -6.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS08015 -3.1 -8.3 cyclic pyranopterin monophosphate synthase MoaC compare
ABZR87_RS10075 -3.1 -5.6 molybdenum cofactor guanylyltransferase MobA conserved
ABZR87_RS07625 -3.1 -3.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS06495 -3.0 -3.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS18885 -3.0 -8.4 nitrate reductase conserved
ABZR87_RS10080 -3.0 -6.0 GTP 3',8-cyclase MoaA compare
ABZR87_RS09650 -3.0 -5.2 molybdopterin adenylyltransferase compare
ABZR87_RS01645 -2.9 -4.8 type II 3-dehydroquinate dehydratase compare
ABZR87_RS12785 -2.9 -7.8 endopeptidase La compare
ABZR87_RS09030 -2.8 -4.0 NAD(P)-dependent oxidoreductase compare
ABZR87_RS16960 -2.8 -6.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS19485 -2.7 -2.0 H-NS histone family protein compare
ABZR87_RS22910 -2.7 -2.0 6-phosphogluconolactonase compare
ABZR87_RS05590 -2.6 -1.8 orotate phosphoribosyltransferase compare
ABZR87_RS12795 -2.6 -6.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS18870 -2.6 -7.6 nitrite reductase large subunit NirB compare
ABZR87_RS04640 -2.6 -2.3 hypothetical protein compare
ABZR87_RS16180 -2.6 -5.7 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS00275 -2.5 -6.5 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS13290 -2.5 -3.1 3-ketoacyl-ACP reductase compare
ABZR87_RS18880 -2.4 -6.4 FAD-dependent oxidoreductase conserved
ABZR87_RS13400 -2.4 -1.0 hypothetical protein compare
ABZR87_RS23225 -2.4 -4.1 sugar ABC transporter permease compare
ABZR87_RS10785 -2.2 -4.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS06770 -2.2 -3.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS04785 -2.2 -6.5 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS00435 -2.2 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS18865 -2.2 -7.9 MFS transporter compare
ABZR87_RS21285 -2.2 -2.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01605 -2.2 -5.4 shikimate dehydrogenase compare
ABZR87_RS05025 -2.1 -2.1 rod shape-determining protein MreC compare
ABZR87_RS02145 -2.1 -1.2 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS23215 -2.1 -4.9 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS00820 -2.0 -2.0 YajQ family cyclic di-GMP-binding protein compare
ABZR87_RS13705 -2.0 -1.3 integration host factor subunit alpha compare
ABZR87_RS23220 -2.0 -6.0 xylose ABC transporter ATP-binding protein compare
ABZR87_RS00215 -2.0 -3.7 sulfite exporter TauE/SafE family protein compare
ABZR87_RS13475 -2.0 -5.9 PAS domain S-box protein compare
ABZR87_RS11170 -1.9 -1.1 FixH family protein compare
ABZR87_RS10980 -1.9 -1.5 tRNA-Leu compare
ABZR87_RS09875 -1.9 -1.9 GNAT family protein compare
ABZR87_RS00745 -1.9 -1.5 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS09460 -1.8 -3.3 prephenate dehydrogenase compare
ABZR87_RS20450 -1.8 -1.3 HAD family phosphatase compare
ABZR87_RS01675 -1.8 -2.2 carbohydrate kinase family protein compare
ABZR87_RS02480 -1.8 -3.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS07635 -1.7 -2.4 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08700 -1.7 -7.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS18165 -1.7 -1.2 hypothetical protein compare
ABZR87_RS05350 -1.7 -3.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS01615 -1.7 -1.9 RNB domain-containing ribonuclease compare
ABZR87_RS14235 -1.6 -5.0 formyltetrahydrofolate deformylase compare
ABZR87_RS11010 -1.6 -1.7 oxidative damage protection protein compare
ABZR87_RS07320 -1.6 -3.7 gluconokinase compare
ABZR87_RS20440 -1.6 -0.9 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS12345 -1.6 -0.9 dethiobiotin synthase compare
ABZR87_RS08640 -1.5 -2.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS11245 -1.5 -3.8 translational GTPase TypA compare
ABZR87_RS07645 -1.5 -3.9 Fis family transcriptional regulator compare
ABZR87_RS10780 -1.5 -3.6 PD-(D/E)XK nuclease family protein compare
ABZR87_RS10240 -1.5 -1.8 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS14745 -1.5 -1.3 urease subunit gamma compare
ABZR87_RS22645 -1.5 -2.0 hypothetical protein compare
ABZR87_RS06595 -1.5 -1.7 DUF2917 domain-containing protein compare
ABZR87_RS23230 -1.4 -5.1 NAD(P)-dependent oxidoreductase compare
ABZR87_RS23095 -1.4 -0.9 MarR family transcriptional regulator compare
ABZR87_RS15815 -1.4 -1.7 ABC transporter substrate-binding protein compare
ABZR87_RS08980 -1.4 -2.4 cell envelope integrity protein TolA compare
ABZR87_RS11125 -1.4 -3.5 cell division protein ZapE compare
ABZR87_RS04125 -1.4 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS03705 -1.4 -1.1 DUF2892 domain-containing protein compare
ABZR87_RS02575 -1.4 -4.7 transposase compare
ABZR87_RS15440 -1.4 -2.6 ribonuclease G compare
ABZR87_RS22690 -1.4 -1.6 XRE family transcriptional regulator compare
ABZR87_RS12800 -1.3 -4.0 trigger factor compare
ABZR87_RS01780 -1.3 -0.6 MarC family protein compare
ABZR87_RS16250 -1.3 -2.7 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS02485 -1.3 -0.7 MarC family protein compare
ABZR87_RS08645 -1.3 -0.8 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS23210 -1.3 -5.6 carbohydrate porin compare
ABZR87_RS08105 -1.2 -4.4 molybdopterin-guanine dinucleotide biosynthesis protein B compare
ABZR87_RS08970 -1.2 -4.6 protein TolQ compare
ABZR87_RS07620 -1.2 -1.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS08985 -1.2 -5.8 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS07295 -1.2 -2.6 YeeE/YedE family protein compare
ABZR87_RS02150 -1.2 -1.5 lysozyme inhibitor LprI family protein compare
ABZR87_RS06715 -1.2 -2.2 PTS sugar transporter subunit IIA compare
ABZR87_RS07035 -1.2 -5.1 RNase adapter RapZ compare
ABZR87_RS00795 -1.2 -2.5 site-specific tyrosine recombinase XerD compare
ABZR87_RS19675 -1.2 -1.0 cold-shock protein compare
ABZR87_RS11000 -1.2 -4.4 transaldolase compare
ABZR87_RS13285 -1.2 -5.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS07675 -1.1 -5.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS10620 -1.1 -1.3 serine O-acetyltransferase compare
ABZR87_RS11525 -1.1 -1.2 molybdopterin-binding protein compare
ABZR87_RS10165 -1.1 -5.7 RNA polymerase sigma factor RpoE compare
ABZR87_RS01420 -1.1 -1.8 outer membrane protein assembly factor BamE compare
ABZR87_RS18190 -1.1 -1.8 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS05015 -1.1 -3.2 penicillin-binding protein 2 compare
ABZR87_RS05520 -1.1 -1.9 hypothetical protein compare
ABZR87_RS09515 -1.1 -0.9 cysteine synthase CysM compare
ABZR87_RS13645 -1.1 -0.8 hypothetical protein compare
ABZR87_RS09655 -1.1 -2.7 ribosome biogenesis factor YjgA compare
ABZR87_RS22330 -1.1 -2.6 hypothetical protein compare
ABZR87_RS05085 -1.1 -6.2 lactonase family protein compare
ABZR87_RS14510 -1.0 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS23175 -1.0 -1.4 ABC transporter ATP-binding protein compare
ABZR87_RS08235 -1.0 -0.9 hypothetical protein compare
ABZR87_RS05010 -1.0 -1.9 rod shape-determining protein RodA compare
ABZR87_RS14115 -1.0 -1.6 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS10820 -1.0 -3.5 LysR substrate-binding domain-containing protein compare
ABZR87_RS07470 -1.0 -3.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS18405 -1.0 -2.6 hypothetical protein compare
ABZR87_RS16080 -1.0 -2.0 P-II family nitrogen regulator compare
ABZR87_RS11895 -1.0 -1.6 ribonuclease HII compare
ABZR87_RS02550 -1.0 -1.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS22300 -1.0 -0.6 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS06030 -0.9 -0.6 AraC family transcriptional regulator compare
ABZR87_RS06845 -0.9 -3.9 heme o synthase compare
ABZR87_RS14675 -0.9 -0.6 glyoxalase compare
ABZR87_RS14330 -0.9 -0.5 hypothetical protein compare
ABZR87_RS17145 -0.9 -5.5 AMP nucleosidase compare
ABZR87_RS19105 -0.9 -2.4 amidohydrolase family protein compare
ABZR87_RS22485 -0.9 -3.3 FAD-dependent oxidoreductase compare
ABZR87_RS19205 -0.9 -1.8 hypothetical protein compare
ABZR87_RS11375 -0.9 -3.7 inorganic phosphate transporter compare
ABZR87_RS04500 -0.9 -0.7 hypothetical protein compare
ABZR87_RS04695 -0.9 -2.7 hypothetical protein compare
ABZR87_RS13495 -0.9 -2.8 exodeoxyribonuclease III compare
ABZR87_RS18920 -0.9 -1.3 Rieske (2Fe-2S) protein compare
ABZR87_RS22875 -0.9 -0.6 chorismate mutase compare
ABZR87_RS05065 -0.9 -1.4 tyrosine recombinase XerC compare
ABZR87_RS16885 -0.9 -1.1 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrate in Ralstonia sp. UNC404CL21Col

For nitrogen source Sodium nitrate across organisms